mRNA_H-paniculata_contig289.7881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig289.7881.1
Unique NamemRNA_H-paniculata_contig289.7881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.730e-24
Identity = 82/201 (40.80%), Postives = 107/201 (53.23%), Query Frame = 1 
Query:    1 VKEACRIVDTQVKGKYFTPTGRFVPPRVYDVLDVTPPQ-----ALSNAHFAD-YDGPLPSMLEYRNGSGDLGDCQHLDSGWWFGERPGQDGEKNTEKQEEKQILPNGAGGLKDAIQQGGEAKRDINTTGNECGDQLSSMEDDDGQQGFSTCGTT-SLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            V++ACR VD +VKG +FTP GR+V PRV D LD +P Q     + S+  F +  D   P  +E R     L   +   S     + P +DG+    K+   +     AGG  D              +GN   D       D G   FSTCGTT SL+V+++D  +ICCN+GDSRAVLASEG SR LS DHKPD+ +ER R
Sbjct:  186 VRDACREVDAEVKGTFFTPAGRYVAPRVDDPLDPSPKQQPTRTSSSSGGFGEGADQARPMSMEERR----LEKAKRKPS-TQANKSPARDGDAGARKENGGETNAGFAGGWGDG-------------SGNATDDA------DGGPTRFSTCGTTTSLIVVVSDAFIICCNTGDSRAVLASEGASRQLSVDHKPDNRAERQR 362
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A2P2MHS4_RHIMU (PPM-type phosphatase domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MHS4_RHIMU)

HSP 1 Score: 59.3 bits (142), Expect = 3.450e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  424 FSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            FS  GTT++V ++T +H++  N GDSRAVL   G + PLS DHKPD P E AR
Sbjct:   32 FSFGGTTAVVALLTPEHIVVANCGDSRAVLCRGGKAVPLSVDHKPDRPDEHAR 84
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A087GA83_ARAAL (Protein-serine/threonine phosphatase n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GA83_ARAAL)

HSP 1 Score: 61.6 bits (148), Expect = 8.570e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  436 GTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            G+T++  ++T +H+I  N+GDSRAVL   GV+ PLS DHKPD P ERAR
Sbjct:  217 GSTAVTAVLTQEHIIVANTGDSRAVLCRSGVAIPLSNDHKPDRPDERAR 265
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A565CQF7_9BRAS (Protein-serine/threonine phosphatase n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CQF7_9BRAS)

HSP 1 Score: 61.6 bits (148), Expect = 8.570e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  436 GTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            G+T++  ++T +H+I  N+GDSRAVL   GV+ PLS DHKPD P ERAR
Sbjct:  217 GSTAVAAVLTQEHIIVANTGDSRAVLCRSGVAVPLSNDHKPDRPDERAR 265
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: V4LHZ5_EUTSA (Protein-serine/threonine phosphatase n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LHZ5_EUTSA)

HSP 1 Score: 61.2 bits (147), Expect = 1.180e-7
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  409 DGQQGFSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            D ++  +  G+T++  ++T  H++  N+GDSRAVL   GV+ PLS DHKPD P ERAR
Sbjct:  223 DPRETAAMSGSTAVTAVLTQDHIVVANTGDSRAVLCRNGVAIPLSNDHKPDRPDERAR 280
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: D7MRI6_ARALL (Protein-serine/threonine phosphatase n=2 Tax=Arabidopsis TaxID=3701 RepID=D7MRI6_ARALL)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-7
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  436 GTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            G+T++V ++T  H++  N+GDSRAVL   G++ PLS DHKPD P ERAR
Sbjct:  230 GSTAVVAVLTQDHIVVANTGDSRAVLCRSGLAIPLSNDHKPDRPDERAR 278
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A6D2I6N7_9BRAS (Protein-serine/threonine phosphatase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I6N7_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 1.610e-7
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  376 CGDQLSSMEDDDGQQGFSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            CG  +S  + D  +   S  G+T++  ++T +H++  N+GDSRAVL   G++ PLS DHKPD P ERAR
Sbjct:  216 CGTAVSLCKCDPREAAIS--GSTAVTAVLTQEHIVVANTGDSRAVLCRSGMAIPLSDDHKPDRPDERAR 282
[Close]
BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A2P2MHS3_RHIMU (PPM-type phosphatase domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MHS3_RHIMU)

HSP 1 Score: 59.3 bits (142), Expect = 2.300e-7
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  424 FSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            FS  GTT++V ++T +H++  N GDSRAVL   G + PLS DHKPD P E AR
Sbjct:   32 FSFGGTTAVVALLTPEHIVVANCGDSRAVLCRGGKAVPLSVDHKPDRPDEHAR 84
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BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: UPI0010A3190C (protein phosphatase 2C 51-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3190C)

