mRNA_H-paniculata_contig11234.790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11234.790.1
Unique NamemRNA_H-paniculata_contig11234.790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A812XB43_SYMMI (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XB43_SYMMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.690e-13
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDA-VLCGTFSRDGEHLATGS 138
            ++VWD DTCRLRKDL YQA+DE MMH++  VLC  F+RDGE LATGS
Sbjct:  199 IEVWDSDTCRLRKDLDYQARDELMMHEEEPVLCAAFNRDGELLATGS 245
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A7S3Y2P2_HETAK (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P2_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 4.470e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATG 135
            ++VWD D CRLRKDL YQA+DEFMMH++AVL   FSRDGE  ATG
Sbjct:   63 VEVWDPDGCRLRKDLEYQARDEFMMHEEAVLSCCFSRDGELCATG 107
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: K3WH88_GLOUD (WD40 repeat-containing protein SMU1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH88_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDD--AVLCGTFSRDGEHLATGS 138
            ++VWD++ C+LRKDL YQAKDEFMMHDD   V    FSRDGE LATGS
Sbjct:  239 VEVWDYEKCKLRKDLEYQAKDEFMMHDDERGVTAQAFSRDGEMLATGS 286
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A813CGR5_9DINO (Smu1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGR5_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 8.130e-13
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138
            +++WD DT ++R DL YQAKD+FMMH+DA+LC  FS+DG+ LA+GS
Sbjct:   12 IEIWDPDTLKVRLDLDYQAKDKFMMHNDAILCLAFSKDGDMLASGS 57
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.580e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGT 102
            ++VWDFDTCRLRKDLAYQAKDEFMMHD AVLC +
Sbjct:  240 VEVWDFDTCRLRKDLAYQAKDEFMMHDKAVLCSS 273
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A7S2WM35_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM35_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.520e-12
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAK---DEFMMHDDAVLCGTFSRDGEHLATGS 138
            ++VWDF+TCRLR+DL YQA    + FMMHD AVL  TFSRDGE LA+GS
Sbjct:  261 VEVWDFETCRLRRDLPYQATPDDERFMMHDKAVLAITFSRDGEMLASGS 309
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A6G0XK62_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK62_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138
            ++ WDFD C L+KDL YQA++EFMMH+D V    FSRDGE LAT S
Sbjct:  234 VEAWDFDKCALKKDLDYQAREEFMMHEDGVSAQAFSRDGELLATAS 279
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A485LFI5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFI5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138
            ++ WDFD C L+KDL YQA+DEFMMH+++V    FSRDGE LAT S
Sbjct:  236 VEAWDFDKCVLKKDLDYQARDEFMMHEESVTAQAFSRDGELLATAS 281
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: UPI000C9D5DF3 (suppressor of mec-8 and unc-52 protein homolog 1-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D5DF3)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138
            ++VWD+ + +L+KDL YQA + FMMHDD VLC  FSRD E +A+GS
Sbjct:   28 IEVWDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGS 73
[Close]
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: UPI000B4F04E8 (WD40 repeat-containing protein SMU1 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F04E8)

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138
            ++VW+F T ++RKDL YQA+D FMM DDAVLC  FSRD E LATG+
Sbjct:  238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGA 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XB43_SYMMI1.690e-1370.21WD40 repeat-containing protein SMU1 (Fragment) n=1... [more]
A0A7S3Y2P2_HETAK4.470e-1371.11WD40 repeat-containing protein SMU1 (Fragment) n=1... [more]
K3WH88_GLOUD5.400e-1368.75WD40 repeat-containing protein SMU1 n=1 Tax=Globis... [more]
A0A813CGR5_9DINO8.130e-1360.87Smu1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
D7FX60_ECTSI2.580e-1285.29WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A7S2WM35_9STRA3.520e-1267.35WD40 repeat-containing protein SMU1 n=1 Tax=Rhizoc... [more]
A0A6G0XK62_9STRA1.230e-1163.04WD40 repeat-containing protein SMU1 n=1 Tax=Aphano... [more]
A0A485LFI5_9STRA1.230e-1163.04WD40 repeat-containing protein SMU1 n=1 Tax=Aphano... [more]
UPI000C9D5DF31.420e-1158.70suppressor of mec-8 and unc-52 protein homolog 1-l... [more]
UPI000B4F04E82.600e-1165.22WD40 repeat-containing protein SMU1 n=1 Tax=Merion... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11234contigH-paniculata_contig11234:7650..7787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue8.1e-11
Seed eggNOG ortholog65071.PYU1_T004330
Preferred nameSMU1
KEGG koko:K13111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
EggNOG free text desc.WD40 repeat-containing protein SMU1. Source PGD
EggNOG OGs1MDVH@121069,KOG0275@1,KOG0275@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.4235175-CDS-H-paniculata_contig11234:7649..77871622928827.4235175-CDS-H-paniculata_contig11234:7649..7787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11234 7650..7787 +
1691480636.2804725-CDS-H-paniculata_contig11234:7649..77871691480636.2804725-CDS-H-paniculata_contig11234:7649..7787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11234 7650..7787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11234.790.1prot_H-paniculata_contig11234.790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11234 7650..7787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11234.790.1

>prot_H-paniculata_contig11234.790.1 ID=prot_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS
back to top

mRNA from alignment at H-paniculata_contig11234:7650..7787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11234.790.1 ID=mRNA_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig11234:7650..7787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGGTGTGGGACTTCGACACATGCCGACTGCGCAAGGACCTGGCCTA
CCAGGCAAAGGACGAGTTCATGATGCACGACGATGCGGTTCTGTGTGGCA
CCTTCAGCAGGGATGGCGAACACTTGGCTACCGGCAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11234:7650..7787+

>mRNA_H-paniculata_contig11234.790.1 ID=mRNA_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig11234:7650..7787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGGTGTGGGACTTCGACACATGCCGACTGCGCAAGGACCTGGCCTA
CCAGGCAAAGGACGAGTTCATGATGCACGACGATGCGGTTCTGTGTGGCA
CCTTCAGCAGGGATGGCGAACACTTGGCTACCGGCAGCCTTCAGGTGTGG
GACTTCGACACATGCCGACTGCGCAAGGACCTGGCCTACCAGGCAAAGGA
CGAGTTCATGATGCACGACGATGCGGTTCTGTGTGGCACCTTCAGCAGGG
ATGGCGAACACTTGGCTACCGGCAGC
back to top