mRNA_H-paniculata_contig2889.7874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2889.7874.1
Unique NamemRNA_H-paniculata_contig2889.7874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: D8LJR2_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR2_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 2.870e-142
Identity = 203/219 (92.69%), Postives = 214/219 (97.72%), Query Frame = 1 
Query:    1 MSIAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            MSIAP+SQFFILSPRGDTIISKDYRG+ VAGTTDTFFRKVKFWE GDPPPCF IDGVNY+YVRKNGLLFAVS+QWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKS+RLP++LKTKTAPSSS+QKPVSG  QK+G+QRNEIFVDILERL+VLFSQSGQVVNSSIDGCIQMKSYLSG
Sbjct:    1 MSIAPVSQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKVKFWESGDPPPCFTIDGVNYIYVRKNGLLFAVSTQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSMRLPSALKTKTAPSSSIQKPVSGSGQKNGSQRNEIFVDILERLSVLFSQSGQVVNSSIDGCIQMKSYLSG 219
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BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A835YW81_9STRA (Coatomer protein complex, gamma sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW81_9STRA)

HSP 1 Score: 330 bits (847), Expect = 1.140e-109
Identity = 163/219 (74.43%), Postives = 187/219 (85.39%), Query Frame = 1 
Query:    1 MSIAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            MSIAPIS FFILSPRGDTIISKDYRG+VV G TD FFRKVKF EGGDPPPC NIDGVNY++VRKNGLLF V+++WN SPS  +ELL+RLAKVFKDYCG L+EEAIRKNFIL+YELLDE LDYGYPQ T TE+L+++V NEPI V+  KSLR+P++L  KT PSS+  KP++G       QRNEIFVDILERLNVLF  +GQ++NSSIDGCIQMKSYLSG
Sbjct:    1 MSIAPISHFFILSPRGDTIISKDYRGDVVPGGTDIFFRKVKFTEGGDPPPCMNIDGVNYLFVRKNGLLFGVTTRWNCSPSQVIELLHRLAKVFKDYCGTLTEEAIRKNFILIYELLDEMLDYGYPQTTGTESLKSYVYNEPIAVEPSKSLRIPSTLGAKTNPSSAAHKPITGSTG-GAKQRNEIFVDILERLNVLFGANGQILNSSIDGCIQMKSYLSG 218
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A7S2S1C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1C5_9STRA)

HSP 1 Score: 305 bits (781), Expect = 1.880e-100
Identity = 147/217 (67.74%), Postives = 185/217 (85.25%), Query Frame = 1 
Query:    7 IAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +A +S FFILSPRGDTII KD+RG+   GT + FFRKVKFWE GD PP F+IDGV++V++RKNGLLF  +S++N+SPS+ +ELL+RLAKVFKDYCGVLSEEAIRKNFILVYELLDE +DYGYPQGTSTE+L++ + NEPI+V++ ++ R+P  + +KT PS S QKP++   ++ G Q+NEIFVDILERLNVLFS SG ++NS+IDGCIQMKSYLSG
Sbjct:    1 MASLSLFFILSPRGDTIILKDFRGDCPPGTAEAFFRKVKFWEHGDAPPVFSIDGVHFVFIRKNGLLFVGTSRFNLSPSISIELLHRLAKVFKDYCGVLSEEAIRKNFILVYELLDEMIDYGYPQGTSTESLKSFIHNEPIVVEATRATRMPT-ISSKTTPSVSAQKPITYQRERQGKQKNEIFVDILERLNVLFSPSGTILNSTIDGCIQMKSYLSG 216
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A4D9D754_9STRA (MHD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D754_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.180e-96