HSP 1 Score: 59.7 bits (143), Expect = 2.860e-7
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  412 GQQGFSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            G+ G  T G+T++VV+++  H++  N GDSRAVL   GV+ PLSKDHKP+ P ER R
Sbjct:  122 GEDG--TVGSTAVVVVVSSDHLLVANCGDSRAVLCRGGVAFPLSKDHKPNRPDERER 176
[Close]
BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Match: A0A7S3MQ44_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MQ44_9SPIT)

HSP 1 Score: 56.6 bits (135), Expect = 3.560e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  415 QQGFSTCGTTSLVVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR 582
            + G    G+TS++ +I  +H+IC N+GDSRAVL+  G +  LS DHKP +P E+AR
Sbjct:   55 ESGHDQSGSTSVMTLIGPKHIICANTGDSRAVLSRAGEAVALSHDHKPYNPEEKAR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig289.7881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI1.730e-2440.80Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A2P2MHS4_RHIMU3.450e-854.72PPM-type phosphatase domain-containing protein n=1... [more]
A0A087GA83_ARAAL8.570e-857.14Protein-serine/threonine phosphatase n=1 Tax=Arabi... [more]
A0A565CQF7_9BRAS8.570e-857.14Protein-serine/threonine phosphatase n=1 Tax=Arabi... [more]
V4LHZ5_EUTSA1.180e-748.28Protein-serine/threonine phosphatase n=1 Tax=Eutre... [more]
D7MRI6_ARALL1.590e-755.10Protein-serine/threonine phosphatase n=2 Tax=Arabi... [more]
A0A6D2I6N7_9BRAS1.610e-744.93Protein-serine/threonine phosphatase n=1 Tax=Micro... [more]
A0A2P2MHS3_RHIMU2.300e-754.72PPM-type phosphatase domain-containing protein n=1... [more]
UPI0010A3190C2.860e-752.63protein phosphatase 2C 51-like n=2 Tax=Prosopis al... [more]
A0A7S3MQ44_9SPIT3.560e-748.21Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig289contigH-paniculata_contig289:25008..26204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue6e-23
Seed eggNOG ortholog2880.D8LHX2
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K19705
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Exons2
Model size584
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.6202102-CDS-H-paniculata_contig289:25007..255561622929880.6202102-CDS-H-paniculata_contig289:25007..25556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 25008..25556 -
1691481052.5283031-CDS-H-paniculata_contig289:25007..255561691481052.5283031-CDS-H-paniculata_contig289:25007..25556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 25008..25556 -
1622929880.6348073-CDS-H-paniculata_contig289:26171..262041622929880.6348073-CDS-H-paniculata_contig289:26171..26204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26172..26204 -
1691481052.5405867-CDS-H-paniculata_contig289:26171..262041691481052.5405867-CDS-H-paniculata_contig289:26171..26204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig289 26172..26204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig289.7881.1prot_H-paniculata_contig289.7881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig289 25008..26204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig289.7881.1

