mRNA_H-paniculata_contig2889.7875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: D8LJR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR3_ECTSI) HSP 1 Score: 339 bits (869), Expect = 1.640e-103 Identity = 170/323 (52.63%), Postives = 224/323 (69.35%), Query Frame = 2
Query: 881 RTLNMGKKWDKAQALAEAKRKPLKANRPARVRPQQRSFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHYMDDKLETPHFTATNPLVPPVKITQNGYTFPTEESEG-GDGEVPSPPHAT--DKNGLRFYSTEEAGKCLPTPPVNGMVVCANSGRYPPVTKFMR-KKWNPFEEAAGRMVHGVSVLVEPWTKDDMMPLLEHFVEDKVVRGE 1837
+ L G W++ +ALAE+KRKPLK R ++P QRS+LLTG RG GKSC+L+ VLHARSTGWIV+FVPD +L+ +GIYC PSP +G+YDLP S+K L L+ AHG+QLK ++I+DPEVL RHEGA TLLD++D G+ ++E AGT H DV+REL A+TEAKV+LA+D YNE FQ S WHY D+KLE PH TAT PL+PP+ T G F + + EV + T + G+ + S E CLP PP NG+VVCA SGRYPP+ + + KKW PFE AGR+ VS+ VEP+T+ + + +L+H+ + V E
Sbjct: 320 KVLGSGPVWEEMKALAESKRKPLKGVRRVVIQPGQRSYLLTGRRGSGKSCVLDHAVLHARSTGWIVLFVPDGRNLVQKGIYCQPSPVLEGLYDLPVQSMKRLKTLREAHGDQLKNISIKDPEVLGRHEGAKTLLDVMDMGLADQEHAGTAHYDVMRELLATTEAKVMLAIDEYNELFQMSQWHYGDNKLEAPHLTATLPLLPPLVSTGTGLAFADDSVAALANPEVVAERKRTPAEAGGVAWMSPETGAACLPPPPANGIVVCAVSGRYPPLKRLRKNKKWVPFEATAGRLAQAVSIPVEPYTRREFLRVLKHYARVEEVVNE 642
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A6H5KXH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH7_9PHAE) HSP 1 Score: 206 bits (524), Expect = 1.600e-54 Identity = 128/308 (41.56%), Postives = 168/308 (54.55%), Query Frame = 2
Query: 881 RTLNMGKKWDKAQALAEAKRKPLKANRPARVRPQQRSFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPK--HSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHYMDDK-------LETPHFTATNPLVPPVKITQNGYTFPTEESEG-GDGEVPSPPHAT--DKNGLRFYSTEEAGKCLPTPPVNGMVVCANSGRYPPVTKFMR-KKWNPFEEAAGRMVHGVSVLV 1765
+ L G W++ +ALAE+KRKPLK R ++P Q G G ++ + + P+P + P S+K L L+ AHG+QLK ++I+DPEVL RHEGA TLLD++D G+ ++E AGT H DV+REL A+TEAKV+LA+D YNE FQ S W+Y D K LE PH TAT PL+PP+ T G F + + EV + T + G + S E CLP PP NG+VVCA SGRYPPV + + KKW PFE AGR+ VSV V
Sbjct: 316 KVLGSGPVWEEMKALAESKRKPLKGVRRVVIQPGQ---------GGGAPARAASSIMPSST----------------------PAPAHPTLRSPPPVLQSMKRLKTLREAHGDQLKNISIKDPEVLGRHEGAKTLLDVMDMGLADQEHAGTAHYDVMRELLATTEAKVMLAIDEYNELFQMSHWYYGDSKASAAVSRLEAPHLTATLPLLPPLVSTGTGLAFADDSVAALANPEVVAETKRTPAEAGGGAWMSPETGAACLPPPPANGIVVCAVSGRYPPVKRLRKNKKWVPFEATAGRLAQAVSVRV 592
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A7S3ZXU8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXU8_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.790e-22 Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 2
Query: 977 PQQRSFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGATTLLDLVDRGVDNE---EAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHYMD 1438
P + ++LLTGARG GKS L QIV AR+ GW+ +FV A D+ H G Y PSP G ++ P S ++L A + AHG L + D A G TL ++V +D++ + A T DVV L+A A VL+AVD Y+ F+P+ +Y D
Sbjct: 146 PPRDAYLLTGARGAGKSVALAQIVTQARARGWLCLFVARARDVGHHGDYVVPSPHHAGRFEEPSRSREVLEAFREAHGNDLATVKCTD--AAAERWGGATLREVVGAALDDKKRGDEASTALADVVDGLRAHDAAPVLIAVDEYSALFEPATAYYYD 300
