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Homology
BLAST of mRNA_H-paniculata_contig2887.7871.1 vs. uniprot
Match: D7FZU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU3_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.470e-9 Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 2
Query: 323 RKKPQWDDSLRDQSQYKLTPEEAVQRKMALVSKHNTLAFGLG 448
RK+P+WDDSL+D SQY+LTPEEA++RK+ALVSKHNTL FGLG
Sbjct: 197 RKRPEWDDSLKDPSQYRLTPEEALRRKVALVSKHNTLVFGLG 238
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 3792 |
| Cds size | 2382 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2887.7871.1 >prot_H-paniculata_contig2887.7871.1 ID=prot_H-paniculata_contig2887.7871.1|Name=mRNA_H-paniculata_contig2887.7871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=794bp
MALVSKHNTLAFGLGNGRAANSKRLPGARVVVDKRVKPAASVAAAEGGGG KKRSSRRVGAKDQVLKDRGSKKKSDGSNDSVHAGGSGGGAAGVIRSTKDQ GMSLHSLVGVSDIDAVDEETLWLEEHSGLSGGGGGFGGDVSVNGMTPPTT YRYRHHDTAVATAAAERGDSEGALADSDHNLIDLSGIEFGIEAFSQRVSR LEIDRKSVRSEYGDSDEEKDKHEEETEQEVEEMEPTAAAAVTTKEPITDQ ASSDYPRNFDARELGQTSNSQHTCRENVGFGSDGDSVCRNCRGNLRALSP SGKDGDLVKRIRLLEAQVRALPLVATASELSNEEASGVGGTESTECGRQE TERDGASAGNAGERQVENRILQAHTIVEWRTVMAGLISLSAGLLQRATAA ESRLRDVAHAEGANGTAFEKPTGSGTGRSPVPPEDEEVELLMARAKFMTK EGKTGEEKGKRIGSYASQLAGDLEDTTSASSAVISSTIAETPASTNPNII PLLDNYRREERRDGRETPAPGARDSSHGQGRQRPRPLEGLPPASAVPATD HWREALDAVSTLVASPPVSEKAAPIVSRARNDFQPIHTFGGDGDGDGDDG HDFGSSYFDRVALRHARPLPRAVLAPMHHSVVSAARENSSHARRGPDNAT EKTRTRGLPAIEKARVSSAAAAAGSDGAAALEWGYTTPRSIEAIPPTLPT PSQKPKHPFEQHGRVGGRQSMPPAPVHHRRRLRQSNHHQQPGTSAAEASG LVSPRSLSFHSGGSGSEGRRESDGELSSFAAPVGEWYTPPPRW* back to topmRNA from alignment at H-paniculata_contig2887:12157..16437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2887.7871.1 ID=mRNA_H-paniculata_contig2887.7871.1|Name=mRNA_H-paniculata_contig2887.7871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4281bp|location=Sequence derived from alignment at H-paniculata_contig2887:12157..16437+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AAGCACAGTGGCATGCAGCACCGCCAGTCATCACTATTCAGGGCGCGATT