Identity = 146/215 (67.91%), Postives = 181/215 (84.19%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKS-LRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +S FFILSPRGDTIIS+D+RG+ +    +  FRKVKFW+ GD PP F++DG+N+VYVRKNGLLF  ++++NVSPS  +ELLNR+AKVFKDYCGVLSEE+IRKNFILVYELLDE +D+GY Q TSTE+L+NHV NEPI+V+S KS LR+P  + +KT PS++V KP++   Q  G Q+NEIFVDILERLNVLFS SG ++NS+IDGCIQMKSYLSG
Sbjct:    5 MSSFFILSPRGDTIISRDFRGDSLPNAAELLFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPK-INSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSG 218
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BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A7S2SFF0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SFF0_9STRA)

HSP 1 Score: 285 bits (729), Expect = 7.900e-92
Identity = 141/221 (63.80%), Postives = 182/221 (82.35%), Query Frame = 1 
Query:    7 IAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGG-DPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVK---SLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            ++ ISQF+ILSPRGDTIIS+DYR NV  G ++ FFR VKFW+GG + PPCFNIDG+N+V+++++GL F  ++++NVSP+ FLELL RLAK+FKDYCGVLSEEAIRKNFIL+YELLDE +DYGYPQ TSTE L+ HV NEP++VDS+K   + ++P S+  KT PSSSV KPV+    ++G QRNEIFVDILER+ +LF+ +G +++S IDG IQMKSYL G
Sbjct:    1 MSSISQFYILSPRGDTIISRDYRSNVAKGASEIFFRNVKFWQGGGEAPPCFNIDGINFVFIKQSGLYFVCTTKYNVSPNFFLELLQRLAKLFKDYCGVLSEEAIRKNFILIYELLDEIVDYGYPQCTSTEQLKAHVHNEPVVVDSIKQANAFKVP-SINQKTTPSSSVYKPVTMA-ARNGQQRNEIFVDILERVTMLFNNNGYILSSHIDGSIQMKSYLFG 219
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: F0Y376_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y376_AURAN)

HSP 1 Score: 280 bits (716), Expect = 7.210e-90
Identity = 145/223 (65.02%), Postives = 175/223 (78.48%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEG-----GDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSLRLPASLKTKTAPSSSVQKPVSGGNQK----SGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +SQFF+LSPRGDTIISKD+RG+   G  + FFRKVKFW       G  PP F +  V YV+V+K+GL+FA +S++N SPSM LELLNR+ KVFKDYCGVLSEEAIRKNFIL+YELLDE +D+GYPQGTSTE L+  V NEP+LVD+ K+ R+P SL  KT PS+SV KP++GG       + + +NEIFVDILERL +LFS SG VVNS+IDGCIQMKSYLSG
Sbjct:    2 LSQFFVLSPRGDTIISKDFRGDSPQGAAEAFFRKVKFWSNDKGASGAAPPVFRVGDVTYVWVKKSGLMFACNSRFNCSPSMTLELLNRVVKVFKDYCGVLSEEAIRKNFILIYELLDEVIDFGYPQGTSTENLKAFVYNEPVLVDAQKT-RVP-SLSAKTTPSTSVHKPIAGGKSSVMGGARSDKNEIFVDILERLTMLFSPSGAVVNSTIDGCIQMKSYLSG 222
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A7S2UX12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX12_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.730e-87