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A7S2WS36_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS36_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.450e-19 Identity = 60/183 (32.79%), Postives = 97/183 (53.01%), Query Frame = 2
Query: 995 LLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHYMDDKLETPHFTATNPLVPPVKITQNGYTFPTEESEGG 1543
L + RGVGKS L V AR GW+V+FV D+ + + G + PSP +GM+D P+ + +L A HGE + L +Q E A ATTL +L+ G+ +++AA D+ EL A T+ LLA+D+ + ++ + +H+ KL+ T + L ++++G P E + G
Sbjct: 129 LTSDFRGVGKSLSLAHAVHWARDQGWVVLFVTDSLEFVQGGHWVQPSPYVEGMFDQPQVAHAVLEEFHAIHGEAVASLPVQTDEAKAHFSSATTLGELMQAGLADQDAASQAVADLRLELGAQTDLPFLLAIDNVDLLYRNTEYHHDMRKLDPAEMTLLHGL---RDLSKDGELIPGREIQNG 308
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: W7TU02_9STRA (Mitochondrial 28s ribosomal s29-like protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU02_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.200e-17 Identity = 60/155 (38.71%), Postives = 80/155 (51.61%), Query Frame = 2
Query: 992 FLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHE--GATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHYMDDKLE 1450
FLL+G RG GK+ L V +AR +GW+V FVP A++ LH G PSP + G +D P + L L AHG Q L P L E G T DL+ G+ + A T L++ R L+ VL AVD +E+F PS + Y K+E
Sbjct: 421 FLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLPYTAPRGLESLELSGEYTCWDLMALGLSQRKWATTCLLELKRALENQDAYPVLFAVDEVSEWFYPSSYFYARKKIE 575
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A0N7L5J3_PLAHL (Atp-dependent dna helicase snf21 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5J3_PLAHL) HSP 1 Score: 97.8 bits (242), Expect = 3.340e-17 Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = 2
Query: 989 SFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQD---------------PEVLARH-EGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHY 1432
++L+ G RG GKS L+QIV AR + W+V++VP+ H Y SP +G +D+ + + +L HGEQ+K + ++ P+V++ + E A TL D+V G+ +EE A D+ EL +TE VL+A+D YN +FQP+++ Y
Sbjct: 129 AYLIDGIRGTGKSFALHQIVQFARESNWVVLYVPNPRSWTHEAPYVVLSPYQEGKFDIDVYGVDLLQKFLHCHGEQIKSIPLRGKYTDRYYPTNKFESKPKVVSDYAEAALTLHDVVVCGIRDEELACQAVCDLKAELAQTTEFPVLIAIDDYNTWFQPTVFGY 292
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A0W8DF35_PHYNI (COP9 signalosome complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DF35_PHYNI) HSP 1 Score: 95.5 bits (236), Expect = 5.700e-17 Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 2
Query: 989 SFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQD---------------PEVLARH-EGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPSMWHY 1432
++L+ G RG GKS L+QIV +AR + W+V+++P+ + Y SP +G +D+ + + +L HGEQLK + ++ P+ A + + A TL D+V GV +EE A D+ EL +TE VL+A+D YN +FQP+++ Y
Sbjct: 229 AYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQTTEFPVLIAIDDYNTWFQPTVFGY 392
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A8K0UVS7_9AGAM (Mitochondrial ribosomal death-associated protein 3-domain-containing protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0UVS7_9AGAM) HSP 1 Score: 72.0 bits (175), Expect = 1.460e-9 Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 2
