mRNA_H-paniculata_contig28937.7889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28937.7889.1
Unique NamemRNA_H-paniculata_contig28937.7889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.810e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKV 135
            QNTDQRTTDFKYLTSKDQELSREI++KIRKIERLQSSLQHWRTKV
Sbjct:  382 QNTDQRTTDFKYLTSKDQELSREIEVKIRKIERLQSSLQHWRTKV 426
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BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.080e-18
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRTTDFKYLTSKDQELSREI++KIRKIERLQSSLQHWRTK++
Sbjct:  378 QNTDQRTTDFKYLTSKDQELSREIEVKIRKIERLQSSLQHWRTKIA 423
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BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.170e-16
Identity = 37/46 (80.43%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRTTDFKYLT+KDQELSREI++K+RKIERLQ++L HWRTK++
Sbjct:  306 QNTDQRTTDFKYLTAKDQELSREIELKVRKIERLQNALAHWRTKIA 351
[Close]
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A2D4CDE8_PYTIN (NYD-SP28_assoc domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDE8_PYTIN)

HSP 1 Score: 76.3 bits (186), Expect = 3.780e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQELSR+I++KIRKIERLQ+S+ HWRTK++
Sbjct:   70 QNTDQRTQDFKYLTAKDQELSRDIELKIRKIERLQASIAHWRTKIA 115
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BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A024TIJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIJ1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.000e-15
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQELS+EI+IKIRKIERLQ++L HWRTK++
Sbjct:  264 QNTDQRTQDFKYLTAKDQELSKEIEIKIRKIERLQANLTHWRTKIA 309
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BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A1V9ZVH8_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVH8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.000e-15
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQELS++I+IKIRKIERLQS+L HWRTK++
Sbjct: 1041 QNTDQRTQDFKYLTAKDQELSKDIEIKIRKIERLQSNLTHWRTKIA 1086
[Close]
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A8K1CL71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL71_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQELSR+I++KIRKIERLQ+S+ HWRTK++
Sbjct:  274 QNTDQRTQDFKYLTAKDQELSRDIELKIRKIERLQASIAHWRTKIA 319
[Close]
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: K3X0D8_GLOUD (NYD-SP28 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0D8_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQ+LSR+I++KIRKIERLQSS+ HWRTK++
Sbjct:  274 QNTDQRTQDFKYLTAKDQDLSRDIELKIRKIERLQSSIAHWRTKIT 319
[Close]
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A2D4C0F6_PYTIN (DUSP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0F6_PYTIN)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFKYLT+KDQELSR+I++KIRKIERLQ+S+ HWRTK++
Sbjct:  639 QNTDQRTQDFKYLTAKDQELSRDIELKIRKIERLQASIAHWRTKIA 684
[Close]
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Match: A0A7S2RYX4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RYX4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-14
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVS 138
            QNTDQRT DFK+LT KDQELS+EI++KIRKIERLQ+SL HWRTK++
Sbjct:  245 QNTDQRTQDFKFLTRKDQELSKEIEVKIRKIERLQTSLSHWRTKIA 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28937.7889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6H2_9PHAE2.810e-1895.56Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FVY5_ECTSI3.080e-1891.30Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835ZEY8_9STRA6.170e-1680.43Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A2D4CDE8_PYTIN3.780e-1578.26NYD-SP28_assoc domain-containing protein n=1 Tax=P... [more]
A0A024TIJ1_9STRA4.000e-1580.43Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZVH8_9STRA4.000e-1580.43PPM-type phosphatase domain-containing protein n=1... [more]
A0A8K1CL71_PYTOL5.470e-1578.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X0D8_GLOUD5.470e-1578.26NYD-SP28 domain-containing protein n=1 Tax=Globisp... [more]
A0A2D4C0F6_PYTIN5.470e-1578.26DUSP domain-containing protein n=1 Tax=Pythium ins... [more]
A0A7S2RYX4_9STRA1.020e-1478.26Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28937contigH-paniculata_contig28937:1528..1671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.9084387-CDS-H-paniculata_contig28937:1527..16711622929881.9084387-CDS-H-paniculata_contig28937:1527..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28937 1528..1671 -
1691481053.114026-CDS-H-paniculata_contig28937:1527..16711691481053.114026-CDS-H-paniculata_contig28937:1527..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28937 1528..1671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28937.7889.1prot_H-paniculata_contig28937.7889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28937 1528..1671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28937.7889.1

>prot_H-paniculata_contig28937.7889.1 ID=prot_H-paniculata_contig28937.7889.1|Name=mRNA_H-paniculata_contig28937.7889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
QNTDQRTTDFKYLTSKDQELSREIDIKIRKIERLQSSLQHWRTKVSP*
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mRNA from alignment at H-paniculata_contig28937:1528..1671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28937.7889.1 ID=mRNA_H-paniculata_contig28937.7889.1|Name=mRNA_H-paniculata_contig28937.7889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig28937:1528..1671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACACAGACCAACGCACGACCGACTTCAAGTACTTGACCTCCAAAGA
CCAAGAGCTCAGCAGAGAGATAGATATCAAGATCCGGAAAATAGAACGCC
TGCAGAGTAGCCTGCAACACTGGCGCACGAAGGTATCGCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28937:1528..1671-

>mRNA_H-paniculata_contig28937.7889.1 ID=mRNA_H-paniculata_contig28937.7889.1|Name=mRNA_H-paniculata_contig28937.7889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig28937:1528..1671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACACAGACCAACGCACGACCGACTTCAAGTACTTGACCTCCAAAGA
CCAAGAGCTCAGCAGAGAGATAGATATCAAGATCCGGAAAATAGAACGCC
TGCAGAGTAGCCTGCAACACTGGCGCACGAAGGTATCGCCGTGACAGAAC
ACAGACCAACGCACGACCGACTTCAAGTACTTGACCTCCAAAGACCAAGA
GCTCAGCAGAGAGATAGATATCAAGATCCGGAAAATAGAACGCCTGCAGA
GTAGCCTGCAACACTGGCGCACGAAGGTATCGCCGTGA
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