mRNA_H-paniculata_contig28895.7878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28895.7878.1
Unique NamemRNA_H-paniculata_contig28895.7878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A6H5K6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.800e-56
Identity = 90/110 (81.82%), Postives = 98/110 (89.09%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGHNYLG+FFAS DALLA GGVMVMQAITTPENRYEEYI+STDFINTIIFPGSCCPSL ALL AMA +S  SLEGLDN+CVHYA TL++WRHRFNHSL QV
Sbjct:  490 IISCEMIEAVGHNYLGTFFASADALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVHYAHTLKQWRHRFNHSLDQV 599          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: D7G9I1_ECTSI (Cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.710e-54
Identity = 90/110 (81.82%), Postives = 98/110 (89.09%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGHNYLG+FFAS DALLA GGVMVMQAITTPENRYEEYI+STDFINTIIFPGSCCPSL ALL AMA +S  SLEGLDN+CVHYA TL++WRHRFNHSL QV
Sbjct:  905 IISCEMIEAVGHNYLGTFFASTDALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVHYAHTLKQWRHRFNHSLDQV 1014          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S4DDE0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE0_HETAK)

HSP 1 Score: 173 bits (438), Expect = 1.180e-49
Identity = 79/110 (71.82%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGHNYLGSFFA+ + LL   GV VM+AITTPE+RY+EY++STDFINTI FPGSCCPSL ALLEAMARNSE+SLEG DNI +HYA+TL+EWRHRFN +L ++
Sbjct:  275 IISCEMIEAVGHNYLGSFFAAVERLLKPDGVFVMEAITTPESRYQEYLRSTDFINTIAFPGSCCPSLTALLEAMARNSEMSLEGYDNIGLHYAQTLREWRHRFNANLPEI 384          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S2XUH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUH5_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.770e-44
Identity = 72/110 (65.45%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGHNYLG F+ + ++LL   G++VM+AITTPE+RY EY++STDFINTIIFPGSCCPSL ALL+A ++NS L+LEG+DNIC+HYA TL+EWR RFN +L  V
Sbjct:  576 IISCEMIEAVGHNYLGQFYRAMESLLKPDGILVMEAITTPESRYVEYLRSTDFINTIIFPGSCCPSLTALLDAASKNSSLTLEGVDNICLHYAETLREWRRRFNKNLTAV 685          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A835ZDJ8_9STRA (Mycolic acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.690e-43
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSL 366
            ++ C  IEAVGHNYL S+FA+ +ALLA GGV VM+AITTPE+RY+EY++STDFINTIIFPGSCCPSL AL++AMA +S LSLEG +NI VHYA TL+EWR RF  +L
Sbjct:  561 IISCEMIEAVGHNYLPSYFAAVEALLAPGGVFVMEAITTPESRYKEYLRSTDFINTIIFPGSCCPSLTALMDAMASHSRLSLEGYENIGVHYAETLREWRCRFTDAL 667          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A4D9CY91_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY91_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.180e-41
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGH++LG +F +  +LL   GV VM+AITTPE+RY +Y+KSTDFINTI+FPGSCCPSL +LLEAMAR+S LSLEGL NI VHYA TL+EWR RFN  L  V
Sbjct:  813 IISCEMIEAVGHSHLGEYFHAVGSLLKPSGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTSLLEAMARHSALSLEGLINIDVHYAETLREWRRRFNRGLHAV 922          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S2PQB7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQB7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.060e-39
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHS 363
            V+ C  IEAVGH +LG FF + + +LA  G++VM+AITTPE RYE Y +STDFINTIIFPGSCCPSL+AL++A  + S L+LE +DNI +HYA+TL EWR RFN S