Identity = 138/223 (61.88%), Postives = 174/223 (78.03%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDS-------VKSLRLPASLKTKTAPSSSVQKPVSGGNQ-KSGT-QRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +SQFFILSPRG+TIISK YRG+  AG  + FFRKVKFWEGGD PP FN+DG NY+Y+++NG++F  ++ +N SP+  +ELLNR+ K+FKDYCGVLSEEAIRKNF+L+YELLDE +DYG+PQ TSTE L+N++ NEP+LVD         ++LR   +     AP+SS  KPV G  + K+G  QRNEIFVDI+ERLNVLFS SG  +NSSIDG IQMKS+L+G
Sbjct:   24 VSQFFILSPRGETIISKTYRGSFKAGAAEEFFRKVKFWEGGDAPPAFNLDGTNYIYIKRNGIIFLFTTMFNSSPATLIELLNRIIKIFKDYCGVLSEEAIRKNFVLLYELLDEVIDYGHPQCTSTEALKNYIYNEPVLVDQRGIAGQVQRNLRRVTN--PNKAPASSGAKPVQGATKGKAGAKQRNEIFVDIIERLNVLFSPSGYTLNSSIDGRIQMKSFLTG 244
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A7S1C3I7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3I7_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.700e-87
Identity = 139/219 (63.47%), Postives = 178/219 (81.28%), Query Frame = 1 
Query:    7 IAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDS--VKSLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +A I QFFILSPRGDTIISK YRG+VVAGT++ FFRKVKFW+G D PP F IDG+N++++++NGL F  ++++NVSPSM +ELL+R+AKVFKDYCGVLSEE+IRKNFILVYELLDE +DYGY QGT+TETL+ +V NEPI++ S      +LP     KT  +S+V  P+S   ++ G ++NEIFVDILERL VLF+ +G V+NS+IDG IQMKSYL+G
Sbjct:   41 VAMIGQFFILSPRGDTIISKQYRGDVVAGTSEIFFRKVKFWKG-DAPPVFVIDGINFLFIKRNGLYFVATTRFNVSPSMTIELLDRVAKVFKDYCGVLSEESIRKNFILVYELLDELVDYGYAQGTTTETLKAYVYNEPIVLASGGAGGFKLPTGGSGKTKSASAVHAPISLAGRRKG-KKNEIFVDILERLTVLFNSNGYVLNSTIDGSIQMKSYLTG 257
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A2R5G7K4_9STRA (AP-4 complex subunit mu n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7K4_9STRA)

HSP 1 Score: 269 bits (687), Expect = 2.060e-85
Identity = 136/220 (61.82%), Postives = 173/220 (78.64%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEG---GDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVK---SLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            +SQF+ILSPRGDTIIS+++R +V  GT + FF  VKFW+G    + PPCFNIDGVNY++++++GL F  ++++NVSP+  LELL RLAK+FKDYCGVLSEEAIRKNF+L+YELLDE LDYGYP  +STE L+ HV NEP++VD +K   S ++P  +  KT PSSSV KPV+    KSG QRNEIFVDILERL +LF+ +G  ++S IDG I MKSYLSG
Sbjct:    4 VSQFYILSPRGDTIISRNFRSDVDKGTAEVFFHSVKFWKGDGGNEAPPCFNIDGVNYIFIKQSGLYFVCTTKYNVSPNFALELLARLAKLFKDYCGVLSEEAIRKNFVLIYELLDEVLDYGYPMVSSTEQLKVHVHNEPVMVDMIKQANSFKMPT-MNQKTTPSSSVYKPVTLA-AKSGQQRNEIFVDILERLTMLFNGNGYTLSSHIDGSIVMKSYLSG 221
[Close]
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Match: A0A7S3MBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBD4_9STRA)

HSP 1 Score: 261 bits (666), Expect = 6.020e-85
Identity = 125/214 (58.41%), Postives = 164/214 (76.64%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPPCFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSLRLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSGQVVNSSIDGCIQMKSYLSG 657
