mRNA_H-paniculata_contig290.7904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: D7G7V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V0_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 1.790e-128 Identity = 195/248 (78.63%), Postives = 215/248 (86.69%), Query Frame = 2
Query: 644 PEDKAATAEGWLPEELSVITNDPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGE 1387
P A AE W ++LS I NDP KL+ LN VVFLFAAFAA+KLATVD D++RGWTWYE+LLRVPGDNFYRYEATVSE+PIVTKA TSCVAYGLGDFTAQLFTGK +E +DL+RT RSATAGLLIHGPLCH+WI+LMQ YLDF GAWWNF+PKVIADQTVWSVFLNAAYSTMIMSLQG+ EVW +V++ AWPALTSSWRFWPLIHC SFS IP DLKLLFIDCMEIIWVTILSTVAN DR+ +
Sbjct: 28 PLQDALPAE-W-QKKLSQINNDPAKLTFFLNAAVVFLFAAFAAFKLATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIVTKAFTSCVAYGLGDFTAQLFTGKTLEDMDLMRTARSATAGLLIHGPLCHFWIELMQTYLDFDGAWWNFIPKVIADQTVWSVFLNAAYSTMIMSLQGLPKEEVWGEVKSKAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSTVANGDRQAD 273
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A6H5KZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF3_9PHAE) HSP 1 Score: 407 bits (1046), Expect = 5.210e-128 Identity = 204/295 (69.15%), Postives = 232/295 (78.64%), Query Frame = 2
Query: 503 GRSCRVRERRETTLTNPQRGWAAQRVAAGGLRLESADRDMRSRIYMVPEDKAATAEGWLPEELSVITNDPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGE 1387
GRS R R+R + T+ A+ V G S + D +M + A W ++LS I DP KL+ +N VVFLFAAFAA+KLATVD D++RGWTWYE+LLRVPGDNFYRYEATVSE+PIVTKALTSCVAYGLGDFTAQLFTGK +E +DL+RT RSATAGLLIHGPLCH+WI+LMQ YLDF GAWWNF+PKVIADQTVWSVFLNAAYSTMIMSLQG+ EVW +V++ AWPALTSSWRFWPLIHC SFS IP DLKLLFIDCMEIIWVTILSTVAN DR+ +
Sbjct: 102 GRSARSRQRGRGSSTSKLSMMAS--VEDAGDASSSLEGDEEVEPFMPAPLQGALPAEW-QKKLSQINKDPAKLTFFMNAAVVFLFAAFAAFKLATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIVTKALTSCVAYGLGDFTAQLFTGKTLENMDLMRTARSATAGLLIHGPLCHFWIELMQTYLDFDGAWWNFIPKVIADQTVWSVFLNAAYSTMIMSLQGLPKEEVWGEVKSKAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSTVANGDRQAD 393
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A836CBY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY7_9STRA) HSP 1 Score: 304 bits (779), Expect = 1.840e-90 Identity = 140/228 (61.40%), Postives = 181/228 (79.39%), Query Frame = 2
Query: 701 TNDPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQG-MRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDRE 1381
++DP++ + LN++VV A YK+ TVD D+SRGWT +EI+LRVP DN + YE++V+ N + TKA TS VAYG+GDF AQ G+ +ET+DL RT RSA AGL +HGP+CH+WI+ MQ LDF GAWWNF+PKV+ADQTV+S+ LNAAY++ ++ L G +P E+W+ V+TT PA+TSSWRFWPLIHC+SFST+IP D KLLFID MEIIWVTILS+VANKD+E
Sbjct: 116 SSDPKRRNAVLNLLVVGALVGGALYKVVTVDADLSRGWTIWEIILRVPSDNLWSYESSVTHNAVPTKAATSMVAYGIGDFLAQCLRGETLETIDLKRTARSAAAGLFVHGPMCHFWIEWMQANLDFNGAWWNFLPKVVADQTVYSLVLNAAYTSFVIGLSGEKKPSEIWDYVKTTCVPAITSSWRFWPLIHCLSFSTLIPKDFKLLFIDLMEIIWVTILSSVANKDQE 343
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A061RIB7_9CHLO (Protein Mpv17 (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RIB7_9CHLO) HSP 1 Score: 265 bits (676), Expect = 3.370e-75 Identity = 136/273 (49.82%), Postives = 178/273 (65.20%), Query Frame = 2
Query: 662 TAEGWLPEELSVITNDPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGEVSMEGATDGVDGDAEAIPPPVLLE--REPIH 1474
+A W + + IT A+N VV L A A YK VDLD +RGWT E +LR D+F Y+ + S +P +TKA TS VAY LGDF AQ F G+ + TVDL R+ RS AG IHGPLCH WI+ M+ +L FGGAW++ KVIADQTVWS+FLN Y++ I++LQG RPP++ E+V+ T WPAL+S WRFWP +H VSFS +P +LKLLFID MEI+WVTIL++V N+ E +V T ++ EA P +E +E +H
