mRNA_H-paniculata_contig29012.7911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29012.7911.1
Unique NamemRNA_H-paniculata_contig29012.7911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 2.960e-119
Identity = 164/273 (60.07%), Postives = 196/273 (71.79%), Query Frame = 1
Query:    1 GFENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            G  ++ +CPHC QS+GPAA+R+R             G   WPH N    GE   NGNY E+D+++ RHG+CGDP Q    EG NKY Q+NS YPVLET+AEG ++E+K+V+STYHWGH+E F+C+ADDL  G D  VTQ CFN+YPLDRA DD    PIDP + GR+ +DPPCRA ETDQ    G   GDV TAR+QLPQG+TCERC +QM YYTGNSC H GY EFNP SWPS CAP+K DWI    G CGDGD+YPEEFWNCAD++ITS G
Sbjct:   47 GSPDINYCPHCFQSRGPAAIRARG------------GDQPWPHFN----GERAKNGNYIESDEVAQRHGVCGDPEQTAA-EGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDG 302          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 5.340e-118
Identity = 161/273 (58.97%), Postives = 196/273 (71.79%), Query Frame = 1
Query:    1 GFENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            G  ++ +CPHC QS+GPAAVR+R   K             WPH N    GE   NGNY E+++++ RHG+CGDP Q    E  NKY Q+NS YPV ET+AEG ++E+K+V+STYHWGH+E F+CNA +L GG D TVTQ CFN++PLDRA DD    P DP++ GR+ +DPPCRA ETDQ+   G    DV TAR++LPQGL+CERC +QMVYYTGNSC H GY EFNP SWPS CAP+K DWI    G CGDGD+YPEEFWNCADI+ITS G
Sbjct:   50 GSPDINYCPHCFQSRGPAAVRARGGDKP------------WPHFN----GERAENGNYIESEEVARRHGICGDPEQTAA-ESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 305          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 3.660e-117
Identity = 158/274 (57.66%), Postives = 190/274 (69.34%), Query Frame = 1
Query:    4 FENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGGFS 825
            FE ME+CP C  ++GP  V+ R    TDP  L  YG G WP   +Y +GE+  NGNY E D+I+ RHG+CGDP Q  + EG N Y+  N  +P+L T+ EG V+E+K+ M+ YHWGH+EFFICNAD++    DG   Q CFN YPL RA  D + SPIDPN+PGRYYVDP CR  ETDQ+KP G   G V+ A YQLP+GLTC+RC +QM YYTGNSC H GYEEF P SWPS CAP K DWI LD  +CG+  SYPEEFW CAD AIT  G +
Sbjct:   11 FERMEYCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQ-NEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMA 282          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 1.180e-116
Identity = 173/341 (50.73%), Postives = 204/341 (59.82%), Query Frame = 1
Query:    4 FENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHW-----------------------------------------------------------------------GHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITS 813
            + ++  CPHC QS+GP+AVR R E  T+   L  YG G WPHL SY R E+  NGNYYE ++ISVRHG+CGDP Q +  EG N Y Q+NS YPV   ++EG ++E+K+V+STYHW                                                                       GHLEFFICNA+D+S   DG VTQGCFN +PLDRA DDGDASPIDP+H GRYY+DPPCRA ETDQ    G   GDV TARY+LP GLTC RC +QMVYYTGN+C HPGY+EF+P S P  CAP KEDW+    GMCG+   YPEEFWNCADI ITS
Sbjct:   29 YSDINWCPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKA-EGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDMSD-PDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITS 367          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.750e-115
Identity = 164/273 (60.07%), Postives = 196/273 (71.79%), Query Frame = 1
Query:    1 GFENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            G  ++ +CPHC QS+GPAA+R+R   K             WPH N    GE   NGNY E+++++ RHG+CGDP Q    E  NKY  +NS YPVLET+AEG ++E K+V+STYHWGH+E F+C+ADDL GG D TVTQ CFN++PLDR  DD   SPIDP++ GR+ +DPPCRA ETDQ    G   GDV TAR++LPQGLTCERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CGDGD+YPEEFWNCADI+ITS G
Sbjct:   49 GSPDINYCPHCFQSRGPAAIRARGGDKP------------WPHFN----GERAENGNYIESEEVAQRHGICGDPEQTAA-EDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDG 304          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 6.500e-114
Identity = 159/273 (58.24%), Postives = 193/273 (70.70%), Query Frame = 1
Query:    1 GFENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            G  ++ +CPHC QS+GPAA+R+R             G   WPH N    GE   NGNY E+D+++ RHG+CGDP Q    EG NKY Q+NS YPVLET+AEG ++E+K+V+STYHWGH+E F+C+ADDL  G D  VTQ CFN++PLDRA DD    PIDP + GR+ +DPPCRA ETDQ    G   GDV TAR+QLPQG+TCERC +QM Y+  NSC H GY EFNP SWP  CAP+K DWI    G CGDGD+YPEEFWNCAD++ITS G
Sbjct:   18 GSPDINYCPHCFQSRGPAAIRARG------------GDQPWPHFN----GERAENGNYIESDEVAQRHGVCGDPEQTAA-EGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDG 271          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 1.260e-111
Identity = 157/266 (59.02%), Postives = 187/266 (70.30%), Query Frame = 1
Query:   22 CPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            CPHC QS+GPAA+R R+  K             WPH     +G    NGNY E+D+++ RHG+CGDP Q    EGDNKY ++N  YPVL T+AEG V+E+K+++STYHWGH+E F+C+  DL  G D  VTQ CFN YPLDRA DD    PIDP + GR+ +DPPCRA ETDQ    G   GDV TARYQLP+G+ C+RC +QMVYYTGNSC H GY EFNP SWPS CAP+K DWI    G CGDGD+YPEEFWNCADI+ITS G
Sbjct:   61 CPHCYQSRGPAAIRERSGDKP------------WPHY----QGARAANGNYLESDEVAQRHGICGDPEQTAA-EGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 309          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 3.330e-110
Identity = 160/273 (58.61%), Postives = 195/273 (71.43%), Query Frame = 1
Query:    1 GFENMEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            G  N+ +CPHC QS+G AAVR+R             G   WPH N    G+   NGNY E+++++ RHG+CGDP Q    EG N Y  +NS YPVLET+AEG ++E K+V+STYHWGH+E F+C+A+DL GG D TVTQ CFN++PLDR  DD   SPIDP++ GR+ +DPPCRA ETDQ    G   GDV TAR++LP+G++CERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CGDGD+YPEEFWNCADI+ITS G
Sbjct:   49 GSPNINYCPHCFQSRGAAAVRARG------------GDQPWPHFN----GDRAANGNYIESEEVAQRHGICGDPEQTAA-EGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDG 304          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.060e-98
Identity = 148/269 (55.02%), Postives = 178/269 (66.17%), Query Frame = 1
Query:   13 MEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLPNGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADIAITSGG 819
            +E CPHC  ++GP  V+ RA    D   L+ YGGG       Y  GE   NGNY ET++I+ RHG+CGDP Q    EG N Y+  N  +  L++F  G V+EM +VM+ YHWGH EFF+CN DD+    DG  TQ CFN +PL RA DDGDASPIDPN+PGRYYVDP CR  ET+QS  +  G    +  RY LP  + CE C +QMVYYTGN+C H GYEEFNPTSWPS CAPNK DWI LD  +CG    YPEEFW C+D ++TS G
Sbjct:   46 VEFCPHCYNARGPKYVKQRAYDNVDSATLDAYGGGE--EFPLYF-GEFADNGNYLETNEIAKRHGVCGDPEQ-NADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSSNSIEGYN--IKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDG 306          
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 3.870e-95
Identity = 135/220 (61.36%), Postives = 162/220 (73.64%), Query Frame = 1
Query:  163 NGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSVVEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDGDASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTCERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGM-CGDGDSYPEEFWNCADIAITSGG 819
            NGNY ++D+ +               EG N+Y Q+NS YPVLET+AEG ++E+K+V++TYHWGH+E F+C+ADDL  G D  VTQ CFN+YPLDRA DD   SPIDP + GR+ +DPPCRA ETDQ    G   GDV TAR+QLPQG+TCERC +QMVYYTGNSC H GY EFNP SWPS CAP+K DWI    G  CGDGD+YPEEFWNCAD++ITS G
Sbjct:   49 NGNYIQSDETAA--------------EGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDG 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29012.7911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD67_ECTSI2.960e-11960.07EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI5.340e-11858.97EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI3.660e-11757.66EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE1.180e-11650.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LM92_ECTSI1.750e-11560.07EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE6.500e-11458.24CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMF4_ECTSI1.260e-11159.02EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KTY6_9PHAE3.330e-11058.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI1.060e-9855.02EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FP25_ECTSI3.870e-9561.36EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29012contigH-paniculata_contig29012:123..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score393.7
Seed ortholog evalue7.2e-107
Seed eggNOG ortholog2880.D7FSZ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size834
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29012.7911.1prot_H-paniculata_contig29012.7911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29012 123..2604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.3092782-CDS-H-paniculata_contig29012:122..3161622929885.3092782-CDS-H-paniculata_contig29012:122..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 123..316 -
1691481054.8068755-CDS-H-paniculata_contig29012:122..3161691481054.8068755-CDS-H-paniculata_contig29012:122..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 123..316 -
1622929885.3284407-CDS-H-paniculata_contig29012:664..9561622929885.3284407-CDS-H-paniculata_contig29012:664..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 665..956 -
1691481054.8158963-CDS-H-paniculata_contig29012:664..9561691481054.8158963-CDS-H-paniculata_contig29012:664..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 665..956 -
1622929885.3494654-CDS-H-paniculata_contig29012:1345..14561622929885.3494654-CDS-H-paniculata_contig29012:1345..1456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 1346..1456 -
1691481054.823592-CDS-H-paniculata_contig29012:1345..14561691481054.823592-CDS-H-paniculata_contig29012:1345..1456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 1346..1456 -
1622929885.3649876-CDS-H-paniculata_contig29012:1704..19021622929885.3649876-CDS-H-paniculata_contig29012:1704..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 1705..1902 -