Sbjct:  152 VLSCEMIEAVGHEHLGEFFWAVEQVLAYDGILVMEAITTPETRYETYRRSTDFINTIIFPGSCCPSLHALVDASYKQSSLTLEHIDNIGLHYAQTLAEWRRRFNAS 257          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S2REM9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.100e-39
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            ++ C  IEAVGHNYLG+FF++ D LL  GG+ VM+AITTPE RY+E   + DFINT+IFPGSCCPSL ALL AMA  S  SLE LDNI +HYA TL+EWR RFN    +V
Sbjct:  795 IISCEMIEAVGHNYLGAFFSAVDRLLKPGGIFVMEAITTPECRYDEVRTAADFINTVIFPGSCCPSLQALLTAMAAKSNFSLERLDNINLHYAETLREWRRRFNQQRARV 904          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S4SWZ7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SWZ7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.150e-38
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   46 VVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            V+ C  IEAVGH +LG FF + + +LA  G++VM+AITTPE RYE Y++STDFINTIIFPG CCPSL+AL++A  + S L+LE +DNI +HYARTL EWR RFN +   V
Sbjct:  277 VLSCEMIEAVGHEHLGEFFWAVEQVLAPDGILVMEAITTPEARYETYLRSTDFINTIIFPGGCCPSLHALIDASYKQSTLTLEHIDNIGLHYARTLAEWRRRFNSNESTV 386          
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Match: A0A7S2DZ31_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZ31_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.090e-38
Identity = 74/123 (60.16%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    7 LSSNRDFNRLLCFVVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQAITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGLDNICVHYARTLQEWRHRFNHSLKQV 375
            L++ R F+R    +V C  IEAVGHNY GS+F + D LLA+ GV VMQAIT PE RYEE   + DFINTIIFPGS CPS++ALL AMA+ S+LSLE LD + +HYA TL+EWR RF+  L  V
Sbjct:  230 LANPRAFDR----IVSCEMIEAVGHNYYGSYFEAVDMLLAKDGVFVMQAITIPEARYEEVRHAADFINTIIFPGSNCPSVHALLAAMAKKSKLSLEKLDQLNLHYAETLREWRRRFHLRLDDV 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28895.7878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6Z7_9PHAE7.800e-5681.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9I1_ECTSI1.710e-5481.82Cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
A0A7S4DDE0_HETAK1.180e-4971.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUH5_9STRA1.770e-4465.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZDJ8_9STRA1.690e-4370.09Mycolic acid cyclopropane synthetase-domain-contai... [more]
A0A4D9CY91_9STRA2.180e-4166.36Amino_oxidase domain-containing protein n=1 Tax=Na... [more]
A0A7S2PQB7_9STRA3.060e-3963.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2REM9_9STRA3.100e-3963.64Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S4SWZ7_9STRA1.150e-3860.91Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2DZ31_9STRA2.090e-3860.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28895contigH-paniculata_contig28895:442..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.3e-47
Seed eggNOG ortholog2880.D7G9I1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid biosynthetic process
EggNOG OGs2QSMW@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.2983673-CDS-H-paniculata_contig28895:441..6671622929880.2983673-CDS-H-paniculata_contig28895:441..667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28895 442..667 +
1691481052.4149787-CDS-H-paniculata_contig28895:441..6671691481052.4149787-CDS-H-paniculata_contig28895:441..667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28895 442..667 +
1622929880.3243253-CDS-H-paniculata_contig28895:1486..16411622929880.3243253-CDS-H-paniculata_contig28895:1486..1641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28895 1487..1641 +