GCGGCGCCCGGCGGGACGGCTAACTGCCTTGGTCAAACACGAGAAGGATA
AAGGCGCGGTCTATGGGGGGACAGGGGTGGCGTCTTCCTCCGTGAAGAAG
AGCGTGTTGTCGGAGTCGAAGGGCGTGTTGGAGTTGTATACTCTGCTGAA
TAGTGTGATTGGTATTAGTAACAGCAGTAGTGCAAATACAGTATCATGCT
GTGATGAATAGGTGTAGCACAATTACGATGCGGAGAAAACAAAAGGAAGT
TCGTCGCATGCCGTTACATTTCCAGAATTATGGATAGTCCTCACAATAAC
GATCAAAGAATAATCGGGATGTCCGAGTCTTCGCATGTTTAAGAGATGTT
GTTCCATATGTTTATAGATCAATGAAGGAAAGCCCCACCTTGCCCACTTC
CATTATCCAACCGATCAAGCCAAGGTTTCTAGCCTGTGAGTTCAGTAGAC
GGATCACTGCAACAGCAGAGGTTATTACCAGAGAGGGAAAGACGAGACTA
ATCTGGTAAGAAAAAGAAAGAAGATCTTGTTTCAGCGCACGCCTAGACTC
CGAGGAAGAGAGTCTAAAGGGGAAGCCGTGCCAACTATAAAAAGCGAACA
ACATCGAACAGGGCGGTACGGGTGGGCGAAATTCCGGTAGGGAAGGCAGA
GCGGGCGGCGTCAGGTCACGGTCCGCAGGTGCCGCTTATATCGCGGGAAC
CGATGCTGCTTCGACCGCCGAGGCCCGTGACGCAAGTATCAGAAGGGGCT
CGGCGCGGAGGAGGAAGAAGCCGCAATGGGACGATAGCCTGCGGGACCAG
TCACAGTACAAGCTTACGCCAGAAGAGGCCGTCCAGCGCAAGATGGCTCT
AGTTTCGAAGCACAACACCCTGGCGTTCGGGCTCGGGAATGGTCGCGCTG
CTAACAGCAAGCGTCTCCCGGGTGCGCGTGTTGTGGTAGACAAAAGGGTG
AAGCCGGCGGCGTCGGTGGCGGCAGCTGAAGGAGGGGGGGGAAAGAAGCG
TTCGTCGAGGAGAGTAGGTGCAAAGGACCAGGTGTTGAAGGACCGTGGCA
GCAAAAAGAAGAGTGATGGTAGCAACGACAGTGTTCATGCTGGCGGCAGC
GGTGGCGGTGCAGCCGGCGTGATCAGGAGCACCAAAGATCAGGGTATGTC
GCTGCACTCGCTCGTGGGAGTGTCTGATATTGATGCCGTGGACGAGGAGA
CACTGTGGTTGGAGGAACACTCGGGGCTCAGCGGCGGCGGCGGCGGCTTC
GGCGGTGACGTGAGTGTCAACGGCATGACCCCACCAACAACGTACAGGTA
CAGGCATCACGACACCGCAGTTGCAACAGCGGCCGCTGAGCGTGGCGACA
GCGAGGGTGCCCTTGCTGACAGTGACCACAACTTGATCGATCTGAGCGGA
ATCGAATTCGGCATAGAGGCCTTCAGCCAGCGTGTTTCCCGCCTCGAGAT
AGATCGGAAGTCGGTTCGTAGCGAGTACGGGGATAGTGATGAGGAGAAAG
ATAAGCATGAGGAGGAAACGGAGCAAGAGGTGGAAGAGATGGAGCCTACG
GCCGCGGCGGCGGTGACCACGAAGGAGCCCATCACAGATCAGGCATCTTC
AGATTATCCCAGAAATTTCGACGCACGCGAGCTCGGGCAGACCTCTAACA
GCCAACACACATGTAGAGAAAACGTCGGCTTCGGCAGCGACGGCGATAGT
GTCTGCCGGAATTGCCGCGGTAACCTTCGAGCGTTGTCGCCATCTGGTAA
GGACGGAGATTTGGTCAAGCGGATCCGGTTGCTGGAGGCGCAGGTGCGAG
CGCTGCCTTTAGTCGCGACGGCCTCGGAATTATCTAACGAGGAGGCAAGT
GGCGTCGGCGGGACTGAGTCAACCGAATGCGGAAGACAAGAGACAGAGAG
AGATGGTGCATCGGCAGGAAACGCCGGCGAGCGACAAGTGGAGAATCGAA
TACTGCAAGCGCACACTATCGTGGAATGGCGCACTGTTATGGCGGGCCTT
ATCTCGTTGAGTGCGGGGCTTCTGCAGCGCGCGACTGCCGCTGAAAGTCG
GCTGCGGGACGTTGCCCACGCCGAGGGTGCAAACGGTACCGCATTTGAAA
AACCGACTGGTTCCGGCACAGGACGTTCCCCGGTTCCACCCGAGGACGAA
GAAGTTGAGTTGCTGATGGCAAGGGCAAAATTCATGACGAAGGAAGGGAA
AACGGGAGAAGAAAAGGGGAAACGCATTGGATCGTATGCTAGTCAACTTG
CCGGCGACCTTGAGGACACCACCAGCGCGAGCTCGGCCGTGATTTCGAGC
ACAATCGCGGAAACGCCAGCGTCAACAAACCCGAACATCATCCCTTTGCT
AGACAACTATCGGCGAGAAGAACGACGCGACGGCCGTGAGACACCTGCTC
CGGGCGCTCGCGACAGCAGCCACGGACAGGGACGGCAGCGGCCTCGACCG
CTGGAGGGTCTACCTCCAGCTTCCGCCGTTCCGGCCACGGACCACTGGCG
TGAAGCCCTGGACGCGGTCAGTACTCTTGTGGCGAGCCCTCCTGTGAGTG
AAAAGGCGGCGCCGATCGTCTCGCGCGCGAGAAATGATTTCCAGCCGATC
CACACTTTCGGGGGCGACGGTGACGGTGACGGCGACGATGGGCACGATTT
TGGCAGTTCTTATTTCGACCGCGTTGCCCTGCGCCACGCCCGGCCGCTAC
CGCGGGCCGTTCTCGCTCCTATGCACCATTCTGTGGTGTCGGCTGCGCGA
GAGAATTCGAGCCATGCTAGGCGCGGCCCCGACAATGCCACCGAAAAAAC
TCGTACCCGCGGCTTGCCCGCTATCGAAAAGGCGCGTGTTTCGTCGGCAG
CGGCGGCGGCGGGATCGGACGGTGCGGCTGCACTGGAGTGGGGTTATACC
ACGCCCCGCTCTATTGAAGCAATTCCCCCAACACTGCCGACACCATCCCA
GAAACCAAAGCACCCTTTTGAGCAGCACGGTCGTGTCGGGGGGCGACAGT
CGATGCCCCCGGCGCCAGTGCATCACAGGCGGAGATTGCGTCAGTCGAAT
CATCATCAGCAGCCTGGCACAAGTGCGGCTGAAGCGAGCGGACTTGTTTC
CCCGCGTTCGCTTTCTTTCCATAGCGGCGGCAGCGGCAGCGAAGGCAGAC
GAGAGAGTGATGGCGAGCTTTCGAGTTTTGCCGCGCCCGTGGGAGAGTGG
TACACGCCGCCTCCGCGATGGTAGACCTTGCTTAGTCGATCTGTGCGTGT
ACCTGAGTAGGTGCAAGGTGAAGCTCTTTGGAAAGTTGTGTGCGCGGTTA
GGGGTGGTTACACACGCGGAGCGTTATATTAATTGCCGCAAGACAGCCAG
GCGCGTTGATATCCGCTTAACAGTGTGTTATCGTATGCGACCTATGAGTG
GTTGGTGGCGTAAAAGCTTCTTCGCCGCGCTCTTATATTGGTGAAATGTT
TAGAGTATTGATTGGTTTGTTGAGTGAGGCCTGCGAGGAGTGTATGTAGG
ATGTTGTTAAATGTATGTGTCGAACGTACACAAACATGCACACAAGGGCC
AGGTGACAGACGTACGCGGTAATTGTTGAACGATTATCATCGCGCGCGTC
CGAATGCGGGATGTGCAGGCGTTTCTTTCATTAGTTGTAATATATTTATG
TATACCTGGGCAACGCGATGGAGAGAGAGAGAGGGAAAATATGCGCGCAG
CGTTCCTATTGGCCAACTTTATCGGACAGAGTAATCTGATTGGTGGATAA
AAGCCTTTGGGTTGACGATTAACGTCATTGATGATCATGGGATCATTTTC
GGAGCGGAGTAATTACTTGACATGGACAGCGCATGGTGGGTGCTCCCAAT
GAGCCACTTGACCAAACGCAAGTGTCGTGACATATTGGCGTGTTTCTATT
TCCAATTAAATGTGCATGTATGACGTGGCTGATCTCTAGTGTATGGTAAT
TTGTAGAGGAAAGCAGATCGGATGTCGCAGGTATATCGTGTGGCGTGTAA
TTTTAGCCACAAACCCATTTTTTTTGTGAGGTGCTGCGCGTCGCAGTCAA
GTTTCAACATCAGGTAATACAGTTGAACAAGCCTCCGGCGTATCGCGGTC
AGTCGGCACGCGTGACTACAAGCAAGCCGGTTCCTTAAAGGGGAGATAGA
TTTTAAGATTGATGGTTCACAAAGCATTTATTATTTGCTCCATCCTTCCT
GCAAGACGTGAAAGAAAAAATGTAAAACTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2887:12157..16437+ >mRNA_H-paniculata_contig2887.7871.1 ID=mRNA_H-paniculata_contig2887.7871.1|Name=mRNA_H-paniculata_contig2887.7871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4764bp|location=Sequence derived from alignment at H-paniculata_contig2887:12157..16437+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCTCTAGTTTCGAAGCACAACACCCTGGCGTTCGGGCTCGGGAATGG TCGCGCTGCTAACAGCAAGCGTCTCCCGGGTGCGCGTGTTGTGGTAGACA AAAGGGTGAAGCCGGCGGCGTCGGTGGCGGCAGCTGAAGGAGGGGGGGGA AAGAAGCGTTCGTCGAGGAGAGTAGGTGCAAAGGACCAGGTGTTGAAGGA CCGTGGCAGCAAAAAGAAGAGTGATGGTAGCAACGACAGTGTTCATGCTG GCGGCAGCGGTGGCGGTGCAGCCGGCGTGATCAGGAGCACCAAAGATCAG GGTATGTCGCTGCACTCGCTCGTGGGAGTGTCTGATATTGATGCCGTGGA CGAGGAGACACTGTGGTTGGAGGAACACTCGGGGCTCAGCGGCGGCGGCG GCGGCTTCGGCGGTGACGTGAGTGTCAACGGCATGACCCCACCAACAACG TACAGGTACAGGCATCACGACACCGCAGTTGCAACAGCGGCCGCTGAGCG TGGCGACAGCGAGGGTGCCCTTGCTGACAGTGACCACAACTTGATCGATC TGAGCGGAATCGAATTCGGCATAGAGGCCTTCAGCCAGCGTGTTTCCCGC CTCGAGATAGATCGGAAGTCGGTTCGTAGCGAGTACGGGGATAGTGATGA GGAGAAAGATAAGCATGAGGAGGAAACGGAGCAAGAGGTGGAAGAGATGG AGCCTACGGCCGCGGCGGCGGTGACCACGAAGGAGCCCATCACAGATCAG GCATCTTCAGATTATCCCAGAAATTTCGACGCACGCGAGCTCGGGCAGAC CTCTAACAGCCAACACACATGTAGAGAAAACGTCGGCTTCGGCAGCGACG GCGATAGTGTCTGCCGGAATTGCCGCGGTAACCTTCGAGCGTTGTCGCCA TCTGGTAAGGACGGAGATTTGGTCAAGCGGATCCGGTTGCTGGAGGCGCA GGTGCGAGCGCTGCCTTTAGTCGCGACGGCCTCGGAATTATCTAACGAGG AGGCAAGTGGCGTCGGCGGGACTGAGTCAACCGAATGCGGAAGACAAGAG ACAGAGAGAGATGGTGCATCGGCAGGAAACGCCGGCGAGCGACAAGTGGA GAATCGAATACTGCAAGCGCACACTATCGTGGAATGGCGCACTGTTATGG CGGGCCTTATCTCGTTGAGTGCGGGGCTTCTGCAGCGCGCGACTGCCGCT GAAAGTCGGCTGCGGGACGTTGCCCACGCCGAGGGTGCAAACGGTACCGC ATTTGAAAAACCGACTGGTTCCGGCACAGGACGTTCCCCGGTTCCACCCG AGGACGAAGAAGTTGAGTTGCTGATGGCAAGGGCAAAATTCATGACGAAG GAAGGGAAAACGGGAGAAGAAAAGGGGAAACGCATTGGATCGTATGCTAG TCAACTTGCCGGCGACCTTGAGGACACCACCAGCGCGAGCTCGGCCGTGA TTTCGAGCACAATCGCGGAAACGCCAGCGTCAACAAACCCGAACATCATC CCTTTGCTAGACAACTATCGGCGAGAAGAACGACGCGACGGCCGTGAGAC ACCTGCTCCGGGCGCTCGCGACAGCAGCCACGGACAGGGACGGCAGCGGC CTCGACCGCTGGAGGGTCTACCTCCAGCTTCCGCCGTTCCGGCCACGGAC CACTGGCGTGAAGCCCTGGACGCGGTCAGTACTCTTGTGGCGAGCCCTCC TGTGAGTGAAAAGGCGGCGCCGATCGTCTCGCGCGCGAGAAATGATTTCC AGCCGATCCACACTTTCGGGGGCGACGGTGACGGTGACGGCGACGATGGG CACGATTTTGGCAGTTCTTATTTCGACCGCGTTGCCCTGCGCCACGCCCG GCCGCTACCGCGGGCCGTTCTCGCTCCTATGCACCATTCTGTGGTGTCGG CTGCGCGAGAGAATTCGAGCCATGCTAGGCGCGGCCCCGACAATGCCACC GAAAAAACTCGTACCCGCGGCTTGCCCGCTATCGAAAAGGCGCGTGTTTC GTCGGCAGCGGCGGCGGCGGGATCGGACGGTGCGGCTGCACTGGAGTGGG GTTATACCACGCCCCGCTCTATTGAAGCAATTCCCCCAACACTGCCGACA CCATCCCAGAAACCAAAGCACCCTTTTGAGCAGCACGGTCGTGTCGGGGG GCGACAGTCGATGCCCCCGGCGCCAGTGCATCACAGGCGGAGATTGCGTC AGTCGAATCATCATCAGCAGCCTGGCACAAGTGCGGCTGAAGCGAGCGGA CTTGTTTCCCCGCGTTCGCTTTCTTTCCATAGCGGCGGCAGCGGCAGCGA AGGCAGACGAGAGAGTGATGGCGAGCTTTCGAGTTTTGCCGCGCCCGTGG GAGAGTGGTACACGCCGCCTCCGCGATGGTAGATGGCTCTAGTTTCGAAG CACAACACCCTGGCGTTCGGGCTCGGGAATGGTCGCGCTGCTAACAGCAA GCGTCTCCCGGGTGCGCGTGTTGTGGTAGACAAAAGGGTGAAGCCGGCGG CGTCGGTGGCGGCAGCTGAAGGAGGGGGGGGAAAGAAGCGTTCGTCGAGG AGAGTAGGTGCAAAGGACCAGGTGTTGAAGGACCGTGGCAGCAAAAAGAA GAGTGATGGTAGCAACGACAGTGTTCATGCTGGCGGCAGCGGTGGCGGTG CAGCCGGCGTGATCAGGAGCACCAAAGATCAGGGTATGTCGCTGCACTCG CTCGTGGGAGTGTCTGATATTGATGCCGTGGACGAGGAGACACTGTGGTT GGAGGAACACTCGGGGCTCAGCGGCGGCGGCGGCGGCTTCGGCGGTGACG TGAGTGTCAACGGCATGACCCCACCAACAACGTACAGGTACAGGCATCAC GACACCGCAGTTGCAACAGCGGCCGCTGAGCGTGGCGACAGCGAGGGTGC