mRNA_H-paniculata_contig28957.7892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28957.7892.1
Unique NamemRNA_H-paniculata_contig28957.7892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.660e-23
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   49 GGDVDDCS-TGGPPQKRIRNAKYAIPTMEEACLLRETEGKLFQGNLLQLEVEELLGEVRLDYSKKS 243
            GGD D     G PPQKR R+AKYAIPTMEEA LLRETEGKLF+GNLL+LEVEELLGEVRLD+ KKS
Sbjct:   60 GGDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDHGKKS 125
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.260e-22
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   49 GGDVDDCSTGGPPQKRIRNAKYAIPTMEEACLLRETEGKLFQGNLLQLEVEELLGEVRLDYSKKS 243
            GG+ D    G PPQKR R+AKYAIPTMEEA LLRETEGKLF+GNLL+LEVEELLGEVRLD+ KKS
Sbjct:   70 GGEGD----GAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDHGKKS 130
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: A0A4P9W203_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W203_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 2.970e-6
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   82 PPQKRIRNAKYAIPTMEEACLLRETEGKLFQGNLLQLEVEELLGEVRLDYSKKS 243
            P  K+  NA Y  PT +E  +L+ET   LF+ NL +++++ELLGEVR+DY+K S
Sbjct:  487 PRAKKDGNALYRAPTSDEIHMLKETTD-LFKSNLFKMQIDELLGEVRIDYTKMS 539
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: A0A836CBT1_9STRA (Nrap protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.210e-6
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   40 TNTGGDVDDCSTGGPPQKRIR----NAKYAIPTMEEACLLRETEG---KLFQGNLLQLEVEELLGEVRLDYSKKS 243
            T  GG+ +      PP KR++      KYA+PT EEA  L   +     L  GNLL+LEV ELL EVR++Y KKS
Sbjct:   17 TTEGGEHE------PPAKRLKATGVKRKYALPTPEEAAQLLGLDSGSSSLLAGNLLRLEVNELLEEVRVNYDKKS 85
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: A0A0L0HNC0_SPIPD (U3 small nucleolar RNA-associated protein 22 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNC0_SPIPD)

HSP 1 Score: 49.3 bits (116), Expect = 7.010e-5
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   58 VDDCSTG-GPPQKRIRNAKYAIPTMEEACLLRETEGKLFQGNLLQLEVEELLGEVRLDYSK 237
             DD   G G   ++I N  Y  PT EE   L+ET   LF+ NL +L+++ELL EVR+DYSK
Sbjct:   76 ADDKEVGHGQRLEKIGNKFYKAPTNEEIQQLKETTD-LFKSNLFKLQIDELLKEVRIDYSK 135
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BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Match: A0A066V6E3_TILAU (Nrap protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066V6E3_TILAU)

HSP 1 Score: 49.3 bits (116), Expect = 7.030e-5
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   31 EKDTNTGGDVDDCSTGGPPQ-----KRIRNAKYAIPTMEEACLLRETEGKLFQGNLLQLEVEELLGEVRLDYSK 237
            E+  + G + DD   G         KRI ++ YAIPT EE   LRET  +LF+ N+++L++EELL EVR  Y +
Sbjct:  100 EQGDSIGANADDAEAGATTNATGKSKRI-SSLYAIPTNEEMQGLRETS-ELFKNNVIKLQIEELLQEVRPSYER 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28957.7892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FGX0_ECTSI2.660e-2378.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE1.260e-2278.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4P9W203_9FUNG2.970e-648.15Uncharacterized protein (Fragment) n=1 Tax=Blyttio... [more]
A0A836CBT1_9STRA4.210e-645.33Nrap protein-domain-containing protein n=1 Tax=Tri... [more]
A0A0L0HNC0_SPIPD7.010e-547.54U3 small nucleolar RNA-associated protein 22 n=2 T... [more]
A0A066V6E3_TILAU7.030e-541.89Nrap protein n=1 Tax=Tilletiaria anomala (strain A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28957contigH-paniculata_contig28957:1306..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue7.5e-20
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.0802455-CDS-H-paniculata_contig28957:1305..15481622929882.0802455-CDS-H-paniculata_contig28957:1305..1548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28957 1306..1548 +
1691481053.1557627-CDS-H-paniculata_contig28957:1305..15481691481053.1557627-CDS-H-paniculata_contig28957:1305..1548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28957 1306..1548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28957.7892.1prot_H-paniculata_contig28957.7892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28957 1306..1548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28957.7892.1

>prot_H-paniculata_contig28957.7892.1 ID=prot_H-paniculata_contig28957.7892.1|Name=mRNA_H-paniculata_contig28957.7892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MQCLAFLCRHEKDTNTGGDVDDCSTGGPPQKRIRNAKYAIPTMEEACLLR
ETEGKLFQGNLLQLEVEELLGEVRLDYSKKS
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mRNA from alignment at H-paniculata_contig28957:1306..1548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28957.7892.1 ID=mRNA_H-paniculata_contig28957.7892.1|Name=mRNA_H-paniculata_contig28957.7892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig28957:1306..1548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATGCCTTGCTTTTCTCTGCCGGCATGAAAAAGACACAAACACAGG
AGGTGATGTCGATGATTGCAGCACAGGAGGACCGCCTCAAAAGAGGATAC
GCAACGCAAAATACGCCATCCCTACCATGGAGGAGGCGTGTTTACTCCGG
GAGACCGAAGGCAAGCTTTTCCAGGGCAACCTGCTCCAGCTAGAGGTGGA
AGAACTGTTGGGGGAGGTACGGTTAGACTACAGCAAGAAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig28957:1306..1548+

>mRNA_H-paniculata_contig28957.7892.1 ID=mRNA_H-paniculata_contig28957.7892.1|Name=mRNA_H-paniculata_contig28957.7892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig28957:1306..1548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATGCCTTGCTTTTCTCTGCCGGCATGAAAAAGACACAAACACAGG
AGGTGATGTCGATGATTGCAGCACAGGAGGACCGCCTCAAAAGAGGATAC
GCAACGCAAAATACGCCATCCCTACCATGGAGGAGGCGTGTTTACTCCGG
GAGACCGAAGGCAAGCTTTTCCAGGGCAACCTGCTCCAGCTAGAGGTGGA
AGAACTGTTGGGGGAGGTACGGTTAGACTACAGCAAGAAGAGCATGCAAT
GCCTTGCTTTTCTCTGCCGGCATGAAAAAGACACAAACACAGGAGGTGAT
GTCGATGATTGCAGCACAGGAGGACCGCCTCAAAAGAGGATACGCAACGC
AAAATACGCCATCCCTACCATGGAGGAGGCGTGTTTACTCCGGGAGACCG
AAGGCAAGCTTTTCCAGGGCAACCTGCTCCAGCTAGAGGTGGAAGAACTG
TTGGGGGAGGTACGGTTAGACTACAGCAAGAAGAGC
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