mRNA_H-paniculata_contig289.7882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig289.7882.1
Unique NamemRNA_H-paniculata_contig289.7882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.190e-31
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:  308 VPGDEHMDGIAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            +PGDE  DGIAAAACSMQGWR +MEDRLC++MD+EGCPLGVRHIFCLFDGHGGDSVAE+C  +L D IV
Sbjct:   42 IPGDECSDGIAAAACSMQGWRCSMEDRLCARMDLEGCPLGVRHIFCLFDGHGGDSVAEYCRTYLADRIV 110
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A5N5M5U9_PANHP (PPM-type phosphatase domain-containing protein n=6 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5M5U9_PANHP)

HSP 1 Score: 59.7 bits (143), Expect = 2.510e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 2 
Query:  332 GIAAAACSMQGWRRTMED-RLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            GI+ A  +MQGWR  MED   C     EG P      F +FDGH G++VA++C+ HL+DHI+
Sbjct:   77 GISYALATMQGWRAQMEDAHTCMPEMTEGLPDWS--YFAVFDGHAGNTVAQYCSTHLLDHIL 136
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: W6L118_9TRYP (PPM-type phosphatase domain-containing protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L118_9TRYP)

HSP 1 Score: 59.3 bits (142), Expect = 2.550e-7
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 2 
Query:  335 IAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            +    CSMQGWR+TMED   +++++ G     R  F +FDGH  D  A +C  H++D ++
Sbjct:   22 LRIGCCSMQGWRKTMEDAHVAQLNLNG--KKTRAFFAVFDGHQSDEAAHYCRAHMLDEVI 79
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: S9V5V2_9TRYP (Protein phosphatase 2C, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=S9V5V2_9TRYP)

HSP 1 Score: 58.9 bits (141), Expect = 3.530e-7
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:  335 IAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            +    CSMQGWR++MED   ++++I GC    R  F +FDGH  +  A FC  H++D ++
Sbjct:   22 LRVGCCSMQGWRKSMEDAHVAQLNIGGCKK--RAFFGVFDGHQSNEAARFCRAHMLDEVM 79
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A8C5RYJ8_LATLA (PPM-type phosphatase domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5RYJ8_LATLA)

HSP 1 Score: 56.2 bits (134), Expect = 6.490e-7
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 2 
Query:  329 DGIAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRH--IFCLFDGHGGDSVAEFCNNHLIDHIVD 517
            +G+     SMQGWR  MED   +   + G P G+     F ++DGH G  VA +C+NHL++HI +
Sbjct:   20 NGLRYGLSSMQGWRVEMED---AHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSNHLLEHITN 81
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A556U7F3_BAGYA (Protein phosphatase 1B n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U7F3_BAGYA)

HSP 1 Score: 58.5 bits (140), Expect = 7.290e-7
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:  332 GIAAAACSMQGWRRTMED-RLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIVD 517
            G++ A  SMQGWR  MED   C     EG P      F +FDGH G++VA++C+ HL+ +I+D
Sbjct:   78 GVSYALASMQGWRAQMEDAHTCMPEMTEGLPDWS--YFAVFDGHAGNTVAQYCSTHLLKYIID 138
[Close]
BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: W6KFQ9_9TRYP (PPM-type phosphatase domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KFQ9_9TRYP)

HSP 1 Score: 57.8 bits (138), Expect = 8.880e-7
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 2 
Query:  335 IAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            +    CSMQGWR+TMED   +++ + G     R  F +FDGH  D  A +C  H++D ++
Sbjct:   22 LRVGCCSMQGWRKTMEDAHVAQLSLNG--KKTRAFFGVFDGHQSDEAAHYCRAHMLDELI 79
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A7S3NBA9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3NBA9_9SPIT)