            I QFFILSPRGDTII+KD+RG+ + G  D FFRKVKFW+ GD PP F ID ++Y+++R+N LL   ++++NVSPS  +ELLNR+AKVFKDYCGVL+EE+IRKNFIL+YELLDE LDYGYPQ TSTE L+N V NE ++V       +  ++ + T  +++   P++  N + G  +NEI+VDI+ERL +LFS +G VVNSSIDG I MKS+LSG
Sbjct:   20 IGQFFILSPRGDTIINKDFRGDAIPGQQDLFFRKVKFWDKGDSPPVFQIDDISYIFIRRNQLLIVCTTKYNVSPSATIELLNRMAKVFKDYCGVLTEESIRKNFILIYELLDEMLDYGYPQITSTEMLKNCVHNEAVVVAKPSMTSVMGTIGSGTKSANAANVPITMMNTRGGANKNEIYVDIVERLTILFSNTGYVVNSSIDGSIMMKSFLSG 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2889.7874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR2_ECTSI2.870e-14292.69Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A835YW81_9STRA1.140e-10974.43Coatomer protein complex, gamma sub-unit n=1 Tax=T... [more]
A0A7S2S1C5_9STRA1.880e-10067.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D754_9STRA1.180e-9667.91MHD domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2SFF0_9STRA7.900e-9263.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
F0Y376_AURAN7.210e-9065.02MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2UX12_9STRA1.730e-8761.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1C3I7_9STRA7.700e-8763.47Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5G7K4_9STRA2.060e-8561.82AP-4 complex subunit mu n=1 Tax=Hondaea fermentalg... [more]
A0A7S3MBD4_9STRA6.020e-8558.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2889contigH-paniculata_contig2889:239..4884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue1.7e-114
Seed eggNOG ortholog2880.D8LJR2
KEGG koko:K12402
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019904,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090160,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1903361,GO:1990778
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0937@1,KOG0937@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size657
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2889.7874.1prot_H-paniculata_contig2889.7874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2889 239..4884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.8724117-CDS-H-paniculata_contig2889:238..3231622929879.8724117-CDS-H-paniculata_contig2889:238..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 239..323 -
1691481052.200426-CDS-H-paniculata_contig2889:238..3231691481052.200426-CDS-H-paniculata_contig2889:238..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 239..323 -
1622929879.893821-CDS-H-paniculata_contig2889:1319..14291622929879.893821-CDS-H-paniculata_contig2889:1319..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 1320..1429 -
1691481052.2147896-CDS-H-paniculata_contig2889:1319..14291691481052.2147896-CDS-H-paniculata_contig2889:1319..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 1320..1429 -
1622929879.9103477-CDS-H-paniculata_contig2889:1744..19001622929879.9103477-CDS-H-paniculata_contig2889:1744..1900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 1745..1900 -