Sbjct: 87 SANHWAEKNRNAITA-------AINGTVVALIVAGATYKAVEVDLDYARGWTLMEFMLRTARDDFVMYQHSASLHPFITKACTSGVAYSLGDFAAQTFQGRTVFTVDLKRSLRSGIAGFFIHGPLCHLWIEWMEAHLSFGGAWYSTFAKVIADQTVWSIFLNTMYTSTILALQGTRPPKIAEEVRLTWWPALSSGWRFWPFVHTVSFSPYVPAELKLLFIDTMEIVWVTILASVVNRKDEEKVPQVSCT--IEPGIEASVPYATIEMAKEGLH 350
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A7S0PIM0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0PIM0_MICPS) HSP 1 Score: 261 bits (668), Expect = 7.260e-74 Identity = 125/228 (54.82%), Postives = 162/228 (71.05%), Query Frame = 2
Query: 698 ITNDPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDRE 1381
I ++ +++ ALNV++V A A +++ VD D+S+GWT +EIL +P DN Y+ +V +NP+ TKALTS VAY LGDFT QL GK I TVDL R+ RS AG LIHGPLCHYW+Q + L F GA W KVIADQT WS+FLN+AY+T IMSLQGM P + ++Q T W A+T+ WRFWP +H ++FS IIP D KLLF+DC+E++WVTILS N+D E
Sbjct: 96 IDDNSVEVNAALNVLIVGSVAFGAVFQIVEVDSDISKGWTAWEILRNIPRDNLEAYQQSVFDNPLPTKALTSGVAYTLGDFTCQLSQGKKITTVDLKRSLRSGIAGFLIHGPLCHYWLQWTEENLSFDGALWAIPVKVIADQTAWSLFLNSAYTTCIMSLQGMGPERIKGEIQATWWNAITAGWRFWPFVHTLTFSPIIPQDFKLLFVDCVEVVWVTILSAAVNRDSE 323
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A7S0SAT7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SAT7_9CHLO) HSP 1 Score: 261 bits (666), Expect = 9.780e-74 Identity = 132/282 (46.81%), Postives = 177/282 (62.77%), Query Frame = 2
Query: 566 AAQRVAAGGLRLESADRDMRSRIYM-VPEDKAATAEGWL----PEELSVITN-----DPRKLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDRE 1381
+A++ A LR S R+ + D++ T G + PE + N + ++S +N+ +V A + +++ VD D+S GWTWYEIL +P DN Y+ V +PI KALTS VAY LGDFT QL GK + TVDL R+ RS AG LIHGPLCHYW+Q L FGGAWW KV+ADQTVWS+FLN AY+T IMSLQGMRP + ++ T + A+++ WRFWP +H ++FS IIP D KLLF+DC+E++WVTILS N+D +
Sbjct: 53 SARKTPAPLLRASSRGHRRLHRVALRASTDESGTTVGVMDAGSPESVKAKFNAFFEENALQISAFVNIAIVGSVAFGSFFRIVEVDSDISTGWTWYEILRNIPEDNLNAYQQAVFAHPIPVKALTSGVAYTLGDFTCQLSQGKSLPTVDLKRSLRSGVAGFLIHGPLCHYWLQWTDLNLSFGGAWWAIPVKVLADQTVWSLFLNTAYTTCIMSLQGMRPANIKREIDATWYNAISAGWRFWPFVHLLTFSPIIPQDFKLLFVDCVEVVWVTILSAAVNRDSD 334
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: C1N0U7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0U7_MICPC) HSP 1 Score: 255 bits (652), Expect = 9.460e-72 Identity = 117/222 (52.70%), Postives = 153/222 (68.92%), Query Frame = 2
Query: 716 KLSLALNVVVVFLFAAFAAYKLATVDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDRE 1381
K+ LN+ +V A A + + VD D+S GWTWYE+L +P DN Y++ V +P+ KA+TS VAY LGDFT QL GK IETVDL R+ RS AG LIHGPLCHYW+ + L F GAW+ K+IADQT WS+FLN+AY+T IMSLQG P + ++Q T + A+++ W+FWP +H +FS+IIP D KLLF+DC+E+IWVTILS N+D E
Sbjct: 99 KIDALLNIAIVGSVAGGAVFGIVEVDSDISTGWTWYEVLRNIPQDNLAAYQSAVFAHPLPVKAMTSGVAYTLGDFTCQLSQGKTIETVDLKRSARSGVAGFLIHGPLCHYWLMWTEANLSFDGAWYGTPVKIIADQTAWSLFLNSAYTTCIMSLQGFGPRRIKNEIQATWYNAISAGWKFWPFVHAFTFSSIIPQDFKLLFVDCVEVIWVTILSAAVNRDAE 320
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A7S2B582_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B582_9STRA) HSP 1 Score: 246 bits (627), Expect = 1.810e-68 Identity = 109/199 (54.77%), Postives = 147/199 (73.87%), Query Frame = 2
Query: 827 ILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGEVSMEGATDGVDG 1423
+LLR+P D ++YEA V NP+ KA TS VAY +GDF +Q++ G+ ++T+DL R+ RS TAG + HGPLCHYW+Q M+ YLDF GAWW KV+ADQTVWS++LNA YS +I SL P +VW+ V+ T+WPAL +SWRFWP +HC+SFS +P DLKLL++D MEI+WVT+LS VAN D++ ++ + VDG
Sbjct: 132 LLLRLPSDLIHQYEALVPTNPVFYKACTSGVAYTIGDFVSQVYQGRTLKTLDLARSARSGTAGFVGHGPLCHYWMQFMETYLDFNGAWWGTGVKVLADQTVWSIYLNAMYSFLIGSLALRNPKDVWQDVKATSWPALRTSWRFWPFVHCISFSHAVPLDLKLLWVDVMEIVWVTLLSKVANDDKDANMASDKTACVVDG 330
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A7S3ZXF3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXF3_9STRA) HSP 1 Score: 240 bits (613), Expect = 2.150e-66 Identity = 120/224 (53.57%), Postives = 155/224 (69.20%), Query Frame = 2
Query: 770 AYKLAT-VDLDVSRGWTWYEILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGEVSMEGATDGVDGDAEAI 1438
AY+LAT VDL L ++PGD+ YEA V NP+ KA TS VAY LGDF +Q++ G+ ++TVDL R+ RS AG + HGPLCHYW+ M+ YLDF GAW+ KV+ADQTVWS++LNA YS +I + P EVW+ VQ T+WPAL SSWRFWP +HC+SFS ++P DLKLL++D MEI+WVTILS VAN D+E + A G++ DAE +
Sbjct: 143 AYRLATSVDL-----------LAKLPGDSIRGYEALVPTNPVFYKACTSGVAYTLGDFVSQVYQGRTLKTVDLARSARSGAAGFVGHGPLCHYWMVFMETYLDFDGAWYGTGVKVLADQTVWSLYLNACYSFLIGTFALRDPREVWKDVQATSWPALRSSWRFWPFVHCISFSHLVPLDLKLLWVDVMEIVWVTILSKVANDDKEARL----AERGLEEDAEVL 351
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Match: A0A7S3TTJ2_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TTJ2_EMIHU) HSP 1 Score: 240 bits (612), Expect = 3.860e-66 Identity = 129/298 (43.29%), Postives = 175/298 (58.72%), Query Frame = 2
Query: 578 VAAGGLRLESADRDMRSRIYMVPEDKAATAEGWLPEELSVITNDPRKLSLALNVVVVFLFAAFAAYKLATVDL-------------DVSRGWT-WY---EILLRVPGDNFYRYEATVSENPIVTKALTSCVAYGLGDFTAQLFTGKDIETVDLLRTGRSATAGLLIHGPLCHYWIQLMQNYLDFGGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGMRPPEVWEQVQTTAWPALTSSWRFWPLIHCVSFSTIIPTDLKLLFIDCMEIIWVTILSTVANKDREGEVSMEGATDGVD 1420
+ A RL+ D + I+ E+ AA A L V+ N++V+ F Y L D+ DV G+ W +++LR+PG+ ++YEA V NP+ KA TS VAY GDF +Q++ G+ + ++DL R+ RS AG + HGPLCHYW+ M+ YLDFGGAWW KV+ADQTVWS++LNA YS +I +L P +VW V+ T+WPAL SSWRFWP +HC+SFS +P DLKLL++D MEI+WVTILS VAN+D E + GVD
Sbjct: 105 LTAQNERLQRMADDAAAEIFRA-ENLAAAARRSFLNNLGVV-----------NLLVISTFGIGIVYSLLETDIRAIFALYYFDLGPDVYPGFARWVVALDLILRLPGELLHQYEALVPTNPVFYKACTSGVAYTFGDFVSQIYQGRTLASLDLPRSFRSGAAGFIGHGPLCHYWMLTMEQYLDFGGAWWGTGVKVLADQTVWSLYLNAMYSFLIGTLAFRAPGDVWRDVRATSWPALRSSWRFWPFVHCISFSHAVPLDLKLLWVDVMEIVWVTILSRVANQDESAEQPVVAEAFGVD 390 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig290.7904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig290.7904.1 >prot_H-paniculata_contig290.7904.1 ID=prot_H-paniculata_contig290.7904.1|Name=mRNA_H-paniculata_contig290.7904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=394bp MMVSSPPSRRTCAWAVGCCLVATLSISSCDVHVTAFRSTALFPQGPSSIKback to top mRNA from alignment at H-paniculata_contig290:25289..32044- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig290.7904.1 ID=mRNA_H-paniculata_contig290.7904.1|Name=mRNA_H-paniculata_contig290.7904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6756bp|location=Sequence derived from alignment at H-paniculata_contig290:25289..32044- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig290:25289..32044- >mRNA_H-paniculata_contig290.7904.1 ID=mRNA_H-paniculata_contig290.7904.1|Name=mRNA_H-paniculata_contig290.7904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at H-paniculata_contig290:25289..32044- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |