mRNA_H-paniculata_contig2900.7908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2900.7908.1
Unique NamemRNA_H-paniculata_contig2900.7908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2900.7908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2900contigH-paniculata_contig2900:12547..13714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size448
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.1368086-CDS-H-paniculata_contig2900:12546..126781622929885.1368086-CDS-H-paniculata_contig2900:12546..12678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 12547..12678 +
1691481054.7268302-CDS-H-paniculata_contig2900:12546..126781691481054.7268302-CDS-H-paniculata_contig2900:12546..12678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 12547..12678 +
1622929885.1497738-CDS-H-paniculata_contig2900:13398..137131622929885.1497738-CDS-H-paniculata_contig2900:13398..13713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 13399..13713 +
1691481054.7371094-CDS-H-paniculata_contig2900:13398..137131691481054.7371094-CDS-H-paniculata_contig2900:13398..13713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 13399..13713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2900.7908.1prot_H-paniculata_contig2900.7908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2900 12547..13713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2900.7908.1

>prot_H-paniculata_contig2900.7908.1 ID=prot_H-paniculata_contig2900.7908.1|Name=mRNA_H-paniculata_contig2900.7908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
GPGAGKGNVGRGSGGGDSDDSDADRSAAGGSVPSNGRVRSLEAKLRGMDE
RRRRRASLRPSVCPPQSGHGHGAGFAHRHRVSACSVSTPSNNHNSNHNSN
HNSNHNNSSNSNTGGSGGSGRHRSSVCKPQRHTSGSETNVSGSSSRGKQ
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mRNA from alignment at H-paniculata_contig2900:12547..13714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2900.7908.1 ID=mRNA_H-paniculata_contig2900.7908.1|Name=mRNA_H-paniculata_contig2900.7908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-paniculata_contig2900:12547..13714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCCGGGAGCAGGAAAGGGTAACGTTGGGCGGGGCAGCGGCGGCGGTGA
CAGCGACGATTCCGACGCGGACCGTAGCGCAGCTGGGGGAAGCGTACCTT
CAAACGGACGTGTGCGTTCACTAGAAGCAAAGGTCAGTGAGTTCTTGTGC
TTATTGCCTGTCTCGAGATAGTCGGTGAGCGTCATCCAGCCCTCGGGAGG
ATTCTCTTCGTCTCTTCTTGGATTATACTCATCGGTTAGTGGCTCTTCGT
CTCGTATCTTCTATCTTGGATAGTGAAAAGAAGGTCGATATAGGGTGTTA
TGCAGGGAACAGGGAATTAGCAATCTTGCAACTGTCAGAAATATTCTCTC
CGTATGTATGCGTGTACTTACAATATGACAATGACCAAACAACAATATTG
ATATCCCCATCGCTAACCCTAACCCTAGCATAACACCCCTGCTTTCCTTG
CACGGAATATACAGTGCAACGTGGCCACGTTACCTCTGTACACAAACTTT
CGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTTCAATATGTAGACGGAT
GCGCTACGCTAGTAAGACACTTTTCTTTGGATTGAGGTTTTAACACTATA
TTTTCACTATCTATACAGCCCATCCGAGTACATGAGTTTTTCATATTTAA
TACACATATATATATATATATATGTGTGTGTGGGTGTATATATATATAAA
TTATGTAGGTGCACGAGTTGAGCGCAATTTTTTATCTAGGGGGAGCTTCT
AACATAAAAAAAAACAGGTGGCGTGTGTTTCTCACTGTTTTCTTCGAACT
GTTAATAGCATAACACATCTCTCTGTACACCGTTCACATACTTCGCACAC
AGCTTCGCGGCATGGATGAAAGGCGACGACGGCGAGCCTCCCTCAGGCCG
AGCGTCTGCCCTCCCCAGTCCGGACACGGACACGGAGCTGGCTTCGCCCA
CCGACATCGCGTCTCCGCCTGCAGCGTATCCACCCCCAGCAACAATCACA
ACAGCAATCACAACAGCAATCACAACAGCAATCACAACAACAGTAGCAAT
AGTAATACTGGCGGCAGCGGCGGCAGCGGCAGGCATCGCAGTAGCGTCTG
TAAACCCCAGAGGCATACTAGTGGCAGCGAGACGAATGTGAGCGGTAGCA
GTTCAAGGGGGAAGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2900:12547..13714+

>mRNA_H-paniculata_contig2900.7908.1 ID=mRNA_H-paniculata_contig2900.7908.1|Name=mRNA_H-paniculata_contig2900.7908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig2900:12547..13714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCCGGGAGCAGGAAAGGGTAACGTTGGGCGGGGCAGCGGCGGCGGTGA
CAGCGACGATTCCGACGCGGACCGTAGCGCAGCTGGGGGAAGCGTACCTT
CAAACGGACGTGTGCGTTCACTAGAAGCAAAGGGTCCGGGAGCAGGAAAG
GGTAACGTTGGGCGGGGCAGCGGCGGCGGTGACAGCGACGATTCCGACGC
GGACCGTAGCGCAGCTGGGGGAAGCGTACCTTCAAACGGACGTGTGCGTT
CACTAGAAGCAAAGCTTCGCGGCATGGATGAAAGGCGACGACGGCGAGCC
TCCCTCAGGCCGAGCGTCTGCCCTCCCCAGTCCGGACACGGACACGGAGC
TGGCTTCGCCCACCGACATCGCGTCTCCGCCTGCAGCGTATCCACCCCCA
GCAACAATCACAACAGCAATCACAACAGCAATCACAACAGCAATCACAAC
AACAGTAGCAATAGTAATACTGGCGGCAGCGGCGGCAGCGGCAGGCATCG
CAGTAGCGTCTGTAAACCCCAGAGGCATACTAGTGGCAGCGAGACGAATG
TGAGCGGTAGCAGTTCAAGGGGGAAGCAGCTTCGCGGCATGGATGAAAGG
CGACGACGGCGAGCCTCCCTCAGGCCGAGCGTCTGCCCTCCCCAGTCCGG
ACACGGACACGGAGCTGGCTTCGCCCACCGACATCGCGTCTCCGCCTGCA
GCGTATCCACCCCCAGCAACAATCACAACAGCAATCACAACAGCAATCAC
AACAGCAATCACAACAACAGTAGCAATAGTAATACTGGCGGCAGCGGCGG
CAGCGGCAGGCATCGCAGTAGCGTCTGTAAACCCCAGAGGCATACTAGTG
GCAGCGAGACGAATGTGAGCGGTAGCAGTTCAAGGGGGAAGCAG
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