HSP 1 Score: 55.8 bits (133), Expect = 9.550e-7
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 2 
Query:  296 HRNRVPGDEHMDGIAAAACSMQGWRRTMEDRLCSKMDIEGCPLGV-RHIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            ++ +V  D   D +   +  MQGWR +MED  C    +E    G  R++F +FDGHGG+ VAEF  ++ +  +V
Sbjct:   12 NKTKVNHDGETDRLIYGSTEMQGWRNSMEDA-CITEQLEASASGKDRYLFSVFDGHGGNQVAEFARDNFVKELV 84
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A8C3YWP8_9TELE (Protein phosphatase 1A-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3YWP8_9TELE)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-6
Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 2 
Query:  239 YGNESTTDSTAGMMGSLGKHRNRVPGDEHM-----DGIAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVR--HIFCLFDGHGGDSVAEFCNNHLIDHIV 514
            Y   S T   +   G +G   N+   ++H      +G+     SMQGWR  MED   +   + G P G+     F ++DGH G  VA++C  HL++HI 
Sbjct:   25 YPGSSETRGESRPDGDMGAFLNKPKVEKHTARGEGNGLRFGVSSMQGWRAEMED---AHSAVVGLPRGLAAWSFFAVYDGHAGTQVAQYCCQHLLEHIT 120
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BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Match: A0A197JDI8_9FUNG (PP2C-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDI8_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 2.650e-6
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  329 DGIAAAACSMQGWRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHI 511
            D +A    +MQGWR TM+D   + +++E  P      F ++DGHGG++VA++C +HL  HI
Sbjct:   20 DRLAFGQSAMQGWRVTMDDAHTTLLEVEEAPGTA--FFAVYDGHGGNTVAKYCGDHLHKHI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig289.7882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI4.190e-3179.71Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A5N5M5U9_PANHP2.510e-746.77PPM-type phosphatase domain-containing protein n=6... [more]
W6L118_9TRYP2.550e-738.33PPM-type phosphatase domain-containing protein n=1... [more]
S9V5V2_9TRYP3.530e-740.00Protein phosphatase 2C, putative n=1 Tax=Angomonas... [more]
A0A8C5RYJ8_LATLA6.490e-740.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A556U7F3_BAGYA7.290e-744.44Protein phosphatase 1B n=1 Tax=Bagarius yarrelli T... [more]
W6KFQ9_9TRYP8.880e-738.33PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3NBA9_9SPIT9.550e-736.49Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A8C3YWP8_9TELE2.100e-632.32Protein phosphatase 1A-like n=1 Tax=Denticeps clup... [more]
A0A197JDI8_9FUNG2.650e-640.98PP2C-domain-containing protein n=1 Tax=Linnemannia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig289contigH-paniculata_contig289:26331..28522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D8LHX2
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K19705
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Exons4
Model size521
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig289.7882.1prot_H-paniculata_contig289.7882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig289 26331..28458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.6726096-CDS-H-paniculata_contig289:26330..264381622929880.6726096-CDS-H-paniculata_contig289:26330..26438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26331..26438 -
1691481052.5522897-CDS-H-paniculata_contig289:26330..264381691481052.5522897-CDS-H-paniculata_contig289:26330..26438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26331..26438 -
1622929880.6989071-CDS-H-paniculata_contig289:26879..269221622929880.6989071-CDS-H-paniculata_contig289:26879..26922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26880..26922 -
1691481052.5663183-CDS-H-paniculata_contig289:26879..269221691481052.5663183-CDS-H-paniculata_contig289:26879..26922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26880..26922 -
1622929880.716392-CDS-H-paniculata_contig289:27759..279771622929880.716392-CDS-H-paniculata_contig289:27759..27977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 27760..27977 -
1691481052.575789-CDS-H-paniculata_contig289:27759..279771691481052.575789-CDS-H-paniculata_contig289:27759..27977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 27760..27977 -
1622929880.7313101-CDS-H-paniculata_contig289:28371..284581622929880.7313101-CDS-H-paniculata_contig289:28371..28458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 28372..28458 -
1691481052.5860224-CDS-H-paniculata_contig289:28371..284581691481052.5860224-CDS-H-paniculata_contig289:28371..28458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 28372..28458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.743797-UTR-H-paniculata_contig289:28458..285221622929880.743797-UTR-H-paniculata_contig289:28458..28522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig289 28459..28522 -
1691481052.5966377-UTR-H-paniculata_contig289:28458..285221691481052.5966377-UTR-H-paniculata_contig289:28458..28522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig289 28459..28522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig289.7882.1