Query: 992 FLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRG---IYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQ-----DPEVLARHEGATTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFFQPS 1420
+ TG+ G GKS ++ Q + +A+S G++V++VP A L+ +Y + T Y PK+S +L+ + + L+QL + D + H+G+ L+DL+D GV + A + V EL T+ VLLAVD + FF P+
Sbjct: 171 LVFTGSAGNGKSYLMLQAIAYAKSIGYLVVYVPRASRLVDSSTAYVYDARTQT----YAQPKYSSSLLSRILTVNDSSLQQLKLHKDFLADDGSVRLHKGSP-LVDLIDLGVRDASVAHVVLSAVFEELAKQTQFPVLLAVDDFQSFFNPT 316
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A1D1XKY6_9ARAE (28S ribosomal protein S29, mitochondrial (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XKY6_9ARAE) HSP 1 Score: 71.6 bits (174), Expect = 2.210e-9 Identity = 50/159 (31.45%), Postives = 76/159 (47.80%), Query Frame = 2
Query: 983 QRSFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGA----------------TTLLDLVDRGVDNEEAAGTLHLDVVRELKASTEAKVLLAVDSYNEFF 1411
Q+ +L G GKS L +V ARS W+V +VP+ + H G + S T G++D P H+ K L + L++L IQ + + EGA +TLLDLV G++ + AA + + + EL + VL A+D YN +F
Sbjct: 230 QKQIVLDGPVSCGKSIALAMLVYWARSEDWLVFYVPNGREWTHGGFFYKNSQT--GLWDTPVHATKTLQDFLKFNEPHLQKLPIQVFDPIPLGEGAGIRMRKDADSMAMPEDSTLLDLVQTGIEVQHAAVGVLVRLRTELSMVKDVPVLFAIDQYNSWF 386
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Match: A0A1Z5JXK7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXK7_FISSO) HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7 Identity = 49/166 (29.52%), Postives = 77/166 (46.39%), Query Frame = 2
Query: 989 SFLLTGARGVGKSCMLNQIVLHARSTGWIVIFVPDAWDLLHRGIYCCPSPTFDGMYDLPKHSLKMLAALKAAHGEQLKQLNIQDPEVLARHEGATTLLDLVDRGVDNEEAAGTLHLDVVRE--------LKAST--------EAKVLLAVDSYNEFFQPSMWHYMD 1438
S L++G +GVGK+ + IV ARS+G++V+++P+ L G Y P+P G++D+P S + H + LN+ V+A H L L D+ + A LD R L A+ E LLA+D +N F+ PS + + D
Sbjct: 292 SILVSGCQGVGKTAAVAAIVASARSSGYLVLYLPNGDQLHQNGFYVEPNPQKKGIFDIPIMSQRACDDFLKTHKSDMIGLNVPKG-VIAEHLAKDQLQRLFRDAKDDSQIALNALLDFGRGRINFAAPCLSAAMDYLMYHQDEKPFLLAMDEFNCFYMPSHYFHAD 456 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2889.7875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2889.7875.1 >prot_H-paniculata_contig2889.7875.1 ID=prot_H-paniculata_contig2889.7875.1|Name=mRNA_H-paniculata_contig2889.7875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=602bp MMARVGLLRARGGGHTFTGNHHQSLFYRSGTSAARSVASGRAASARSSQAback to top mRNA from alignment at H-paniculata_contig2889:5201..10741+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2889.7875.1 ID=mRNA_H-paniculata_contig2889.7875.1|Name=mRNA_H-paniculata_contig2889.7875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5541bp|location=Sequence derived from alignment at H-paniculata_contig2889:5201..10741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2889:5201..10741+ >mRNA_H-paniculata_contig2889.7875.1 ID=mRNA_H-paniculata_contig2889.7875.1|Name=mRNA_H-paniculata_contig2889.7875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3612bp|location=Sequence derived from alignment at H-paniculata_contig2889:5201..10741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |