mRNA_H-paniculata_contig290.7901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: D7G7V3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V3_ECTSI) HSP 1 Score: 457 bits (1175), Expect = 6.410e-153 Identity = 224/316 (70.89%), Postives = 267/316 (84.49%), Query Frame = 3
Query: 219 PTQTGVEMLLGVETSAGLLGLGALGAMRAFTSSITPKRVRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMALGAEVLLPPLTVETVMVSVE 1166
P Q ML G++ G+ GL AL A+R FT+SITPKRVRVVTDIDDTVKSSGNKRL G+PLGGIDAQY RG FYPGVFQFSLEL+RYRVPSWQEPLSVAVLTARAREFLFALEIGD+HEI+ EFR+CG+RN +K WGRGPVLYGSVKEW+C SRKS RKARNF L+EDD +GG GRP GAEGGY+F+GDTGEGD RAGE+MS ++P+R+RAVFLHVVSD +Q V +P+D+ VN VPVVYFRTYVGAAVKAV+LGLMDK GLENVI A++A++ VP+ SSKW+D+N+D+ MA +E LP + V+T+ +++
Sbjct: 59 PLQRAASML-GMDAGLGVAGLSALSAVRLFTASITPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYRRGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAMTKVPRQSSKWEDINRDLMMAQTSETQLPSIGVKTLTSALD 373
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A835YMG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG4_9STRA) HSP 1 Score: 281 bits (719), Expect = 9.600e-87 Identity = 150/261 (57.47%), Postives = 184/261 (70.50%), Query Frame = 3
Query: 333 VRVVTDIDDTVKSSGNKRLLG-IPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQAL--SAVPQTSSKWKDLNQDIAMA 1106
+RVVTDIDDTVKSSGN RL G IPLGGIDAQY RG+FYPGVFQF LELA + VP PL +AVLTARA+E LFALE+ H +S+ +R+CG N ++ WG GP+LYGSVKEWIC +RKS RK +NF +L+E DG+ R E YVF+GDTGEGD +AG M +P LRA+FLH+V D +P D VN VPV++F+TYVGAA KA + GL+++ +E VIA A + L S P+TSSKW DL DI A
Sbjct: 3 LRVVTDIDDTVKSSGNLRLAGVIPLGGIDAQYERGQFYPGVFQFGLELAAHGVPRGLMPLPIAVLTARAKELLFALELDMEHPVSVAYRQCGAENGMEGWGLGPILYGSVKEWICWTRKSRRKVKNFRRLMELDGRNAIARGYMTE--YVFIGDTGEGDFKAGIKMCENFPRELRALFLHMVYCV--DDVCKVPEDYAVNGVPVLFFKTYVGAARKAYEAGLLNRYAVERVIAKAVEELEYSGAPRTSSKWSDLEADIEAA 259
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A835YPL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL0_9STRA) HSP 1 Score: 272 bits (696), Expect = 7.750e-83 Identity = 146/260 (56.15%), Postives = 177/260 (68.08%), Query Frame = 3
Query: 339 VVTDIDDTVKSSGNKRLLG-IPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADA--RQALSAVPQTSSKWKDLNQDIAMAL 1109
VVTDIDDTVKSSGN RL G IPLGGIDAQY RG+FYPGVFQF+LELA + P PL VAVLTARA+EFLFALE+ H +S+ +R+CG N WG GPVLYGSVKEWI +RK RK +NF +L+E DG H G Y+F+GDTGEGD +AG M +P LRA+F+H VS + P D +N VPV++F+TYVGAA KA + GLMDKAG++ VI + LS P+ SKW+D+ DI AL
Sbjct: 38 VVTDIDDTVKSSGNLRLAGLIPLGGIDAQYERGQFYPGVFQFALELAAHGTPQGLLPLPVAVLTARAKEFLFALELKTEHPVSIAYRQCGTDNGFDGWGLGPVLYGSVKEWIVWTRKGRRKFKNFKRLMEIDGT--HAAARGCATDYIFIGDTGEGDTKAGVKMCETFPRELRAMFMHAVS--CDSEYCITPDDYTINGVPVLFFKTYVGAARKAYEAGLMDKAGVQRVIDRSVMELELSGAPRDCSKWEDMEMDIEQAL 293
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A1E7FEW2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW2_9STRA) HSP 1 Score: 248 bits (634), Expect = 2.470e-73 Identity = 131/264 (49.62%), Postives = 176/264 (66.67%), Query Frame = 3
Query: 321 TPKRVRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQE--PLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMA 1106
T + +V++D+DDT+KSSG + G+ LGGID QY RG FYPGV +F L+L+ Y++ P ++A+LTARA EF ALEI D ++S+ R G++ ++ WG GPVLYGSV EWI RK LRK NF +L++ D P G Y++VGD GE D AGE M +YPE ++AVFLHVV+D + IP K +N P+V+FRTYVGAAV AVQLGLM+ GL++VI A + LS VP+TS KWKD+ +D++ A