1691481052.2279189-CDS-H-paniculata_contig2889:1744..19001691481052.2279189-CDS-H-paniculata_contig2889:1744..1900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 1745..1900 -
1622929879.9259865-CDS-H-paniculata_contig2889:2735..29241622929879.9259865-CDS-H-paniculata_contig2889:2735..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 2736..2924 -
1691481052.2367513-CDS-H-paniculata_contig2889:2735..29241691481052.2367513-CDS-H-paniculata_contig2889:2735..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 2736..2924 -
1622929879.9514482-CDS-H-paniculata_contig2889:4767..48841622929879.9514482-CDS-H-paniculata_contig2889:4767..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 4768..4884 -
1691481052.2456203-CDS-H-paniculata_contig2889:4767..48841691481052.2456203-CDS-H-paniculata_contig2889:4767..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2889 4768..4884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2889.7874.1

>prot_H-paniculata_contig2889.7874.1 ID=prot_H-paniculata_contig2889.7874.1|Name=mRNA_H-paniculata_contig2889.7874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MSIAPISQFFILSPRGDTIISKDYRGNVVAGTTDTFFRKVKFWEGGDPPP
CFNIDGVNYVYVRKNGLLFAVSSQWNVSPSMFLELLNRLAKVFKDYCGVL
SEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKSL
RLPASLKTKTAPSSSVQKPVSGGNQKSGTQRNEIFVDILERLNVLFSQSG
QVVNSSIDGCIQMKSYLSG
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mRNA from alignment at H-paniculata_contig2889:239..4884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2889.7874.1 ID=mRNA_H-paniculata_contig2889.7874.1|Name=mRNA_H-paniculata_contig2889.7874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4646bp|location=Sequence derived from alignment at H-paniculata_contig2889:239..4884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAATCGCACCCATCTCCCAGTTCTTCATCCTCTCGCCAAGGGGAGA
CACCATTATATCTAAGGACTACCGGGGGAATGTTGTGGCGGGAACGACTG
ACACTTTCTTTCGCAAGGTGGGTGAGCTTGGAGCATCACTTTTAGAGAAA
CGGATACACCAGCTTTATATACAGTACAGTGTCTTTGATTAGAACAAGGC
GGCGGGATTGAATGCCCTTTGAGACTGTCAGCATTTCGTGCAAAGATGAG
GTGTGGAGAGGTGGAGAGGTGCACACAGCTGAGTATATGTATCTCTTGTA
TGCCTCGGTAAACTATGGCGTGAGCTCTGTCCGACGGTCATTGAATTCGG
AACCTCCATGCAGCCTCGTAGGAATTTGCTGTTCGAGGTAGTGCTGGTGG
GATCTGCTGCTGTACACATGTACTGACTGTTTATATAACTGCACACACGT
GTTTGGGAGCGCTGCACTGCTCTTGGAGAGGCTTGCACGCGTTACATGGT
TGTTTGGTGCTACCTACAGCAGCGTGAGGGCTCGCTTTCAAACTCTAGCT
ATTTGGTTTTCAATTTTACTGTAAATCCAACCCTTTTTATGAAACCTTGC
ACCGCTCACGAAACAAGCAGATTAACCCGCTGTTTCGTCCTCACTAATTT
CAAAGTCAGTGCTGCAATCCCATGTTCAGATAGTCCCCACGGCACTTACG
GCAATGTTGAGTTCAATATGCTCTGTAACAAGTGTCGCGAGAAGTGTCGA
CTCACGTTTCCCGGTGAGTAAAACCTACATATAGCTTCCTAGTCTCTTCT
ACGCTAGTTTCCATCAGCAATTTTGGCGTCAGAGGCTATTTCGGAACAAA
AAGAGATATCTGACAGCAAATAGTGTCTGTCGAGCGTTGCTGCAGTAATT