>prot_H-paniculata_contig289.7881.1 ID=prot_H-paniculata_contig289.7881.1|Name=mRNA_H-paniculata_contig289.7881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
VKEACRIVDTQVKGKYFTPTGRFVPPRVYDVLDVTPPQALSNAHFADYDG
PLPSMLEYRNGSGDLGDCQHLDSGWWFGERPGQDGEKNTEKQEEKQILPN
GAGGLKDAIQQGGEAKRDINTTGNECGDQLSSMEDDDGQQGFSTCGTTSL
VVIITDQHVICCNSGDSRAVLASEGVSRPLSKDHKPDSPSERAR
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mRNA from alignment at H-paniculata_contig289:25008..26204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig289.7881.1 ID=mRNA_H-paniculata_contig289.7881.1|Name=mRNA_H-paniculata_contig289.7881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig289:25008..26204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGGAAGCGTGCCGGATTGTAGATACTCAGGCAGGTCGGAAGATCTG
TGGGCGTCACAGCGGTCACGTAACTACTGACTTGCGAACCATGAATGCTA
CGACTAGAAACCCACCACTTTCGCAAAACTTTATGAGTGGTGGATTGATA
GTAAATAGACGGTGCAAAGCAACTATGGAGTCTGGACTGACGAGCTGTTG
CCACACCGTGAGAGTTCTCAACTGACCCTCCCTGAGTGTCATCTATGATG
AGGTTGTGGAGCGGTCGCTTTTCGGGGTGTCACAGAATTTCTGCGTCGTC
GAGCCCCGAACGATGTCCTGGCTGGTTGGAACGCAAAAATCATTTTGATG
GCATCCCTGCCAGCGTAGAAGTCACATTTGGCGGTCAGTGCGTGATTACA
GGGGTTTCTAGATTTCTCAGCTGATGGTACTATCTATGTTCCTGGCGATC
GCGAGTATGAACCTGACAGAACGAAGGTCTCGCCTGTGATCCGTAAACAA
CAAGGTAAATATGGTAGGTCTAAACTGTAACGAGGTCGTGATATTATTCA
CCAGTCCGTGTCCATTCGAAGACTGGAGACAGTACGATCCGGACTACAAG
CCTTGCAGCGCTGGAATCAATTTGATCGCCTCGCTTGGTACTACTCAGGT
GAAAGGGAAATACTTCACGCCCACCGGGAGATTCGTGCCGCCTAGGGTAT
ACGACGTCCTCGACGTAACGCCGCCCCAGGCTCTGTCCAACGCCCATTTT
GCTGATTACGATGGACCACTCCCAAGCATGCTTGAATATCGCAATGGGTC
GGGAGATTTAGGAGACTGTCAACATCTCGACAGCGGTTGGTGGTTTGGAG
AAAGGCCAGGTCAAGATGGAGAAAAAAACACCGAAAAGCAAGAAGAGAAG
CAAATATTACCAAATGGTGCAGGGGGTCTAAAGGACGCTATACAGCAAGG
AGGAGAAGCTAAAAGGGATATCAACACTACGGGCAACGAGTGTGGTGACC
AGCTGTCGAGCATGGAGGATGACGATGGGCAGCAAGGGTTTTCGACATGC
GGTACGACTTCACTGGTGGTTATCATTACCGACCAGCACGTCATCTGCTG
CAACAGCGGGGACTCAAGAGCTGTTCTTGCGTCAGAGGGGGTGTCGAGAC
CTCTGTCGAAAGACCATAAGCCAGACAGTCCCTCAGAACGTGCAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig289:25008..26204-

>mRNA_H-paniculata_contig289.7881.1 ID=mRNA_H-paniculata_contig289.7881.1|Name=mRNA_H-paniculata_contig289.7881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig289:25008..26204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGGAAGCGTGCCGGATTGTAGATACTCAGGTGAAGGAAGCGTGCCG
GATTGTAGATACTCAGGTGAAAGGGAAATACTTCACGCCCACCGGGAGAT
TCGTGCCGCCTAGGGTATACGACGTCCTCGACGTAACGCCGCCCCAGGCT
CTGTCCAACGCCCATTTTGCTGATTACGATGGACCACTCCCAAGCATGCT
TGAATATCGCAATGGGTCGGGAGATTTAGGAGACTGTCAACATCTCGACA
GCGGTTGGTGGTTTGGAGAAAGGCCAGGTCAAGATGGAGAAAAAAACACC
GAAAAGCAAGAAGAGAAGCAAATATTACCAAATGGTGCAGGGGGTCTAAA
GGACGCTATACAGCAAGGAGGAGAAGCTAAAAGGGATATCAACACTACGG
GCAACGAGTGTGGTGACCAGCTGTCGAGCATGGAGGATGACGATGGGCAG
CAAGGGTTTTCGACATGCGGTACGACTTCACTGGTGGTTATCATTACCGA
CCAGCACGTCATCTGCTGCAACAGCGGGGACTCAAGAGCTGTTCTTGCGT
CAGAGGGGGTGTCGAGACCTCTGTCGAAAGACCATAAGCCAGACAGTCCC
TCAGAACGTGCAAGGGTGAAAGGGAAATACTTCACGCCCACCGGGAGATT
CGTGCCGCCTAGGGTATACGACGTCCTCGACGTAACGCCGCCCCAGGCTC
TGTCCAACGCCCATTTTGCTGATTACGATGGACCACTCCCAAGCATGCTT
GAATATCGCAATGGGTCGGGAGATTTAGGAGACTGTCAACATCTCGACAG
CGGTTGGTGGTTTGGAGAAAGGCCAGGTCAAGATGGAGAAAAAAACACCG
AAAAGCAAGAAGAGAAGCAAATATTACCAAATGGTGCAGGGGGTCTAAAG
GACGCTATACAGCAAGGAGGAGAAGCTAAAAGGGATATCAACACTACGGG
CAACGAGTGTGGTGACCAGCTGTCGAGCATGGAGGATGACGATGGGCAGC
AAGGGTTTTCGACATGCGGTACGACTTCACTGGTGGTTATCATTACCGAC
CAGCACGTCATCTGCTGCAACAGCGGGGACTCAAGAGCTGTTCTTGCGTC
AGAGGGGGTGTCGAGACCTCTGTCGAAAGACCATAAGCCAGACAGTCCCT
CAGAACGTGCAAGG
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