1691481054.8311453-CDS-H-paniculata_contig29012:1704..19021691481054.8311453-CDS-H-paniculata_contig29012:1704..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 1705..1902 -
1622929885.3819501-CDS-H-paniculata_contig29012:2577..26041622929885.3819501-CDS-H-paniculata_contig29012:2577..2604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 2578..2604 -
1691481054.8389318-CDS-H-paniculata_contig29012:2577..26041691481054.8389318-CDS-H-paniculata_contig29012:2577..2604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29012 2578..2604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.4041224-UTR-H-paniculata_contig29012:2604..26161622929885.4041224-UTR-H-paniculata_contig29012:2604..2616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29012 2605..2616 -
1691481054.846167-UTR-H-paniculata_contig29012:2604..26161691481054.846167-UTR-H-paniculata_contig29012:2604..2616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29012 2605..2616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29012.7911.1

>prot_H-paniculata_contig29012.7911.1 ID=prot_H-paniculata_contig29012.7911.1|Name=mRNA_H-paniculata_contig29012.7911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
MEHCPHCMQSKGPAAVRSRAEAKTDPTELETYGGGRWPHLNSYMRGELLP
NGNYYETDKISVRHGLCGDPGQARQPEGDNKYAQDNSVYPVLETFAEGSV
VEMKVVMSTYHWGHLEFFICNADDLSGGSDGTVTQGCFNKYPLDRATDDG
DASPIDPNHPGRYYVDPPCRAVETDQSKPTGTGTGDVVTARYQLPQGLTC
ERCTIQMVYYTGNSCHHPGYEEFNPTSWPSECAPNKEDWITLDPGMCGDG
DSYPEEFWNCADIAITSGGFSVTS
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mRNA from alignment at H-paniculata_contig29012:123..2616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29012.7911.1 ID=mRNA_H-paniculata_contig29012.7911.1|Name=mRNA_H-paniculata_contig29012.7911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2494bp|location=Sequence derived from alignment at H-paniculata_contig29012:123..2616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTCGAAAATATGGAGCACTGCCCCCACTGTATGCAGGTAGGAGAAGT TATCGATAAGTGAAGAGTGTTGACACGAGAAGAGAAGGTTGTGAGCTTGG GGGCCGCTCTATACGAGGCCATTTTACGTTTGATTTTTCTGATTTTCCCA TTTCTGAAAAATAGGAACTCGGAATAGCGAGCTCAAAATTGAGGAAACAG TGCGGAGCCACTCTACAGCATGTTGCCTTCATACGTCTGGTGCACTTTGG TCAAAGTCGTCAAGTTGTTCAGCTCGCTATCGCGATTTTCAATTTTCGGG AAACGGAAAAATCGGACGTAAATCGGACGTAAATCGGACGAAAAGCGCCC TCGTTTAGAACGGCCATCACGGGCAAAGCGAAGAAATGTTATGGACCAAT CAGTAGTGTTAAACGTTTCCGAGACTTAATATTTTTCGCTTTCATTGGCC AATGGTGTGGTGTGTGTAGCGTTTACTCTTCTAGATCTAATTGATTTTAT GGGCAAAGATACATGGACTTGTGATTTGCAGTATCTTTAGCACCACTATT TGGTGTATCTAGGCACGGGTCAACATCCCCCGTATTTCGTGTATAGAGCT CTACAGCACCGGTGCTGACTATACTATACATATATGCAGTTTTTAAATAC GAACAGAACACATCTAAAAAACGTAAATCCTCCCCATGCCTTCCTCCCGC TTTGATTCCTGCAGTCCAAAGGTCCCGCCGCTGTGCGCTCCCGTGCCGAG GCCAAGACTGACCCGACTGAGCTGGAGACGTATGGCGGCGGCCGCTGGCC CCACCTCAACTCCTACATGAGAGGGGAGCTATTGCCGAATGGAAACTACT ACGAGACCGACAAGATCTCTGTTCGCCACGGTCTGTGCGGCGACCCGGGA CAGGCGAGACAAGTTGGAGTGCACAAGGGATGTACGTTTGTACTAACTGA GAAATACACCAAGGCCCGATCATTGCATTTGTCGCCGCAATGAGCCAGAA TAGTGGGGTTTCGGAGGTGTAACAACCGATTAGAAACACAGAGGCATGTC AGGATTATTCAAAGGCTTCTCGATACTACTCAACGTAGCCCCTCGTGCCC TTCTTTGCTCCGCCCCGACCCCACCCCCCCCCTGCCTATCCTAAAACACA ACAGACGCAGCCGGAAGGCGACAACAAGTACGCACAAGACAACAGCGTGT ATCCCGTACTCGAGACCTTTGCAGAAGGCTCCGTGGTCGAGATGAAGGTC GTCATGTCCACGTATCACTGGGTGAGTATTTTCGTGTAGAGTGCCGCTCT