ATTGGGTGCAACAATGCCAATCATCGGTCTGTGCTGTATGCCCCGTCTCA
ACAGCGGTGTCTCTCTCTTCCTGTAATTATGTCATGGGCGTCGGCTTTCA
CTGTTTGTGAGGGGAATAGATTAGGTAGGAATTAGGTGAGTATCGGCGCT
GAAGGGGTCAAGTCTTTTTGGAATTTCGGTCTTCTATCACCGCCACCGCG
CGCAACCAGCAGACACCGAGAATAAAAGAGGTTTGCCGCGACAAGCTGCT
GGTGTCAAGGTCAGGTCGCCACCGGTCTGGAAGATTTTCGTTGGATTTGG
CGCTCGAAATGTTAGAACAATTAGTACAATGCGACAGCATGACAAGTAGG
AGTTTTGCTTCGGGCCCCTTCCAGCAAACTTTTGTATGTGCTTAATTTGG
TCATGATCCAGTAGAAAAGGAGAAACCTCGCTTCGGTCGGTTACACCCAT
AGAAGATCAAAAGGAGAAAGGGGTTCGGGTTTCCGTGGAACGGTAGCTAC
TTTCTTCTGCCGAAGTATGTCATTATTGAAAGCCTCTCACTTCAGTAGTA
GCTTGACTCGGGTAAGGAGTGGATGGGTGGGTGAATCCTGTAGTCACACG
GATAGTGTACACCATATTAACCTTCAGCTAGCTGCTTTACAGCACGTCGG
TGTACTGTTTGGGGACATTCCAAGGATTGACATATTTGTGCCCTCGGCTG
TGGTGCGGTAACTCCTTGATTGTGCTGACTTTAAAATACCCAACCTTCCT
GTCAGATGCAAACGACACAGCTCCAGGTCTGAGGAACGCTGTATCTCGAC
GTCAAAATTACTGCCTTCTTGGTCTGGTATAGATAATCGCGGGTTGTTCG
ACTGATTTACCGCGTCGCACATCAGATCTTAGGTACTGTTCCTCGAAAGG
ATGAGCAGTTCTTCTCAGAATGCGTTTGACGCTGTAGGACAGGCCTACAA
TGACAACATATCTGGTCGCGGTACACAATAAAAAAAGGCGTGGTGTACAG
AACTTTACAATGTCATTCTCCAATTTCGAAGTCCGTGTCGTCTGCCTTCG
GAAACCTCAGGTAAAATTCTGGGAAGGAGGCGATCCGCCGCCGTGTTTCA
ACATCGACGGGGTGAACTATGTTTATGTGCGCAAGAACGGGCTTTTGTTC
GCTGTTTCTTCGCAGTGGAATGTGTCTCCGAGCATGTTTTTGGAGCTACT
TAATCGGCTTGCCAAGGTTTTCAAGGACTACTGCGGCGTTCTGTCCGAGG
TACACAGACACTCTTGGGAGAAGTCGTTATTTTGTCATATTGATTTCAAT
ATTAATGGTAACATCGCAATAACGAACGTCTGGCTGCGTGGTCTATCTAA
CGTACGATACAGTATGATACTTGCTGATTTACGTCAGGTTGGTAGGCTGG
TTATCGGTGTACAAGCTCTCCGTACTGGGACACGAACAAACTCAGGTGGC
TATGCGTGACCCCCCTCTGGACCACCCTGACGGATTAAAAAACTTGTATT
TTTTAAACCTTTGTCAGAGCTTTATAGATCAACACTGGAGGAGTTCGCTG
TAGGATCGACGGGCGGTGCAGCTGGGCGCTGCTGCATGTTGCATTCGCAA
AGACGCAGTTGACAGTACAAAAGCGTTCTTGATGGTCTTGCGGTTCCGTG
TGACGGCTGCTCTCCGCAACATCCGGTTCTTCGCAAATGGGGACATTTCT
TTAGCTTTACTCCGTCCCAGAGCAGTGCCCTCAGCAATCACCGCCACCGA
AATTTGTGTGTGTGCTCCACACTACGCCCCAGAACAAGGCATCAACTTCA
TTCCTTAGTGCGGACATACTGCTATTAATAGGCGTCGCTGGTAGTCGACT
TCGCAATTTTGGTATGCGAGTAACTGCATAACAGTAAAGACAAATTCACC
GCCGATCCTCGTTTCGTCCTGCACCATGAAGCCATAACTTGGGCTTAGGC
CCCTGGTATTGTTTTTCCGATACCGTTCGTAACCTTACCTCGTACCTCGG
CGCTAAGAAATTCTATGTTATCCGTACGCGTAACCATAGTACACGGTGAA
CTGATCGTGCGATATTTTACAATCGCGAGGGCAGGAAGCGATCCGCAAGA
ATTTCATCCTGGTATACGAGCTGCTGGACGAAACACTGGACTACGGATAC
CCCCAGGGAACCAGTACGGAGACCCTGAGGAATCATGTCCGAAATGAACC
GATATTGGTGGATTCCGTGAAGTCATTGAGGCTGCCAGCGGTGAGAATCG
TCCAATAAAAAAAAAACAGAGGAAACTTGGCGTGGCAGTTGTCTTCTACA
TTTTCAATGAAACCACTCGCATTGCATTGTACTTAACTTAGCGGAGTGTT
CGTGATGATTCGTGTGTCACTTTGCCGATTGCAGGATGGCTGTTCAAGCA
ATGGATTTCTCCCTGGCATGTCGCATACACGTAGAGGCCAGCGAATTGCT
GGACCAGACTCACTGCTGTTTTTTTATTGGCCTTGCCCCCAACCAGTGAT
TTGTTTGCGGCATTTTGAGATCCAATTTACTGTTGTGCTCATCTCTTGAC
AACAGTCTCTCAAGACCAAGACAGCTCCGTCGTCGTCTGTGCAAAAGCCA
GTGTCGGGTGGCAATCAAAAGAGCGGGACGCAGAGAAATGAGATCTTCGT
GGACATCCTCGAGAGGTACATGGAGTGCGCGCATTTGTATAGAAGCGATC
