prot_H-paniculata_contig28878.7872.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28878.7872.1
Unique Nameprot_H-paniculata_contig28878.7872.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length138
Homology
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.460e-30
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0
Query:    2 VIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            ++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +++YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:    1 MLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERSIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 126          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.800e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:  424 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 550          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.810e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:  494 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 620          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.860e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:  633 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 759          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.900e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:  833 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 959          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.940e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct: 1212 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 1338          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.950e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct: 1232 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 1358          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.960e-28
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct: 1375 LMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 1501          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.930e-27
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEFQT 128
            +++AVA E    +   DVK  +    LD E+F++LP GCGDKS ++V+  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ ++ DD++VAG + +C+ L A+L  +F T
Sbjct:  266 LMLAVANEKGMNLNHWDVKLAYTHATLDEEIFLRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPT 392          
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.250e-27
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLNKAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILCVHEDDVIVAGKNVECDALFAALRAEF 126
            +++ VA E        DVKQ +    LD EVF+KLP GCGDKS +I +  +A+YGL+QSGR W     + LV N    Q K+DPCVFR   + VV MI+ +H DD++VAG + +C+ L A+    F
Sbjct:  403 LMLPVANEKGMNHHHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRF 527          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28878.7872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J9_9PHAE2.460e-3044.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.800e-2845.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE2.810e-2845.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE2.860e-2845.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.900e-2845.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.940e-2845.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.950e-2845.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.960e-2845.31Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KMJ1_9PHAE1.930e-2742.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE6.250e-2744.44Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..126
e-value: 3.9E-19
score: 69.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28878contigH-paniculata_contig28878:142..555 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28878.7872.1mRNA_H-paniculata_contig28878.7872.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28878 1..1312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28878.7872.1 ID=prot_H-paniculata_contig28878.7872.1|Name=mRNA_H-paniculata_contig28878.7872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MVIAVAVENDWGMWKLDVKQDFIRVNLDFEVFMKLPEGCGDKSGRIVRLN
KAMYGLEQSGRMWSKRLVEVLVNNVSMTQSKSDPCVFRLEKNGVVHMILC
VHEDDVIVAGKNVECDALFAALRAEFQTTRGEQFGVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2