CCTTGCTGACAGTGACCACAACTTGATCGATCTGAGCGGAATCGAATTCG GCATAGAGGCCTTCAGCCAGCGTGTTTCCCGCCTCGAGATAGATCGGAAG TCGGTTCGTAGCGAGTACGGGGATAGTGATGAGGAGAAAGATAAGCATGA GGAGGAAACGGAGCAAGAGGTGGAAGAGATGGAGCCTACGGCCGCGGCGG CGGTGACCACGAAGGAGCCCATCACAGATCAGGCATCTTCAGATTATCCC AGAAATTTCGACGCACGCGAGCTCGGGCAGACCTCTAACAGCCAACACAC ATGTAGAGAAAACGTCGGCTTCGGCAGCGACGGCGATAGTGTCTGCCGGA ATTGCCGCGGTAACCTTCGAGCGTTGTCGCCATCTGGTAAGGACGGAGAT TTGGTCAAGCGGATCCGGTTGCTGGAGGCGCAGGTGCGAGCGCTGCCTTT AGTCGCGACGGCCTCGGAATTATCTAACGAGGAGGCAAGTGGCGTCGGCG GGACTGAGTCAACCGAATGCGGAAGACAAGAGACAGAGAGAGATGGTGCA TCGGCAGGAAACGCCGGCGAGCGACAAGTGGAGAATCGAATACTGCAAGC GCACACTATCGTGGAATGGCGCACTGTTATGGCGGGCCTTATCTCGTTGA GTGCGGGGCTTCTGCAGCGCGCGACTGCCGCTGAAAGTCGGCTGCGGGAC GTTGCCCACGCCGAGGGTGCAAACGGTACCGCATTTGAAAAACCGACTGG TTCCGGCACAGGACGTTCCCCGGTTCCACCCGAGGACGAAGAAGTTGAGT TGCTGATGGCAAGGGCAAAATTCATGACGAAGGAAGGGAAAACGGGAGAA GAAAAGGGGAAACGCATTGGATCGTATGCTAGTCAACTTGCCGGCGACCT TGAGGACACCACCAGCGCGAGCTCGGCCGTGATTTCGAGCACAATCGCGG AAACGCCAGCGTCAACAAACCCGAACATCATCCCTTTGCTAGACAACTAT CGGCGAGAAGAACGACGCGACGGCCGTGAGACACCTGCTCCGGGCGCTCG CGACAGCAGCCACGGACAGGGACGGCAGCGGCCTCGACCGCTGGAGGGTC TACCTCCAGCTTCCGCCGTTCCGGCCACGGACCACTGGCGTGAAGCCCTG GACGCGGTCAGTACTCTTGTGGCGAGCCCTCCTGTGAGTGAAAAGGCGGC GCCGATCGTCTCGCGCGCGAGAAATGATTTCCAGCCGATCCACACTTTCG GGGGCGACGGTGACGGTGACGGCGACGATGGGCACGATTTTGGCAGTTCT TATTTCGACCGCGTTGCCCTGCGCCACGCCCGGCCGCTACCGCGGGCCGT TCTCGCTCCTATGCACCATTCTGTGGTGTCGGCTGCGCGAGAGAATTCGA GCCATGCTAGGCGCGGCCCCGACAATGCCACCGAAAAAACTCGTACCCGC GGCTTGCCCGCTATCGAAAAGGCGCGTGTTTCGTCGGCAGCGGCGGCGGC GGGATCGGACGGTGCGGCTGCACTGGAGTGGGGTTATACCACGCCCCGCT CTATTGAAGCAATTCCCCCAACACTGCCGACACCATCCCAGAAACCAAAG CACCCTTTTGAGCAGCACGGTCGTGTCGGGGGGCGACAGTCGATGCCCCC GGCGCCAGTGCATCACAGGCGGAGATTGCGTCAGTCGAATCATCATCAGC AGCCTGGCACAAGTGCGGCTGAAGCGAGCGGACTTGTTTCCCCGCGTTCG CTTTCTTTCCATAGCGGCGGCAGCGGCAGCGAAGGCAGACGAGAGAGTGA TGGCGAGCTTTCGAGTTTTGCCGCGCCCGTGGGAGAGTGGTACACGCCGC CTCCGCGATGGTAG back to top
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