mRNA_H-paniculata_contig29011.7910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29011.7910.1
Unique NamemRNA_H-paniculata_contig29011.7910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.160e-15
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   10 VRLCESHGQTSFQRYLARGPLAMLPLQGDR-ASLVWSTTPEHAEHLKA 150
            V+L ESHG+ +FQRYL+RGPLAMLPL G + ASLVWSTTPEHAE LK+
Sbjct:  289 VKLAESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPEHAESLKS 336
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.160e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   10 VRLCESHGQTSFQRYLARGPLAMLPLQGDR-ASLVWSTTPEHAEHLKA 150
            V+L ESHG+ +FQRYL+RGPLAMLPL G + ASLVWSTTP HAE LK+
Sbjct:  191 VKLAESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPVHAESLKS 238
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: UPI00140E385E (UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Thioalkalivibrio sp. XN279 TaxID=2714953 RepID=UPI00140E385E)

HSP 1 Score: 59.3 bits (142), Expect = 5.500e-9
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   28 HGQTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHL 144
            HG+T++QR+L  GP+A+LPL   R S+VWSTTPEHA+ L
Sbjct:  192 HGETAWQRFLPSGPIALLPLADGRVSIVWSTTPEHAQRL 230
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: UPI0019314A82 (UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019314A82)

HSP 1 Score: 58.9 bits (141), Expect = 7.560e-9
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   10 VRLCESHGQTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLKA 150
            VR   +H +T++QR+L  GP+A LPL   R+S+VW+TTPEHAE L A
Sbjct:  203 VRTQHTHARTAWQRFLPDGPIAYLPLADGRSSIVWTTTPEHAERLVA 249
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A0M8MWW6_9HYPO (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8MWW6_9HYPO)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 GWKVRLCESHGQTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLK 147
            GW   LC+    T++QR+L  GP+AMLP+ G  A+LVWSTTP HA  LK
Sbjct:  256 GWGGELCK----TAYQRFLPTGPVAMLPMPGKHATLVWSTTPAHAALLK 300
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BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: M2N855_BAUPA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N855_BAUPA)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   34 QTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLK 147
            +T+FQR+L  GP+A+LPL G++ASLVWST+P+HA  LK
Sbjct:  267 RTAFQRFLPTGPIALLPLPGNKASLVWSTSPQHAAKLK 304
[Close]
BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A4U0Y3Z9_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Friedmanniomyces simplex TaxID=329884 RepID=A0A4U0Y3Z9_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   34 QTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLK 147
            +T++QR+L  GP+A+LPL G++ASLVWSTTP+HA  LK
Sbjct:  289 RTAYQRFLPTGPVALLPLPGNKASLVWSTTPQHAAKLK 326
[Close]
BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A4U0UDD3_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UDD3_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   34 QTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLK 147
            +T++QR+L  GP+A+LPL G++ASLVWSTTP+HA  LK
Sbjct:  289 RTAYQRFLPTGPVALLPLPGNKASLVWSTTPQHAAKLK 326
[Close]
BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A4U0UVJ0_9PEZI (FAD_binding_3 domain-containing protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UVJ0_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   34 QTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLK 147
            +T++QR+L  GP+A+LPL G++ASLVWSTTP+HA  LK
Sbjct:  562 RTAYQRFLPTGPVALLPLPGNKASLVWSTTPQHAAKLK 599
[Close]
BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Match: A0A7X7PTX6_9GAMM (UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7X7PTX6_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 2.650e-8
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 VRLCESHGQTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHL 144
            VR   +HGQT++QR+L  GP+A LPL   R+S+VWST+P+HA+ L
Sbjct:  200 VRTELAHGQTAWQRFLPDGPIAFLPLADGRSSIVWSTSPDHAQAL 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29011.7910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1J7_ECTSI8.160e-1575.00Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE7.160e-1472.92FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
UPI00140E385E5.500e-961.54UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis... [more]
UPI0019314A827.560e-955.32UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis... [more]
A0A0M8MWW6_9HYPO1.940e-855.10Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
M2N855_BAUPA1.940e-863.16Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A4U0Y3Z9_9PEZI1.940e-863.16Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A4U0UDD3_9PEZI1.940e-863.16Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A4U0UVJ0_9PEZI1.950e-863.16FAD_binding_3 domain-containing protein n=1 Tax=Fr... [more]
A0A7X7PTX6_9GAMM2.650e-855.56UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29011contigH-paniculata_contig29011:296..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.2715776-CDS-H-paniculata_contig29011:295..4451622929885.2715776-CDS-H-paniculata_contig29011:295..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29011 296..445 +
1691481054.7968078-CDS-H-paniculata_contig29011:295..4451691481054.7968078-CDS-H-paniculata_contig29011:295..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29011 296..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29011.7910.1prot_H-paniculata_contig29011.7910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29011 296..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29011.7910.1

>prot_H-paniculata_contig29011.7910.1 ID=prot_H-paniculata_contig29011.7910.1|Name=mRNA_H-paniculata_contig29011.7910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
GWKVRLCESHGQTSFQRYLARGPLAMLPLQGDRASLVWSTTPEHAEHLKA
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mRNA from alignment at H-paniculata_contig29011:296..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29011.7910.1 ID=mRNA_H-paniculata_contig29011.7910.1|Name=mRNA_H-paniculata_contig29011.7910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig29011:296..445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAAGGTAAGGTTGTGTGAGTCCCATGGACAGACATCGTTTCAACG
GTACCTCGCGAGGGGCCCGCTCGCGATGCTGCCGCTTCAGGGAGATCGGG
CGTCGCTGGTATGGTCTACTACTCCCGAGCACGCCGAGCATCTCAAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig29011:296..445+

>mRNA_H-paniculata_contig29011.7910.1 ID=mRNA_H-paniculata_contig29011.7910.1|Name=mRNA_H-paniculata_contig29011.7910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig29011:296..445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAAGGTAAGGTTGTGTGAGTCCCATGGACAGACATCGTTTCAACG
GTACCTCGCGAGGGGCCCGCTCGCGATGCTGCCGCTTCAGGGAGATCGGG
CGTCGCTGGTATGGTCTACTACTCCCGAGCACGCCGAGCATCTCAAGGCA
GGGTGGAAGGTAAGGTTGTGTGAGTCCCATGGACAGACATCGTTTCAACG
GTACCTCGCGAGGGGCCCGCTCGCGATGCTGCCGCTTCAGGGAGATCGGG
CGTCGCTGGTATGGTCTACTACTCCCGAGCACGCCGAGCATCTCAAGGCA
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