mRNA_H-paniculata_contig29.7899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29.7899.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI) HSP 1 Score: 724 bits (1870), Expect = 2.030e-238 Identity = 440/903 (48.73%), Postives = 519/903 (57.48%), Query Frame = 1
Query: 1 QALELLAARENELLSQEDKERRDEEETGGDVTKAEEALLIAENLHHTLSTVGNKAEPIGVVRGGGVGVSTASGGEDGAGESGHDRQLMEAAMEVVKQVNRVGDLKLSLEERQRALSITRSHLAAVRREAAVEKTAQEEKRRFEAHRPKRIPPAPWRFDMVASGVNIRTYRSANMMAKDVSLRAWIVIPSTLRPWCGGGDPEDSGMYSEVWESLGFLPSRDPMFVRETLDVTVLIDHLDATLTRAQYATILAIIMDNFPEPWSVCPPVIEWPIPDPDVTQGVCRDPLKGRHTAQSIPVYARRVTLKICEDEDAFFFIPHEEGGVLDHRRRDWTQKHRGIRPPQR----GAPEAEGAALGIGSAXXXXXXRSRRVSMVVSSDHGDREVGEQKSRERGLSQASDTSASSRLSD-----LEREIQAMASNLDGFSDDGDTEPDESDDEANESAAKVEVKVKNQSVAHIGSNSQGLNPSDSTAVDPRDQVITDNLRKSDARGSAEGGVSDGVKAASPLREEDGVPELRSHRVDISGSSFTGSDFVDTSSFYSGGPDVDSPPTRPIALIDTNEFFLVIDKKFMNGGMAIACGAGTITITDLSDDGRSMDQNGIGDSTLYGPDGP------------------AQGGGAATGAEIVSPLVSTGNVHVHGTGRGPKHPGWGFGYNGSDPRVRFEPQIWYDMQMATDYKRCSIFVSDTRVVALAEGLLGVKAYFVEPVTDFRTRDRMLRPYRYAEVRPNNLDVELVLANAYICHPESQNDCATHYGSSSSSNSGIGTKGKQGSTFKASAGRAAVVHADLTLTQIWRGMPETGPGSSLLSVTALATSVFLAPLSEPCPPQPGEALSLVTPLLVSVHLETVTAAPSWRRSGPAERWAGMQGGERTRAGRKLAAA 2628
QALE L ARE+EL+SQED+E E +T ++ AE AL +AE L GG T GG + A M+V QVNRVGDLKLSL+ER L RS L +VRREA E+TAQ EK RFEAHRP R+PPAP RFDMVASGV IR+YRSA+++A+D+SLRAW+V+ + LRPWCGGG ++SGM+ VW+SLGFLP+RDPMF +E LDVTVLID LDA+LTR+QY+TI++I+MDNFPEPWS+CPPVIEWP DP+V+QGVCRDPL+GR TAQS+PVYARR+ L + E+E+A+FF P+EE LDH RRDW K R R P G +A S D GD VG++++ S AS LE+EIQA+A NLDGFSD+G +P P LR PP RPIA ID EFFL DKK+M GG+A+ACGAG+I+I DLS+ G + G E+VSPLV G GR +HPGWGFGYNG DPRV FEP +WYDM+MATDYKRCS+F+SD RVVALA GL G+K++F+EPV +FR RDRMLRP+RY EVRPNN DVE+VLANAYIC PESQ DC H G G A V HADLTLTQ WRGMP+TGPGSSLLS TALATSVFLAPLS+P PP GEALSLVTPLL S+ LETVTAAPSWR +GPAERWAGMQGGERT+AGRKLAAA
Sbjct: 676 QALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAXXXXXXXXXADGG-----TGDGGR------------VSAVMDVFNQVNRVGDLKLSLDERVETLKRVRSRLGSVRREANAERTAQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSENEEAYFFAPNEE--PLDHHRRDWVSKRRAEEAASRRKLSAVPAVANGDGGEQNAFDDALPGDHYDDDNASYDLGDDVVGDEEADVEEGSHASGXXXXXXXXXXXXXXLEQEIQALAGNLDGFSDEGRLDP---------------------------------------------------------------------------------PPLR-------------------------------PPPRPIAAIDFREFFLGFDKKWMAGGVALACGAGSISIRDLSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSWSAKEEDGVELVSPLVWRGGGDG---GRESRHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDVRVVALARGLSGLKSFFLEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLANAYICLPESQWDCYAHAG---------------GXXXXXXXXPAVVAHADLTLTQQWRGMPQTGPGSSLLSATALATSVFLAPLSDPSPPPAGEALSLVTPLLASIRLETVTAAPSWRMAGPAERWAGMQGGERTKAGRKLAAA 1429
BLAST of mRNA_H-paniculata_contig29.7899.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE) HSP 1 Score: 747 bits (1929), Expect = 1.500e-236 Identity = 507/975 (52.00%), Postives = 600/975 (61.54%), Query Frame = 1
Query: 1 QALELLAARENELLSQEDKERRDEEETGGDVTKAEEALLIAENLHHTLSTVGNKAEPIGVVRGGGVGVSTASGGEDGAGESGHDRQLMEAAMEVVKQVNRVGDLKLSLEERQRALSITRSHLAAVRREAAVEKTAQEEKRRFEAHRPKRIPPAPWRFDMVASGVNIRTYRSANMMAKDVSLRAWIVIPSTLRPWCGGGDPEDSGMYSEVWESLGFLPSRDPMFVRETLDVTVLIDHLDATLTRAQYATILAIIMDNFPEPWSVCPPVIEWPIPDPDVTQGVCRDPLKGRHTAQSIPVYARRVTLKICEDEDAFFFIPHEEGGVLDHRRRDWTQKHRGIRPPQR----GAPEAEGAALGIGSAXXXXXXRSRRVSMVVSSDHGDREVGEQKSRERGLSQASDTSASSRLSD----LEREIQAMASNLDGFSDDGDTEPDESDDEANESAAKVEVKVKNQSVAHIGSNSQGLNPSDSTAVDPRDQVITDNLRKSDARGSAEGGVSDGVKAASPLREEDGVPELRSHRVDISGSSFTGSDFVDTSSFYSGGPDVDS--------PPTRPIALIDTNEFFLVIDKKFMNGGMAIACGAGTITITDLSDDGRSMDQNGIGDSTLYGPDGPAQGGGAATGAEIVSPLVSTGNVHVHGTGRGPKHPGWGFGYNGSDPRVRFEPQIWYDMQMATDYKRCSIFVSDTRVVALAEGLLGVKAYFVEPVTDFRTRDRMLRPYRYAEVRPNNLDVELVLANAYICHPESQNDCATHYGSSSSSNSGIGTKGKQGSTFKASAGRAAVVHADLTLTQIWRGMPETGPGSSLLSVTALATSVFLAPLSEPCPPQPGEALSLVTPLLVSVHLETVTAAPSWRRSGPAERWAGMQGGERTRAGRKLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPATVSRSMSAVFTEATEARLRRWKRNGVADLHGG 2877
QALE L ARE+EL+SQED+E E +T ++ AE +L +AE L +TA G G G+ G + A M+VV QVNRVGDLKLSL+ER L RS L +VRREA E+T Q EK RFEAHRP R+PPAP RFDMVASGV IR+YRSA+++A+++SLRAW+V+ + LRPWCGGGD ++SGM+ VW+SLGFLP+RDPMF +E LD+TVLID LDA+LTR+QY+TI++I+MDNFPEPWS+CPPVIEWP DP+V+QGVCRDPL+GR TAQS+PVYARR+ L + EDE+A+FF P+EE LD RRDW K R R P A G +A S D GD VG++++ S AS LE+EIQA+A NLDGFSD T D D + + R +A G A GS+F+D S G P ++ PP R IA ID EFFL DKK+M GG+A+ACGAG+I+I DLS+ DG GG AA E + N G G HPGWGFGYNG DPRV FEP +WYDM+MATDYKRCS+F+SD RVVALA GL G+K++F+EPV +FR RDRMLRP+RY EVRPNN DVE+VL NAYIC PESQ DC H G A V HADLTLTQ WRGMP+TGPGSSLLS T LATSVFLAPLS+P PP GEALSLVTPLL S+ LETVTAAPSWRR+GPAERWAGMQGGERT+AGRKLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX AT+SRS+S E T++RLR+WK+ G +LHGG
Sbjct: 1676 QALERLVARESELMSQEDQESAAERKTRAELVTAEASLSVAEKHQQQLE-------------------ATADG---GTGDGGR----VSAVMDVVNQVNRVGDLKLSLDERVETLKRVRSRLESVRREANAERTVQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSEDEEAYFFAPNEE--PLDRNRRDWVSKRRAEEAAARRKLSAVPTAANGDGGEQNAFDDALPGDYYDDEKASFDLGDDVVGDEEAEVEDDSYASGXXXXXXXXXXXXXLEQEIQALAGNLDGFSD-ASTTSDTGDGDGDXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXSGRRTASWGAGSCETAGXXXXXXXXXXXX-------------GSEFLDPSPPLFGTPALEEGLLDPPLRPPPRQIAAIDLREFFLGFDKKWMAGGVALACGAGSISIRDLSES-----------------DG---GGVAAAAGEDLPGEDKDNNAKGDGGGGFSWHPGWGFGYNGPDPRVGFEPHVWYDMRMATDYKRCSVFLSDVRVVALARGLSGLKSFFLEPVQEFRERDRMLRPHRYVEVRPNNTDVEVVLVNAYICLPESQWDCYAHAGXX---------------XXXXXXXPAVVAHADLTLTQQWRGMPQTGPGSSLLSATVLATSVFLAPLSDPSPPPAGEALSLVTPLLASLRLETVTAAPSWRRAGPAERWAGMQGGERTKAGRKLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMHEXXXXXXXXXXXAATISRSVSVAIAEVTDSRLRKWKKTGRVELHGG 2554 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29.7899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29.7899.1 >prot_H-paniculata_contig29.7899.1 ID=prot_H-paniculata_contig29.7899.1|Name=mRNA_H-paniculata_contig29.7899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=966bp QALELLAARENELLSQEDKERRDEEETGGDVTKAEEALLIAENLHHTLSTback to top mRNA from alignment at H-paniculata_contig29:404..13122+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29.7899.1 ID=mRNA_H-paniculata_contig29.7899.1|Name=mRNA_H-paniculata_contig29.7899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12719bp|location=Sequence derived from alignment at H-paniculata_contig29:404..13122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29:404..13122+ >mRNA_H-paniculata_contig29.7899.1 ID=mRNA_H-paniculata_contig29.7899.1|Name=mRNA_H-paniculata_contig29.7899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5796bp|location=Sequence derived from alignment at H-paniculata_contig29:404..13122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |