mRNA_H-paniculata_contig28837.7861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28837.7861.1
Unique NamemRNA_H-paniculata_contig28837.7861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.890e-16
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 AQLPPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            + L  TPHYNSAILEDMCM EHLAALH IC DSEAFRDAIILGKV
Sbjct:  343 SSLSATPHYNSAILEDMCMTEHLAALHGICGDSEAFRDAIILGKV 387
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.000e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 AQLPPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            + L  TPHYNSAILEDMCM EHLAALH IC DS+AFRDAIILGKV
Sbjct:  348 SSLSATPHYNSAILEDMCMTEHLAALHGICGDSKAFRDAIILGKV 392
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: A0A836CBT1_9STRA (Nrap protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.440e-8
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 PPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            PPTP YN+A+LEDM M  HLAALH   A S   RDAI+L KV
Sbjct:  274 PPTPCYNAAVLEDMAMARHLAALHAASAASPGLRDAIMLAKV 315
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: C3Z9X5_BRAFL (Nucleolar protein 6 n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z9X5_BRAFL)

HSP 1 Score: 50.8 bits (120), Expect = 4.370e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   10 PPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            PPTPHYNS+IL DM M EHL  L  + AD  A R+ ++L KV
Sbjct:  218 PPTPHYNSSILVDMTMAEHLHHLFSLSADFPAMREGLVLLKV 259
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: A0A8J9ZEW8_BRALA (Hypp1147 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZEW8_BRALA)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   10 PPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            PPTPHYNS+IL DM M EHL  L  + A+  A R+ ++L KV
Sbjct:  322 PPTPHYNSSILVDMMMTEHLHHLFSLSAEVPAMREGLVLLKV 363
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: S3CKE5_GLAL2 (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3CKE5_GLAL2)

HSP 1 Score: 48.1 bits (113), Expect = 3.930e-5
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 AQLPPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            A LP TP YNS++  D   + +L  LH     SEAFRDA++LG++
Sbjct:  290 APLPATPFYNSSLFSDANYEPYLQVLHSATKQSEAFRDAVVLGRI 334
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BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Match: A0A822BGF1_9NEOB (Nucleolar protein 6 n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822BGF1_9NEOB)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 AQLPPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV 135
            A LPPTPHYN+A+L D+ M++H   L    +D  A +D I + KV
Sbjct:  283 ASLPPTPHYNNAVLSDLAMEQHFHHLSSCVSDFPAMKDGISILKV 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28837.7861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FGX0_ECTSI2.890e-1684.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE1.000e-1582.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBT1_9STRA5.440e-864.29Nrap protein-domain-containing protein n=1 Tax=Tri... [more]
C3Z9X5_BRAFL4.370e-657.14Nucleolar protein 6 n=2 Tax=Branchiostoma floridae... [more]
A0A8J9ZEW8_BRALA1.530e-554.76Hypp1147 protein n=1 Tax=Branchiostoma lanceolatum... [more]
S3CKE5_GLAL23.930e-546.67U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A822BGF1_9NEOB5.380e-546.67Nucleolar protein 6 n=1 Tax=Ranitomeya imitator Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28837contigH-paniculata_contig28837:2057..2191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.142837-CDS-H-paniculata_contig28837:2056..21911622929878.142837-CDS-H-paniculata_contig28837:2056..2191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28837 2057..2191 +
1691481051.3684716-CDS-H-paniculata_contig28837:2056..21911691481051.3684716-CDS-H-paniculata_contig28837:2056..2191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28837 2057..2191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28837.7861.1prot_H-paniculata_contig28837.7861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28837 2057..2191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28837.7861.1

>prot_H-paniculata_contig28837.7861.1 ID=prot_H-paniculata_contig28837.7861.1|Name=mRNA_H-paniculata_contig28837.7861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
AQLPPTPHYNSAILEDMCMKEHLAALHEICADSEAFRDAIILGKV
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mRNA from alignment at H-paniculata_contig28837:2057..2191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28837.7861.1 ID=mRNA_H-paniculata_contig28837.7861.1|Name=mRNA_H-paniculata_contig28837.7861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig28837:2057..2191+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCAACTGCCTCCAACGCCTCACTACAATAGCGCCATCCTGGAAGACAT
GTGCATGAAGGAGCATCTGGCGGCTCTGCACGAGATTTGCGCGGATTCGG
AAGCGTTCCGCGATGCTATTATTCTTGGAAAGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig28837:2057..2191+

>mRNA_H-paniculata_contig28837.7861.1 ID=mRNA_H-paniculata_contig28837.7861.1|Name=mRNA_H-paniculata_contig28837.7861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig28837:2057..2191+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCAACTGCCTCCAACGCCTCACTACAATAGCGCCATCCTGGAAGACAT
GTGCATGAAGGAGCATCTGGCGGCTCTGCACGAGATTTGCGCGGATTCGG
AAGCGTTCCGCGATGCTATTATTCTTGGAAAGGTTGCTCAACTGCCTCCA
ACGCCTCACTACAATAGCGCCATCCTGGAAGACATGTGCATGAAGGAGCA
TCTGGCGGCTCTGCACGAGATTTGCGCGGATTCGGAAGCGTTCCGCGATG
CTATTATTCTTGGAAAGGTT
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