1691481052.428202-CDS-H-paniculata_contig28895:1486..16411691481052.428202-CDS-H-paniculata_contig28895:1486..1641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28895 1487..1641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28895.7878.1prot_H-paniculata_contig28895.7878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28895 442..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28895.7878.1

>prot_H-paniculata_contig28895.7878.1 ID=prot_H-paniculata_contig28895.7878.1|Name=mRNA_H-paniculata_contig28895.7878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
KCLSSNRDFNRLLCFVVICRQIEAVGHNYLGSFFASCDALLAQGGVMVMQ
AITTPENRYEEYIKSTDFINTIIFPGSCCPSLNALLEAMARNSELSLEGL
DNICVHYARTLQEWRHRFNHSLKQVN*
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mRNA from alignment at H-paniculata_contig28895:442..1641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28895.7878.1 ID=mRNA_H-paniculata_contig28895.7878.1|Name=mRNA_H-paniculata_contig28895.7878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig28895:442..1641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTGTTTATCCTCCAACAGGGATTTTAATCGGCTTTTGTGTTTTGTGGT CATTTGTCGGCAGATCGAGGCGGTAGGTCATAATTACCTGGGCTCGTTCT TCGCCTCGTGCGACGCGCTGCTGGCGCAGGGGGGAGTGATGGTGATGCAG GCAATCACCACGCCTGAGAATCGGTACGAGGAGTATATCAAGTCCACCGA CTTCATTAACACCATCATATTCCCCGGTACGTTTGTGCTGGAAAATTTGC AATTATACTGTGTAGGGTTGTCGCCGCGATTTTTGTCTATTTATTGGTTA TTATTATTAGTATTAGTTTTAGTTTTGGTTTTAGTTTTAGTTATAATTTT ATTTATTTATTTTCTGTGAAGTGTCGAGGTTAGGGGTAGGCTTGGGATTA TTTAAGAAATTAGCGTTTCTTTCGGATGTCGGAAAGGAAATAATGTTGTA GCGCAACGTTGGCGCAGGTGGACTGGGGTCCGGGAGTCGACTTAAAGGGC CAAATCGTATTTTTTTACAAACATGTCTTTGCTGGCGCAAACATTTGGGT AACTTTTTTTCTTTTTTTGTTATGAGATGTTGATTGCGGGACGTGATAGT CATTGTCTAATGTGACGGTTACATCCCCAATCCCCGGATTACGTAAGGTA GCCTCAGTTTGAGCTGGGAGCAGGAAGCGCGGACCGTGCTACTACCCCAC CAACTGTCAGACTTGTATCGACCCAGGGATTTTCCTGTCGTACAGCAATA TACAGCTAATACAATAGACCAGGCCATTGCCACGGACTACTTCTACCACC CCAGCCGTACCGCTCTGAGAGTATTGTGCAGTATAGTCAGTAACAGGAAA CAATAACCTACGTGTGTGAGATACTCCGCTATACAGACAGCAGTTATCAT TACATTTTTTCCCAAGTTTTTTTTTTGGTTAACATTTGTTCGTTTGTTTG TTTGTTTCCTGTGCTTGCTGTAGCAGCCGACGAACTTCTTTTCAATCCCA TTTTTTTTATCTGTGTTCGTTGTTGTTTGCTTGTTTGTTTGACAGGGTCC TGCTGCCCATCGCTGAATGCTCTCTTGGAAGCCATGGCGAGAAACAGCGA GCTCTCTTTGGAAGGCCTGGACAATATATGCGTGCACTACGCGCGCACTC TACAGGAGTGGCGGCATCGGTTCAACCACAGCCTGAAACAGGTAAATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28895:442..1641+

>mRNA_H-paniculata_contig28895.7878.1 ID=mRNA_H-paniculata_contig28895.7878.1|Name=mRNA_H-paniculata_contig28895.7878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig28895:442..1641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTGTTTATCCTCCAACAGGGATTTTAATCGGCTTTTGTGTTTTGTGGT
CATTTGTCGGCAGATCGAGGCGGTAGGTCATAATTACCTGGGCTCGTTCT
TCGCCTCGTGCGACGCGCTGCTGGCGCAGGGGGGAGTGATGGTGATGCAG
GCAATCACCACGCCTGAGAATCGGTACGAGGAGTATATCAAGTCCACCGA
CTTCATTAACACCATCATATTCCCCGAAGTGTTTATCCTCCAACAGGGAT
TTTAATCGGCTTTTGTGTTTTGTGGTCATTTGTCGGCAGATCGAGGCGGT
AGGTCATAATTACCTGGGCTCGTTCTTCGCCTCGTGCGACGCGCTGCTGG
CGCAGGGGGGAGTGATGGTGATGCAGGCAATCACCACGCCTGAGAATCGG
TACGAGGAGTATATCAAGTCCACCGACTTCATTAACACCATCATATTCCC
CGGGTCCTGCTGCCCATCGCTGAATGCTCTCTTGGAAGCCATGGCGAGAA
ACAGCGAGCTCTCTTTGGAAGGCCTGGACAATATATGCGTGCACTACGCG
CGCACTCTACAGGAGTGGCGGCATCGGTTCAACCACAGCCTGAAACAGGT
AAATTAGGGTCCTGCTGCCCATCGCTGAATGCTCTCTTGGAAGCCATGGC
GAGAAACAGCGAGCTCTCTTTGGAAGGCCTGGACAATATATGCGTGCACT
ACGCGCGCACTCTACAGGAGTGGCGGCATCGGTTCAACCACAGCCTGAAA
CAGGTAAATTAG
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