>prot_H-paniculata_contig289.7882.1 ID=prot_H-paniculata_contig289.7882.1|Name=mRNA_H-paniculata_contig289.7882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MGNILDAPVKDKYVVRFERRADRDCQRKQLANDRGSRTVHDDCVLAREEK
RREEELEVYGNESTTDSTAGMMGSLGKHRNRVPGDEHMDGIAAAACSMQG
WRRTMEDRLCSKMDIEGCPLGVRHIFCLFDGHGGDSVAEFCNNHLIDHIV
DL
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mRNA from alignment at H-paniculata_contig289:26331..28522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig289.7882.1 ID=mRNA_H-paniculata_contig289.7882.1|Name=mRNA_H-paniculata_contig289.7882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2192bp|location=Sequence derived from alignment at H-paniculata_contig289:26331..28522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAGGTGAACTACAAAATATTACTGTGGTTTACGATTGCTGCAGCTTG
GAAGGGAGGAGCCCATGGGGAACATTCTTGATGCGCCAGTGAAAGATAAA
TATGTTGTTCGTTTCGAGCGCCGTGCAGATCGTGACTGTCAACGAAAACA
GGTAGGTATAACAAGTGACTCATCGAAGGCTCGACTATAGATAGAGAATC
GGCTAACCGCGGAACATTTTCTGGGTAAACTATAGCACAGTCGTCGAGTT
TCACTGCCTCAACATATTCTACTGGGCATAAGTGCTACCTGCTCGGATGA
GGTGGCCTTCACTTCGCCCACACAGATAGAAATGCGATTTTCGGAATAGT
TTCACCTACTACTACTCGATTTACCTCACATGTAAGCTTATCATCATGTT
ACGCAGCCGTTGTGCGCGTCGATCATGGGCGAACACGGCTACGATCAGAC
ACACACAAGCGCCGTGGTGGCTACTTACCCCTTAAAACGAGTACATCCGC
TTCTCAGCCTTATCTGAACCTCGAACATACTGTATTTGCGTGCAGCTAGC
GAACGATCGTGGGAGTAGAACCGTCCACGATGACTGCGTTTTGGCTCGAG
AGGAAAAGAGGAGGGAGGAAGAGCTAGAGGTATATGGGAATGAGAGCACC
ACTGATTCTACGGCTGGAATGATGGGGAGTTTGGGAAAACATAGGAATAG
AGTACCTGGAGATGAGCATATGGATGGAATCGCTGCAGCTGCGTGTTCCA
TGCAGGGATGGAGGTGAGGTCTCTCTCTTGCAACATGGGCGACAACGCTA
GAAATATGGGGGACGAAGGTTTATGTGGCATGAGTCAAACATCCAGTTTC
ATAGCTCTAGTCTTTTATCGTAGCTCCATGAGTGACTCCTCTCTCTACCT
GTTTCATGGACAGCTATGGCGGAATAATCTGACGGATACCGGTTTCCGTA
CGCAATCGAGGCATGGTACCTAGCCTAGCATGAATGTATAGGGCTATGCT
CCTGATCGAAATCAATGGGCTTCATTACTACTGTATGTGTGACCGTTGGG
TATCTGCTGTTCTACATCAGTGTTGCATAGCCGACGACTACATAAACCCG
TCACAGTAAGTCGAAAACGAGGTGGCTTATGTCTTTTTCCGTAGTCAATA
TTTATGCCGATAGTTCCGGTATAACCCATGTCCGGCCATTTCCAAGTTCG
GCATGTTCCAGACGAGGCCGTCTTTGTCCGATTTGTACGGTTTTCCGTTT
CTGAAGATTGGAAATCGTGATAGCGAGCTGAACAACTTGACGACTGTGAA
AAAAGTGCACCAGATGTACAAGGGCAACATGCCGTAGGCCATTTCCGCGC
CTTTCCCTCAATTTTGAGGTCGTGATTCCAATGTTTTCGGAAATGGAAAA
ATCGGAAAAATCGAAAAAAGAATGGCCTAGACTAGAACGACCCTTACCAA
GAAATACATGTACCAGAGGGTAGCTTTATGTCAGAATAGTGGACATGCCC
CAGAACGCCAGATGACAAGACAGCTTATCTACACTGCAATGAAGCTATAT
ATAGTGGAAAATATTCTCGTTGTCCCGCTACTCTTTCGCTGACACTTTAG
GCGCACAATGGAGGATCGATTGTGCTCTAAAATGGACATCGAGGTGAGGC
TCGACGAAGAGTATGAAGAACTATTAAACGGATGATCTGACAGGAGCTGG
GGGAAGAGGGGACTCACGTAGGCCACCTAGAGAGTAAGTTGGATCTGGCT
ATTCAAGGATGCTCTTCCATAGTACCATTGAACAGTGTTCTTCCAGAGGA
GCAGGATAATTGTTTGATACGCCCACGCAAGTGACTAGGGGGGAGGGCGT
CGTATCACCCCCTTCTTCGACAGGGTTGTCTATGGCTACATTTACTGCCC
ACCAAATGGATCAGCGGTGCGGGTTCAGCATTAAGGCTGCTAACTACACC
AAGGACCCCCGCGGTGCTGTTATAGTGCAAGCGTTCATCCTATAGAACAT
GCACACGTAACGCCAAACAACACGATTTGTAGCGTGTAGTTTGTCTAAGT
TTCCTGCAGGCCCATTTATCGCTGTTCAAACCAGGGCTGCCCATTGGGAG
TGAGACACATCTTCTGCCTGTTCGATGGCCACGGGGGTGATTCAGTCGCC
GAGTTCTGCAACAACCACCTCATCGACCACATCGTCGACCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig289:26331..28522-

>mRNA_H-paniculata_contig289.7882.1 ID=mRNA_H-paniculata_contig289.7882.1|Name=mRNA_H-paniculata_contig289.7882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig289:26331..28522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAACATTCTTGATGCGCCAGTGAAAGATAAATATGTTGTTCGTTT
CGAGCGCCGTGCAGATCGTGACTGTCAACGAAAACAGATGGGGAACATTC
TTGATGCGCCAGTGAAAGATAAATATGTTGTTCGTTTCGAGCGCCGTGCA
GATCGTGACTGTCAACGAAAACAGCTAGCGAACGATCGTGGGAGTAGAAC
CGTCCACGATGACTGCGTTTTGGCTCGAGAGGAAAAGAGGAGGGAGGAAG
AGCTAGAGGTATATGGGAATGAGAGCACCACTGATTCTACGGCTGGAATG
ATGGGGAGTTTGGGAAAACATAGGAATAGAGTACCTGGAGATGAGCATAT
GGATGGAATCGCTGCAGCTGCGTGTTCCATGCAGGGATGGAGCTAGCGAA
CGATCGTGGGAGTAGAACCGTCCACGATGACTGCGTTTTGGCTCGAGAGG
AAAAGAGGAGGGAGGAAGAGCTAGAGGTATATGGGAATGAGAGCACCACT
GATTCTACGGCTGGAATGATGGGGAGTTTGGGAAAACATAGGAATAGAGT
ACCTGGAGATGAGCATATGGATGGAATCGCTGCAGCTGCGTGTTCCATGC
AGGGATGGAGGCGCACAATGGAGGATCGATTGTGCTCTAAAATGGACATC
GAGGCGCACAATGGAGGATCGATTGTGCTCTAAAATGGACATCGAGGGCT
GCCCATTGGGAGTGAGACACATCTTCTGCCTGTTCGATGGCCACGGGGGT
GATTCAGTCGCCGAGTTCTGCAACAACCACCTCATCGACCACATCGTCGA
CCTCGGCTGCCCATTGGGAGTGAGACACATCTTCTGCCTGTTCGATGGCC
ACGGGGGTGATTCAGTCGCCGAGTTCTGCAACAACCACCTCATCGACCAC
ATCGTCGACCTC
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