TTCGTGGGTTGTTGATAGGGGCGGTGTCGAGTAGATGGGCCACCCCTTCC GGTGTATTCATCTGAACGTGTACTAGTACACTTGAAGAAATAACACCAAC GTCTCCAGTCAACGTCTGATGAATATATGAGAATTCTCGGGGTATAGATG TATACTAATCTCGTTCGTTTTGCTGTTGCCGGTACAAGGATGCAACTGAC GGTTGTGTAGTTCTTGGTCGTTTATCGACGATCATGCATTTATTTTGTAG GCCCCCGTAGCGGTCGGTGGACACCCCGCTCTACTCGATTCACGAATATA GAATACGTCAGACTAGACGCAGCAGAAACATCTTGCCCTCTCTTCTCCAC CTCACAACAGGGCCACCTGGAGTTCTTTATCTGTAACGCCGATGATCTCT CCGGAGGGTCTGATGGTACCGTCACCCAGGGCTGTTTCAACAAATACCCC CTCGACAGGGCGACCGATGATGGCGACGCTAGCCCCATTGACCCCAACCA CCCTGGTCGTTACTACGTAGATCCTCCGTGCCGCGCCGTCGAGACCGACC AGTCCAAGCCTACTGGGACCGGCACAGGAGACGTGGTGACCGCGCGCTAC CAGCTACCTCAGGGTCTGACTTGCGAAAGATGCACCATCCAGATGGTGTA CTGTGAGTGGTTTGGAGCTATTTACGCCTAGTAAAAGGGTTTGTGTGGTT TGTTTCGTAGTGGGGGTTAAGGACAGGCCTGATGTTGGAATAGAGGGGAC ACAGGGAATTGGTCGGGATTTGTAGCTTCCACGATCTCGTGGGATAGATG TACACCCAGATTCGAAACTTGGGCCTCTCCTCCTCTCGCTCCAAGGAACC TACAACGACACATACATACATCGATGATGTAATGATCATGGATGAATCCG AGACACGGGAAACAAGGGGTCTTATCTTAATGATCATCTCCTTTCCCCGA CTCCCTCCCAACCCTCATCCCCACTCCGCCGTGTCGTACTCCAACTGCAG ACACAGGAAACTCATGCCACCACCCGGGATACGAAGAGTTCAATCCTACC TCGTGGCCCAGCGAGTGCGCGCCCAACAAGGAAGACTGGATCACCCTCGA CCCCGGCATGTGTGGTGATGGCGACAGCTACCCCGAGGAGTTTTGGAATT GTGCCGACATCGCCATCACCTCCGGTGGGTTTTCGGTAACGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig29012:123..2616-

>mRNA_H-paniculata_contig29012.7911.1 ID=mRNA_H-paniculata_contig29012.7911.1|Name=mRNA_H-paniculata_contig29012.7911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig29012:123..2616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCACTGCCCCCACTGTATGCAGATGGAGCACTGCCCCCACTGTAT
GCAGTCCAAAGGTCCCGCCGCTGTGCGCTCCCGTGCCGAGGCCAAGACTG
ACCCGACTGAGCTGGAGACGTATGGCGGCGGCCGCTGGCCCCACCTCAAC
TCCTACATGAGAGGGGAGCTATTGCCGAATGGAAACTACTACGAGACCGA
CAAGATCTCTGTTCGCCACGGTCTGTGCGGCGACCCGGGACAGGCGAGAC
AATCCAAAGGTCCCGCCGCTGTGCGCTCCCGTGCCGAGGCCAAGACTGAC
CCGACTGAGCTGGAGACGTATGGCGGCGGCCGCTGGCCCCACCTCAACTC
CTACATGAGAGGGGAGCTATTGCCGAATGGAAACTACTACGAGACCGACA
AGATCTCTGTTCGCCACGGTCTGTGCGGCGACCCGGGACAGGCGAGACAA
CCGGAAGGCGACAACAAGTACGCACAAGACAACAGCGTGTATCCCGTACT
CGAGACCTTTGCAGAAGGCTCCGTGGTCGAGATGAAGGTCGTCATGTCCA
CGTATCACTGGCCGGAAGGCGACAACAAGTACGCACAAGACAACAGCGTG
TATCCCGTACTCGAGACCTTTGCAGAAGGCTCCGTGGTCGAGATGAAGGT
CGTCATGTCCACGTATCACTGGGGCCACCTGGAGTTCTTTATCTGTAACG
CCGATGATCTCTCCGGAGGGTCTGATGGTACCGTCACCCAGGGCTGTTTC
AACAAATACCCCCTCGACAGGGCGACCGATGATGGCGACGCTAGCCCCAT
TGACCCCAACCACCCTGGTCGTTACTACGTAGATCCTCCGTGCCGCGCCG
TCGAGACCGACCAGTCCAAGCCTACTGGGACCGGCACAGGAGACGTGGTG
ACCGCGCGCTACCAGCTACCTCAGGGTCTGACTTGCGAAAGATGCACCAT
CCAGATGGTGTACTGGCCACCTGGAGTTCTTTATCTGTAACGCCGATGAT
CTCTCCGGAGGGTCTGATGGTACCGTCACCCAGGGCTGTTTCAACAAATA
CCCCCTCGACAGGGCGACCGATGATGGCGACGCTAGCCCCATTGACCCCA
ACCACCCTGGTCGTTACTACGTAGATCCTCCGTGCCGCGCCGTCGAGACC
GACCAGTCCAAGCCTACTGGGACCGGCACAGGAGACGTGGTGACCGCGCG
CTACCAGCTACCTCAGGGTCTGACTTGCGAAAGATGCACCATCCAGATGG
TGTACTACACAGGAAACTCATGCCACCACCCGGGATACGAAGAGTTCAAT
CCTACCTCGTGGCCCAGCGAGTGCGCGCCCAACAAGGAAGACTGGATCAC
CCTCGACCCCGGCATGTGTGGTGATGGCGACAGCTACCCCGAGGAGTTTT
GGAATTGTGCCGACATCGCCATCACCTCCGGTGGGTTTTCGGTAACGAGT
ACACAGGAAACTCATGCCACCACCCGGGATACGAAGAGTTCAATCCTACC
TCGTGGCCCAGCGAGTGCGCGCCCAACAAGGAAGACTGGATCACCCTCGA
CCCCGGCATGTGTGGTGATGGCGACAGCTACCCCGAGGAGTTTTGGAATT
GTGCCGACATCGCCATCACCTCCGGTGGGTTTTCGGTAACGAGT
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