Sbjct: 58 THRFTQVISDVDDTLKSSGGVNVGGVALGGIDVQYGRGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQD-------PAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPI-IPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRA 313
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A6V2PZW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PZW2_9STRA) HSP 1 Score: 248 bits (634), Expect = 3.260e-73 Identity = 142/291 (48.80%), Postives = 182/291 (62.54%), Query Frame = 3
Query: 300 RAFTSSITPKR--------VRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRV---PSWQE-----------PLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMA 1106
RA TSS+ + +V++D+DDT+KSSG + G+ LGGID QY RG FYPGVFQF LEL+ +++ P+ E P VAVLTARA EF ALE+ + +++ FRK G++ ++ WG GPVLYGSV EW+ RK LRK NF +L+E D P G YV+VGDTGE D AGE M +YPE ++AVFLHVVSD IP K +N P+V+FRTYVGAA KAVQLGLM + GL VI +A AL VP+++ KW DL +DI+ A
Sbjct: 42 RAATSSLNMAQQQELYHPFTQVISDVDDTLKSSGGVNVAGVALGGIDVQYERGDFYPGVFQFMLELSMHKLGEGPNESEGDDTGEEDRLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIEDWGLGPVLYGSVAEWVIQDRKGLRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDA---PFPRIPPPKLINGRPIVFFRTYVGAAAKAVQLGLMYEEGLMRVIVEAEAALEGVPRSNEKWLDLERDISEA 322
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A7S0UKK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKK8_9STRA) HSP 1 Score: 246 bits (628), Expect = 1.260e-72 Identity = 128/257 (49.81%), Postives = 171/257 (66.54%), Query Frame = 3
Query: 336 RVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMA 1106
+V++D+DDT+KSSG + G+ LGGID QY RG FYPGV +F L L++ + P ++A+LTARA EF ALEI + ++++ R G++ + WG GPVLYGSV EWI RK LRK NF +L+E D P G Y++VGDTGE D AGE M +YPE ++AVFLHVV+D + + IP K +N PV++FRTYVGAA+ AVQLGLM GL++VI A + LS VP+ S KWKD+ +D+A A
Sbjct: 55 QVISDVDDTLKSSGGVSVGGVALGGIDVQYDRGDFYPGVGEFMLALSQCGLTEEVNPANIAILTARAEEFKAALEIKEGSKLAVALRSAGEKVGINGWGVGPVLYGSVAEWIAQDRKGLRKFTNFERLIEQD-------PTGTIFQYIYVGDTGELDQEAGETMLREYPEVMKAVFLHVVTDDVEGPPL-IPPPKLINGHPVIFFRTYVGAAIDAVQLGLMSLDGLQSVIEAATEKLSDVPENSDKWKDIRKDMARA 303
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: W7UBU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBU9_9STRA) HSP 1 Score: 247 bits (630), Expect = 1.360e-71 Identity = 133/281 (47.33%), Postives = 182/281 (64.77%), Query Frame = 3
Query: 333 VRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMALGAEVLLPPLTVETVMVSVEKSG 1175
++V+TDIDDTVKSSG RL+G+ LGGID QY RG++YPG FQF+LEL+R+ VP +EP VAVLTARAREF FALE+ SH++ + G N ++ WG G VLYGSVKEW+C SRK LRK RNF L D R + YVFVGDTGE D +AGE M +YP R++A+F+H VS++ + + P D+ + +VPV+YFRTYVGAAVKA +LGL+ +G+E V+A + + + + K + A A ++ + + + K+G
Sbjct: 106 LQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQD------RLDRTD--YVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSES--RPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAEAFMGRSKAG 376
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A7S4CYL7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CYL7_9EUGL) HSP 1 Score: 248 bits (633), Expect = 3.750e-71 Identity = 139/261 (53.26%), Postives = 172/261 (65.90%), Query Frame = 3
Query: 333 VRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQEPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAV-PQT---SSKWKDLNQDIAM 1103
++V+TDIDDTVKSSG + GIPLGGID QY RG FYPGVF+F LELA Y + PLSVAVLTARAREFLFALE+ +SH I FR G + + WG G VLYGSV+EW+C RKS RK NF L+ P A +VFVGDTGE D AGE+M ++P ++A+FLHVV+ +P DK +N PVV+FRTYVGAA KAV+ GL+ GL V+ AR L + P++ SS+W DLN+DIA+
