mRNA_H-paniculata_contig2900.7909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2900.7909.1
Unique NamemRNA_H-paniculata_contig2900.7909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2900.7909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2900contigH-paniculata_contig2900:13780..17339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size362
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2900.7909.1prot_H-paniculata_contig2900.7909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2900 13780..17339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.1936328-CDS-H-paniculata_contig2900:13779..138241622929885.1936328-CDS-H-paniculata_contig2900:13779..13824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 13780..13824 +
1691481054.7541952-CDS-H-paniculata_contig2900:13779..138241691481054.7541952-CDS-H-paniculata_contig2900:13779..13824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 13780..13824 +
1622929885.208662-CDS-H-paniculata_contig2900:16457..166031622929885.208662-CDS-H-paniculata_contig2900:16457..16603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 16458..16603 +
1691481054.7730951-CDS-H-paniculata_contig2900:16457..166031691481054.7730951-CDS-H-paniculata_contig2900:16457..16603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 16458..16603 +
1622929885.2202692-CDS-H-paniculata_contig2900:17170..173391622929885.2202692-CDS-H-paniculata_contig2900:17170..17339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 17171..17339 +
1691481054.7846754-CDS-H-paniculata_contig2900:17170..173391691481054.7846754-CDS-H-paniculata_contig2900:17170..17339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 17171..17339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2900.7909.1

>prot_H-paniculata_contig2900.7909.1 ID=prot_H-paniculata_contig2900.7909.1|Name=mRNA_H-paniculata_contig2900.7909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
GSEQDGQQQQFERKEAPSSRGPVKISLRLTDTTPKLSECDGRSPTSRVGA
AVHRPPAGGSLTSRSAPAAIEGSGRGPRPSGSVGPKSARRAPPSAAIVIS
VTVRRFPYMEIFRMARFIL*
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mRNA from alignment at H-paniculata_contig2900:13780..17339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2900.7909.1 ID=mRNA_H-paniculata_contig2900.7909.1|Name=mRNA_H-paniculata_contig2900.7909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3560bp|location=Sequence derived from alignment at H-paniculata_contig2900:13780..17339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTCTGAACAGGACGGACAGCAGCAGCAGTTTGAGAGGAAAGAGGTGAG
GAAGGGCTCCTGTTGACGTGCGTTTGTGAGTGTTTTTCGTTTACTCTCTG
TAATAGTGCGCGCGTTTTTTGCGGGAGGCTACTGTATCGATGGATCTATC
GTCCAGGTATCAAATGTCTACTGTTGTGATATCAGGTTCAATACGTTTTT
CGAGTTCGTGCCGTGTTCGTTGGGGCTGTACATGCGGCGTGTATCATCGG
GTCCTTCAGGAAAGGTTCAAAGTCTAATATTTGGCTTTCTTTTTCGCAAG
ATGGGTGAGTACTTGTTGTACTTGAGTTTACTTGGGAACTGGGATAATGT
ACGCAGAACCTCATATCGTCGTCCAGTCTCTTGATCTATCTAAAATCCTA
GCCTATGGGTTTCTGTCTGAAGTCCTAACCTGCAGGTTTCCGAGTTGGCA
CCGTTTTCTTTTGAGGGAATCAATACGATTATATCTTTACCACCTTTCTG
CGCTGCGTGCTTCAAACGCAACGAGTTTCTCCGCAACGCATCCCAAAATA
TGTATCGTAACGAATTTTCGCCGCATCGATTTTCAAACGTCATATATTGT
GCCGCCACTGCTCTCCTGGTGATAACTGCTCAGTCACCTTCAGTACACGA
ATCGAGCACGGTGTAGCCGACGAGAAAAACACCTTAGGCTAATGTTACTA
CACCGTTGAACTAAGATGGAAGTAGACAAGGCATATATCCCTCGCCGGAC
AATTAGAGGTATAATTATCGCTATTGCCTTCAACCATATGCACAGTCGGA
TGCGGTGATCGGCGAATGGAAACCCCCAAAAGATTCACTCGCTGTAACTG
ACTGATCGACAATCCTCAACAAAGAATCTGGTCGATACCGGCCAGATCGA
TAAACAACTTGAAGCTTAACTAACTGGCAATTCCGATTCATCAGACCTTA
TCTAGATAGTGTCTGCGTTATTATTATCATTTTTTAAAATATAATATACG
AAGAATACAATTTATGTAGTGGTCATATTATTTTTCTGTTACTTTTCCTG
GAACAAGACTCTCCAACGTACCAAGTTACTAAACCGACGAAAACAAAGCA
AGTTTCGGCCGGGGTGAATCACGTTGACTTGGGAGTGAGTTCTGTAGCAA
ACGGGAGGTTCTAGGCGATACGTACGTCACGTATCAACAAAAAACAGCAT
ATTGGTGAAATGAAAAGGTCAAATTCGTTTTAGCCATCTCTGTGGCTGGC
CAGAGTACATACAGCCATCCTGACCGAAATGATCGTATGCGTATGGACCA
ATCAGAGAGGCCACACACGGCGATGCTTATGTCTTGAAAATAATTTGCGA
TTTTGGTTCCTTCTGTCAAAATACGACCGACTTCAATGAGATGGACACCC
GTTGCTGTTCGTGGCTTAATTGTTTGGTGAAAATTCGGCGGCAACCAAAA
GGCGCACTATCTTGGAACTATAAACAGTTCTATTTCAAGGGAAACGCGGA
AAGTCCATCTCATGTGTAGATTTCGGCTTGCTGACAGAACCATCTTTTTT
TTTCAATATAGCATCCGTGTTCTTTGTATGCCAGTCAGTCCCTGCGGTTA
TTTAAGCAGCTACTACTGAAATCAGTCTTGTTTGTTAGATTTCCTGGACA
TTAATCGTTTTTGTCTTGTCTGACCCTTCCCCTAGGAGTGTTTTTGCTAC
TACTGTGCCTCACTGTTATCCAATATCTTGAAAGGCAAAACAACGCGGTT
TTTTCACATTCGTTATTGTCAGCCAACTGCATTGCTACGAAACGAGGCTT
GCCACCTAACGTTGATTCTTGATGCTTACGAACCGCCATGTCCAAGAACA
CACACATTGTCGAAACGGGAGTAATTCACACATACACATATATTTTGAAT
GACCGGCTGAAAACAACAGTACGAAGTTACCTTCCAACGCCGCATGAGCC
AGACATTGGTTACCTTTTCACGCCCCGGACAAGTACGAATGGAGTATTCG
CAACTATCTCGAATTATCATTACTTGTCTTGGGGCAAACACATATTTATT
CGTTTACAAGTCTACGAATGGTCACTCTACAGATGGTCACCAAGTGGTCG
TATACCCGGCGAACAGTCACACGTGCAGGTCCTGTTTATTTTCTGGATAG
TACTGTACAGATTGAATACTCTGTATGCCCGAACTTTTTCGATGCTCCAT
GGTATGTCGAATAGACGGCATATTATTCGCGTCACATGGACATCTTCCCC
AACTCAAACAGATACAGTATTCATTCCGAATTTCTCGTATTTATTCGTGT
CTTGTATTCGTATTTGTCCGGGGGGTGTAACATTTGCAGCGTTTCTCACA
TTTGTTTTTTATTACAATTGGTTGCTTGTGTTGTGCTACTACCGACAGAA
TAGAGAAAAAAAATTAAGGTCAATTGGCAATTCTGATTCTATCAGACGTT
GACTGGGTGACGTTATTTTCTTCATTTTTTCAATGTATACATACATACAT
GCTAGCTGCTTATCTCTTACTACGACGGGTAATATTTTCGCATGCCTCCA
CGGACCAACAAGGCGCTAGCGCTCATCACTTGCATATTTCCCCCGCTAAA
CGTTGCCGCGATGGCGCTCGCATCAAATGTGCCTGAATATTGTCTGATGA
ACATATGACGTCGTCCCCTATCTCCAAGGCGCCGTCGTCACGTGGTCCGG
TCAAAATCTCTCTGCGGCTAACCGATACCACGCCGAAGCTATCGGAGTGT
GACGGAAGGTCTCCCACCTCTAGGGTTGGAGCGGCAGTTCACCGTCCACC
CGCTGGAGGCTCCTTGACATCCAGGTATGTATGCCAATAACCACAGTTTG
TCTTGAAAAAATGCGTTGATTGTTGCCCCAGGGCTGCTTGCTGTTTTCGA
GTGTCGTTACAGTCGCAATCGCGCGCGGGTGAACCCTGCCAGCTCTGTAC
ACGCTAATCCTAAGCATTTTACTAGCCTTGTTGTGTACCAAATCTTGCCC
CTGTAGCCTCTGAAATCACCCAAAATCTTGCGCCGCTTCGGGGGGTGGCG
GAGACGCTAGAAACAGGTTCATGAAGGGTCCGGGCAGGTTCGGGTAGTGC
ACAACACACTGTGTATTACCAAACACAATAAATCAACCATTTTCCGAGGA
CGAACTGGGGTACAACATGGTGACAACTAGCAACGCTGCCGGAGAAAATA
CCCGACTGACTGCAGTATACACGCAACACAACGTCAGCAATAAAACAAGT
TCGCCGCAAACCGTTTTCCCTACCTATCTCGCACCCGAATTGCTTCTGAA
CGGAGAAGCTATGTCACATAATGGCGCAGAACGACCGAAGAAAACTCTGC
ACTGCTTCATATCCCATCGTCATCGTATTGTCTTGCTCCAGATCTGCACC
AGCAGCAATAGAGGGGAGCGGGCGGGGTCCTAGGCCGAGCGGATCTGTTG
GGCCGAAAAGCGCCAGGAGAGCTCCGCCGAGTGCGGCGATTGTCATCTCT
GTGACGGTCAGAAGATTTCCTTACATGGAGATTTTTCGGATGGCTAGATT
TATTCTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2900:13780..17339+

>mRNA_H-paniculata_contig2900.7909.1 ID=mRNA_H-paniculata_contig2900.7909.1|Name=mRNA_H-paniculata_contig2900.7909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig2900:13780..17339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTCTGAACAGGACGGACAGCAGCAGCAGTTTGAGAGGAAAGAGGGGTC
TGAACAGGACGGACAGCAGCAGCAGTTTGAGAGGAAAGAGGCGCCGTCGT
CACGTGGTCCGGTCAAAATCTCTCTGCGGCTAACCGATACCACGCCGAAG
CTATCGGAGTGTGACGGAAGGTCTCCCACCTCTAGGGTTGGAGCGGCAGT
TCACCGTCCACCCGCTGGAGGCTCCTTGACATCCAGGCGCCGTCGTCACG
TGGTCCGGTCAAAATCTCTCTGCGGCTAACCGATACCACGCCGAAGCTAT
CGGAGTGTGACGGAAGGTCTCCCACCTCTAGGGTTGGAGCGGCAGTTCAC
CGTCCACCCGCTGGAGGCTCCTTGACATCCAGATCTGCACCAGCAGCAAT
AGAGGGGAGCGGGCGGGGTCCTAGGCCGAGCGGATCTGTTGGGCCGAAAA
GCGCCAGGAGAGCTCCGCCGAGTGCGGCGATTGTCATCTCTGTGACGGTC
AGAAGATTTCCTTACATGGAGATTTTTCGGATGGCTAGATTTATTCTTTA
GATCTGCACCAGCAGCAATAGAGGGGAGCGGGCGGGGTCCTAGGCCGAGC
GGATCTGTTGGGCCGAAAAGCGCCAGGAGAGCTCCGCCGAGTGCGGCGAT
TGTCATCTCTGTGACGGTCAGAAGATTTCCTTACATGGAGATTTTTCGGA
TGGCTAGATTTATTCTTTAG
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