mRNA_H-paniculata_contig2900.7907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2900.7907.1
Unique NamemRNA_H-paniculata_contig2900.7907.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2900.7907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2900contigH-paniculata_contig2900:10906..12540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size205
Cds size204
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2900.7907.1prot_H-paniculata_contig2900.7907.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2900 10906..12540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.9583108-CDS-H-paniculata_contig2900:10905..109291622929884.9583108-CDS-H-paniculata_contig2900:10905..10929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 10906..10929 +
1691481054.6902587-CDS-H-paniculata_contig2900:10905..109291691481054.6902587-CDS-H-paniculata_contig2900:10905..10929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 10906..10929 +
1622929884.973838-CDS-H-paniculata_contig2900:11513..116361622929884.973838-CDS-H-paniculata_contig2900:11513..11636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 11514..11636 +
1691481054.7035875-CDS-H-paniculata_contig2900:11513..116361691481054.7035875-CDS-H-paniculata_contig2900:11513..11636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 11514..11636 +
1622929885.0313053-CDS-H-paniculata_contig2900:12483..125401622929885.0313053-CDS-H-paniculata_contig2900:12483..12540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 12484..12540 +
1691481054.7150457-CDS-H-paniculata_contig2900:12483..125401691481054.7150457-CDS-H-paniculata_contig2900:12483..12540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 12484..12540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2900.7907.1

>prot_H-paniculata_contig2900.7907.1 ID=prot_H-paniculata_contig2900.7907.1|Name=mRNA_H-paniculata_contig2900.7907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
RLRQGNKLVKKVRAGRCLRKATRTSTKGALELGLWAANRPKEFVEEHVVA
SRREASQQRGKAGPSRTG
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mRNA from alignment at H-paniculata_contig2900:10906..12540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2900.7907.1 ID=mRNA_H-paniculata_contig2900.7907.1|Name=mRNA_H-paniculata_contig2900.7907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-paniculata_contig2900:10906..12540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTTCGACAGGGCAACAAGCTGGTACAGTCAGTATTTCCGCGAGCAAA
GAGGTACCTACACACTTGGGGAAAATTTTAGTCGCTCTTTGAGGCTGGTC
ACCACACTGATGAGCGGAAGCCAGAGTCCTGTAGCTACTGTCGTGAAAGG
GAACCCGATAGCCACAGCAATAATAATGTGCCCGCTCGGCATCGGGACTT
CGTAAGACGTTTTTGCTGCATGGTACTGAGTGGTGCATCAGTGTAACGTC
TACTCAGGGTCGGAAATCGAACGACAATAAATAGGACACGGCGATAATGT
CGGCTCGAAGACAAGACGTCCCATCGAAATCCCCGACATCGACAAATATC
AAACATTCGATACGATACCAAAATCAAACCCTGGTTACTGATTACACCAA
TACGTCTATATATACCAGTACAAACGATACGTCCACTGTTTCTCACCTAC
CAGGTATGCCATGAGTATACATACACACCTTTCGAAATAATCAAGTATTC
GCCACACGATTGAATCCTTACTAAAACTATGTGCTCTGTATTGTGGCGCA
GTGCCAGTGCCGATGCCAATACCACCGCCACTGCCAATGCCGAATTGATA
TGTTACAGGTGAAAAAAGTGCGAGCGGGGAGATGCTTACGTAAAGCTACG
AGGACCTCGACCAAAGGGGCACTCGAGCTCGGTCTCTGGGCAGCCAACAG
ACCCAAAGAGTTTGTTGAAGAACATGTGGTGGTGCGTGAAGCACTGTGAC
TCACGTTGGCTTTTCAACCTTTGCTGACGTTATTCCGGGGTTTTGGGAGC
ACGGGGTGCCCAAAATGGCCGGCAGCGCACGTACACTTGAAACAAACAGT
CTCTTTATCGCCTCTGAGTCAGAAACGAGCTCTCCCGAGACGTGGACCCT
GAAAGACACCAGTTTTATTAGCGATTGGCAGATCAAGAATAAATGAACAG
AGATGAAACCATAGAGCTGGCACTACTCACGATTCGACGAAATACAGTCT
TACGGTGTACGTCCTGGGCACAGCACCACGCCAACATAATAGACCTACGG
GAAAACCCCGCACAACGGCATGTCTAAGGGTGAACGTTGACAAAAGGCAT
TTTATGTAAACAAACCCAACACAAGTTTTCGGGTCGGCATTGCTTATTTG
TCGCCACGAACCTCAGTCAGCAACACCTCTTGTACGCCTTCACGCGTTTG
TCTATTCGTATTGCCGCATCCATACCAACATGTCCGAAGCTTCGGCGAAG
TACCAACAGACAGCCAAACAAAGTGGTCAGATATCAAAATCACGACGCGT
TACCTGAAGAATCAGCCTTTCCCCCCCCCCTCAACTGATTGACTTGTGAA
ATCAGTCATTCAGCAGTATGAAATTGACTGAGTATACCTCCAATATCGGA
AATCGCTCGGATAGGAACAAGGCCCCGTTCTCCTGAGGACTTATCGTCAA
CTGTCTAATAACAACGGCATAAAAGATATGAGTACGCCCCCCTCCCGCCC
CCCGCCCCTCGCTTATGTTTTGCTTTGAATAATCCCGACCTCTTTCTATG
TAAAAACCCGCGGCAACAACATCAACAGGCATCTCGGCGAGAAGCATCTC
AGCAACGAGGAAAGGCTGGACCTTCTCGAACCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2900:10906..12540+

>mRNA_H-paniculata_contig2900.7907.1 ID=mRNA_H-paniculata_contig2900.7907.1|Name=mRNA_H-paniculata_contig2900.7907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig2900:10906..12540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTTCGACAGGGCAACAAGCTGCGCCTTCGACAGGGCAACAAGCTGGT
GAAAAAAGTGCGAGCGGGGAGATGCTTACGTAAAGCTACGAGGACCTCGA
CCAAAGGGGCACTCGAGCTCGGTCTCTGGGCAGCCAACAGACCCAAAGAG
TTTGTTGAAGAACATGTGGTGGTGAAAAAAGTGCGAGCGGGGAGATGCTT
ACGTAAAGCTACGAGGACCTCGACCAAAGGGGCACTCGAGCTCGGTCTCT
GGGCAGCCAACAGACCCAAAGAGTTTGTTGAAGAACATGTGGTGGCATCT
CGGCGAGAAGCATCTCAGCAACGAGGAAAGGCTGGACCTTCTCGAACCGG
GGCATCTCGGCGAGAAGCATCTCAGCAACGAGGAAAGGCTGGACCTTCTC
GAACCGGG
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