CCTTGACAGCGCGTACAAACTTGTTGTGTGGTTCTCGCTCACAAACTCGG
TGCATTGCAGATAGGCAATAGGGTGTTTGCCCCAGCGAACGGTATCTGTT
TGTGAAATTCGATTTGGTCCTGAACGACTCACAGTGAGCCGACAGTGAGC
TGCAAGTCCCGGACCCAAGTGCACCTGCACCAACGCTGCGCTACAACACG
ATTTCCTCCTCGAAATTCAAAAGTTCGGCGAGTTTTAAGGGTTCTGATAG
GTTTTGACTGGGACTTCGTTTTGTAGCAAGACGTGGGTCCAGGTGAAACA
GATATTTGCTGACGCAAACTTTCTCATGCAGTCAATCGTATTTACCCTGT
TTTGCCGCTGGCTGTCTCGTTGGGCTGCTATACTCTTGGTTCATGGTTCA
CACGCCGTTGTGCCTCGACTTGAGAAGAGTCGAAGTCCAACTCTAACCTT
AACTTCAATGCCAACCCAACTCACAAACCGGAGCGTGCCTTGTCAGGGCG
CCAACAGAAGCCGTGCTGCCGATGTCTTGCCAAAACTGAATCTCGTCAAG
AAAACATGCCCAACAATAGTCTGAAACAGGGGGTGAAGTCTACGGAGTCC
ATTGCAGCTATGCCTAATCCCAGTGATTGTGTAGGCTAGAATTTACATTT
GGTTGTTTACACATCCCCTGCCTGAGTATTCGCTTTTAGTTTTTCAACAT
GTGCAATGCACTACACAACTAGATGGCACAAGCTAACGAAAAAGTATGAA
ATGGTTTTCCTCGCCGCACAGGTTCTAAGGGGCATGCTCCGTATCCGGGC
GGAAATATGAACCACAATACGTCCTCACCACCACTAACCAACCATAGAAC
CTCGTCAGAATGCCTCCTTGAACATTGCTGCAGCACGTTATTAAAAGAAA
TGGCACGCGATTTGATCCTCACAACATTCCTCTGTGTTTGGCTGTTTATA
ACAATCGGCAGGTTGAACGTGCTATTTAGTCAGAGTGGGCAGGTGGTCAA
CAGCTCAATCGACGGCTGCATACAGATGAAGAGCTACCTGAGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2889:239..4884-

>mRNA_H-paniculata_contig2889.7874.1 ID=mRNA_H-paniculata_contig2889.7874.1|Name=mRNA_H-paniculata_contig2889.7874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig2889:239..4884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAATCGCACCCATCTCCCAGTTCTTCATCCTCTCGCCAAGGGGAGA
CACCATTATATCTAAGGACTACCGGGGGAATGTTGTGGCGGGAACGACTG
ACACTTTCTTTCGCAAGATGTCAATCGCACCCATCTCCCAGTTCTTCATC
CTCTCGCCAAGGGGAGACACCATTATATCTAAGGACTACCGGGGGAATGT
TGTGGCGGGAACGACTGACACTTTCTTTCGCAAGGTAAAATTCTGGGAAG
GAGGCGATCCGCCGCCGTGTTTCAACATCGACGGGGTGAACTATGTTTAT
GTGCGCAAGAACGGGCTTTTGTTCGCTGTTTCTTCGCAGTGGAATGTGTC
TCCGAGCATGTTTTTGGAGCTACTTAATCGGCTTGCCAAGGTTTTCAAGG
ACTACTGCGGCGTTCTGTCCGAGGTAAAATTCTGGGAAGGAGGCGATCCG
CCGCCGTGTTTCAACATCGACGGGGTGAACTATGTTTATGTGCGCAAGAA
CGGGCTTTTGTTCGCTGTTTCTTCGCAGTGGAATGTGTCTCCGAGCATGT
TTTTGGAGCTACTTAATCGGCTTGCCAAGGTTTTCAAGGACTACTGCGGC
GTTCTGTCCGAGGAAGCGATCCGCAAGAATTTCATCCTGGTATACGAGCT
GCTGGACGAAACACTGGACTACGGATACCCCCAGGGAACCAGTACGGAGA
CCCTGAGGAATCATGTCCGAAATGAACCGATATTGGTGGATTCCGTGAAG
TCATTGAGGCTGCCAGCGGAAGCGATCCGCAAGAATTTCATCCTGGTATA
CGAGCTGCTGGACGAAACACTGGACTACGGATACCCCCAGGGAACCAGTA
CGGAGACCCTGAGGAATCATGTCCGAAATGAACCGATATTGGTGGATTCC
GTGAAGTCATTGAGGCTGCCAGCGTCTCTCAAGACCAAGACAGCTCCGTC
GTCGTCTGTGCAAAAGCCAGTGTCGGGTGGCAATCAAAAGAGCGGGACGC
AGAGAAATGAGATCTTCGTGGACATCCTCGAGAGTCTCTCAAGACCAAGA
CAGCTCCGTCGTCGTCTGTGCAAAAGCCAGTGTCGGGTGGCAATCAAAAG
AGCGGGACGCAGAGAAATGAGATCTTCGTGGACATCCTCGAGAGGTTGAA
CGTGCTATTTAGTCAGAGTGGGCAGGTGGTCAACAGCTCAATCGACGGCT
GCATACAGATGAAGAGCTACCTGAGTGGTGTTGAACGTGCTATTTAGTCA
GAGTGGGCAGGTGGTCAACAGCTCAATCGACGGCTGCATACAGATGAAGA
GCTACCTGAGTGGT
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