mRNA_H-paniculata_contig28854.7867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28854.7867.1
Unique NamemRNA_H-paniculata_contig28854.7867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28854.7867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28854contigH-paniculata_contig28854:760..2807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28854.7867.1prot_H-paniculata_contig28854.7867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28854 760..2805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.7287557-CDS-H-paniculata_contig28854:759..10881622929878.7287557-CDS-H-paniculata_contig28854:759..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28854 760..1088 -
1691481051.713012-CDS-H-paniculata_contig28854:759..10881691481051.713012-CDS-H-paniculata_contig28854:759..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28854 760..1088 -
1622929878.7415168-CDS-H-paniculata_contig28854:2699..28051622929878.7415168-CDS-H-paniculata_contig28854:2699..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28854 2700..2805 -
1691481051.7275836-CDS-H-paniculata_contig28854:2699..28051691481051.7275836-CDS-H-paniculata_contig28854:2699..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28854 2700..2805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.7530117-UTR-H-paniculata_contig28854:2805..28071622929878.7530117-UTR-H-paniculata_contig28854:2805..2807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28854 2806..2807 -
1691481051.737272-UTR-H-paniculata_contig28854:2805..28071691481051.737272-UTR-H-paniculata_contig28854:2805..2807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28854 2806..2807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28854.7867.1

>prot_H-paniculata_contig28854.7867.1 ID=prot_H-paniculata_contig28854.7867.1|Name=mRNA_H-paniculata_contig28854.7867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MGSAERRRLYSRGGGGGSSSPMRTPGGGRSKSPFSGGRIGSPFSTTSGYR
GSPGSGSRNRTESPAPTSRAFSALDMMPSLVSGGSAGGDGSSDDDVDDND
DDYHTHHNSMMSSSGGGGGGGGGGSGSGRRGLENDFDDDSSVGRG
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mRNA from alignment at H-paniculata_contig28854:760..2807-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28854.7867.1 ID=mRNA_H-paniculata_contig28854.7867.1|Name=mRNA_H-paniculata_contig28854.7867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-paniculata_contig28854:760..2807- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGGGTCTGCGGAACGCAGAAGGCTTTACTCCAGGGGAGGGGGCGGG
GGCTCGTCGTCCCCGATGAGGACCCCTGGGGGGGGCAGAAGCAAGTCGCC
ATTTTCTGGTGAGTTTTTATTTTTATTTTTTATGGCGCGAAATTGTTATT
GAAAAGTCGATGGTTGTGTTCGTCGAGGGGTCGCCAAGGAAAGGTAATTG
TAGATGTAGAAGGGCTGTTTGTTAGTTTATTCGCAACTCAAATGTTGAGT
GACTTAGGGCGTGTCACATCGTACCAATATACCGATTCTCCAAAACAATG
ATTCTTGAATTACCGCCTTTGATTGGTTGAGCGATAATACCACCCACCCT
AAAGACATGTACAAAAAAATACAGTAGATATCGTTTTTGAGAAAGTCTTT
TGGATTTTTCAAAACCGTTTTTGGCGTAAACGTACGTGTGCAAACGAATC
CATACCGGAAGATAAATAGCGACAAGGGTGGTAGCAGTACAAACTTGATA
CGGGACTGTCGAACTGCCGGCCGCGGCTGTGACAGCTCTACTGTCCTCGG
TAGAAGAGAATGTAGCTCGGACCGTAACTTTTAATCGACTGAGCAACGTG
TATGTGGTTTGGGTCGAATACCTGCAAAGGTGAAGGAGAACCGATGTTTT
TTTTTAACCCCGGAAGACTGAGGCAAAACCTTTACCGATGCTTCCACACT
CAAAGTATTTCTACCGAAGTATGTCTACATTTCCTTTAACAAAACAGAGT
TATTTATTCCTCTGCAGGGTAGGCGCCACCCCGGTTCGGCCGAACTAAGT
AGGCAGTGTGGTGGTTGCACCCACTAAAAGACCTCTGACTAGACTCCCAG
TCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGCGTAGGTCTGTGGA
GAACCGATGTTTTCCGGCGTTCGTGGCAAGCCAGGCGGACAGAAGAGGTG
CCAAACAGGGCACAATTTGCACTCTTGAGTTTACATGGTTTATCGTGGCT
CTTTGAAATACTGAATCGAGTTGCTTCAAACAAATAAAGCCTGTTGTATG
TAGCCGAGCAACTTACGGATTTGAAGGTTGTGGTGCGCGTGTACTGGGGT
TCTCGGTGCATGGTTAGGGATCTCTGGGGTACACATTGTTGTGTTTTTGC
ACCCTGTTGGAACTAACGGCCAAACAAGAAAACTTTCTCCAAGACTCGAA
GCCTGTATTTAGTGCAACTCCGGTTTTCTCTGTTTTTTCGTTAGGACACT
TTTTCTTTTTTTTTTTCCCGATAAAACATGCCCTCAGGCGAAATAATTGA
ACAGCACGAGAGACATGTGTGTACGCAAACGATGATATTTTTAACGAGTA
AAGGAATTGGCGACCATTTATTTACAGTCGTGGACCTGAAATTAGATGTG
AGTTATTTTTAAGGCCGTTTTGGTAACTTCGGTTAGGCTGTCTTTTTTGT
TGCCCAGCGACGAGGGGACCTGTTAAGGAAATGTTCGATGTTCACACCCG
TTACTATACTAAAATCATTGTAAATAAACGAATGGGTCGAGTTACGTTGA
CTTAAAAAAAAAAAAAAAAACTGTTCTAAAACCAGTATTATAATATTGAA
CGAATCCAAGTTCCTGTGATTTTTTCATTATTCCACCTTTTTTTTTCCAA
TACTAAAATCAGTATAATAACCACGCACCCTACACACCGGTTTACATGAC
CTATCACGACACAAAACAGGGGGCCGGATTGGGTCGCCGTTTTCGACGAC
GTCCGGGTATCGAGGATCTCCAGGGTCCGGTTCGAGGAACCGCACGGAGA
GCCCGGCCCCAACATCAAGAGCTTTTTCGGCGTTGGACATGATGCCTTCG
CTCGTGTCAGGGGGTAGTGCGGGGGGAGACGGCAGCAGCGATGATGACGT
TGACGATAACGACGATGACTATCATACTCACCACAATAGTATGATGAGCA
GCAGTGGTGGTGGCGGTGGCGGCGGCGGTGGCGGTAGCGGGAGTGGCAGA
CGAGGGCTGGAAAATGACTTCGACGATGACAGCAGCGTGGGACGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig28854:760..2807-

>mRNA_H-paniculata_contig28854.7867.1 ID=mRNA_H-paniculata_contig28854.7867.1|Name=mRNA_H-paniculata_contig28854.7867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig28854:760..2807- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTCTGCGGAACGCAGAAGGCTTTACTCCAGGGGAGGGGGCGGGGG
CTCGTCGTCCCCGATGAGGACCCCTGGGGGGGGCAGAAGCAAGTCGCCAT
TTTCTGATGGGGTCTGCGGAACGCAGAAGGCTTTACTCCAGGGGAGGGGG
CGGGGGCTCGTCGTCCCCGATGAGGACCCCTGGGGGGGGCAGAAGCAAGT
CGCCATTTTCTGGGGGCCGGATTGGGTCGCCGTTTTCGACGACGTCCGGG
TATCGAGGATCTCCAGGGTCCGGTTCGAGGAACCGCACGGAGAGCCCGGC
CCCAACATCAAGAGCTTTTTCGGCGTTGGACATGATGCCTTCGCTCGTGT
CAGGGGGTAGTGCGGGGGGAGACGGCAGCAGCGATGATGACGTTGACGAT
AACGACGATGACTATCATACTCACCACAATAGTATGATGAGCAGCAGTGG
TGGTGGCGGTGGCGGCGGCGGTGGCGGTAGCGGGAGTGGCAGACGAGGGC
TGGAAAATGACTTCGACGATGACAGCAGCGTGGGACGCGGTGGGGCCGGA
TTGGGTCGCCGTTTTCGACGACGTCCGGGTATCGAGGATCTCCAGGGTCC
GGTTCGAGGAACCGCACGGAGAGCCCGGCCCCAACATCAAGAGCTTTTTC
GGCGTTGGACATGATGCCTTCGCTCGTGTCAGGGGGTAGTGCGGGGGGAG
ACGGCAGCAGCGATGATGACGTTGACGATAACGACGATGACTATCATACT
CACCACAATAGTATGATGAGCAGCAGTGGTGGTGGCGGTGGCGGCGGCGG
TGGCGGTAGCGGGAGTGGCAGACGAGGGCTGGAAAATGACTTCGACGATG
ACAGCAGCGTGGGACGCGGT
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