Sbjct: 215 LQVITDIDDTVKSSGGVKFGGIPLGGIDTQYRRGLFYPGVFRFMLELASYATT--EAPLSVAVLTARAREFLFALELDESHAICKAFRDTGRASGHEDWGIGEVLYGSVQEWVCQGRKSWRKVENFKLLLSS-------LPPDAARRFVFVGDTGELDQEAGEIMLEEFPSCMQALFLHVVAPDPALVPAPLPRDKLINGAPVVFFRTYVGAARKAVKYGLLGVDGLAAVVEAARADLERIEPESAGGSSRWADLNRDIAL 466
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A7S2IAS8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAS8_9STRA) HSP 1 Score: 243 bits (620), Expect = 5.110e-71 Identity = 133/270 (49.26%), Postives = 172/270 (63.70%), Query Frame = 3
Query: 336 RVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQE-------------PLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMA 1106
+V++D+DDT+KSSG + G+ LGGID QY+RG+FYPGVFQF LEL+ + + + P VAVLTARA EF ALE+ + +++ FRK G++ + WG GPVLYGSV EW+ RK +RK NF +L+E D P G YV+VGDTGE D AGE M +YPE ++AVFLHVVSD +P K +N PVV+FRTYVGAA +AVQLGLM + GL VI +A AL VP ++ KW DL +DI+ A
Sbjct: 74 QVISDVDDTLKSSGGVTVAGVALGGIDIQYTRGEFYPGVFQFMLELSMPTLDNDDDENDTENEKSQFLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIDDWGLGPVLYGSVAEWVIQDRKGMRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDA---PFPRVPPPKLINGRPVVFFRTYVGAAARAVQLGLMQEEGLMRVIVEAEAALKGVPTSNEKWLDLERDISEA 333
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Match: A0A448ZMT4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMT4_9STRA) HSP 1 Score: 241 bits (615), Expect = 2.670e-70 Identity = 131/267 (49.06%), Postives = 170/267 (63.67%), Query Frame = 3
Query: 312 SSITPKRVRVVTDIDDTVKSSGNKRLLGIPLGGIDAQYSRGKFYPGVFQFSLELARYRVPSWQ--EPLSVAVLTARAREFLFALEIGDSHEISMEFRKCGDRNNLKAWGRGPVLYGSVKEWICGSRKSLRKARNFAKLVEDDGQGGHGRPGGAEGGYVFVGDTGEGDARAGELMSVQYPERLRAVFLHVVSDTMRQDTVGIPVDKEVNNVPVVYFRTYVGAAVKAVQLGLMDKAGLENVIADARQALSAVPQTSSKWKDLNQDIAMA 1106
S P +V++D+DDT+KSSG + G+ LGGID QY RG FYPGV +F L ++ Y +P P +A+LTARA EF ALEI + ++++ R G + + WG GPVLYGSV EWI RK LRK NF +L++ D P G YV+VGD GE D AGE M +YPE ++AVFLHVV+D T IP K +N P+V+FRTYVGAAV AVQLG+MD GL+ V A + L+ VP+TS KW+DL +D+A A
Sbjct: 68 SRFRPPFTQVISDVDDTLKSSGGVNVGGVALGGIDVQYERGDFYPGVGEFMLGMSLYGLPKEDVTSPAKIAILTARAEEFKAALEIKEDSKLAVALRSAGVKAGIDGWGIGPVLYGSVAEWIVQDRKGLRKFTNFERLIQQD-------PTGMIFQYVYVGDVGELDQEAGETMLREYPEVVKAVFLHVVTD-QADVTPIIPAPKYINGRPLVFFRTYVGAAVDAVQLGMMDLLGLKAVAEAAIEKLAGVPKTSDKWEDLQKDLARA 326 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig290.7901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig290.7901.1 >prot_H-paniculata_contig290.7901.1 ID=prot_H-paniculata_contig290.7901.1|Name=mRNA_H-paniculata_contig290.7901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp MTAPHHRRPLKIATTAIMASLFVSTSAFVRPHFRAFSVGRLARCRQRHSSback to top mRNA from alignment at H-paniculata_contig290:5734..10291+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig290.7901.1 ID=mRNA_H-paniculata_contig290.7901.1|Name=mRNA_H-paniculata_contig290.7901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4558bp|location=Sequence derived from alignment at H-paniculata_contig290:5734..10291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig290:5734..10291+ >mRNA_H-paniculata_contig290.7901.1 ID=mRNA_H-paniculata_contig290.7901.1|Name=mRNA_H-paniculata_contig290.7901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig290:5734..10291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |