prot_H-paniculata_contig28834.7860.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28834.7860.1
Unique Nameprot_H-paniculata_contig28834.7860.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length111
Homology
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.440e-28
Identity = 58/115 (50.43%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAA------IQLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+KVK +NT+KAR+V +GW Q  GRDC    + VC +QS+RM  A+AA      IQLDV+TAFL A ++E+V+V + PG+E   +  + LVMK  +SL GL QSPQ+W  T+D
Sbjct:  352 KWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTID 466          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.530e-28
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAIQ------LDVQTAFLNAPLDEDVYVRLPPGFEK-HTVTGVPLVMKFRRSLYGLLQSPQNWWITMDE 110
            +WVY+VK D  +KARVV QGW Q+ G DC    + VC I S R+ +A+AA Q      +DVQTAFLN  L EDVY    PGFEK  + TG PLV K ++SLYGL QSP  W +T+D+
Sbjct:  694 RWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDK 810          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.360e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct:  180 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 294          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.490e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct: 1201 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 1315          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.500e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct: 1366 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 1480          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.740e-26
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL   + E+V+V  PPGFE     G  +VMK  RSLYGL QSP NW+ T+D
Sbjct:  982 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTID 1096          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.300e-25
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D ++K R+V QGW Q  G DC    + VC +QS+RM   +A        Q+DV TAFL A + E+V+V  PPGFE     G  LVM+ ++SLYGL QSP NW+ T+D
Sbjct:  886 RWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTID 1000          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.220e-24
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K   ++K R+V QGW Q  G DC    + VC  QS+RM   +A        Q+DV TAFL A + E+V+V  PPGFE     G  LVM+ ++SLYGL QSP NW+ T+D
Sbjct:  509 KWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTID 623          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.640e-23
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D ++K R+V QGW Q  G DC    + VC +QS+RM   +A        Q+DV TAFL A + E ++V  P GFE     G  LVM+ ++SLYGL QSP+NW+ T+D
Sbjct:  529 KWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNWFHTID 643          
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.750e-23
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 109
            +WV+K K D ++K R+V QGW Q  G  C    + VC +QS+RM   +A        Q+DV TAFL   + E+V+V  PPGFE     G  LVM+ + SLYGL QSP NW+ T+D
Sbjct:  685 KWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNWFHTID 799          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE3.440e-2850.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAG6_9PHAE3.530e-2852.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.360e-2649.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.490e-2649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.500e-2649.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.740e-2649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIN1_9PHAE3.300e-2546.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE7.220e-2446.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KER0_9PHAE4.640e-2345.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K129_9PHAE4.750e-2345.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..109
e-value: 3.4E-24
score: 85.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..105
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28834contigH-paniculata_contig28834:133..465 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28834.7860.1mRNA_H-paniculata_contig28834.7860.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28834 133..465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28834.7860.1 ID=prot_H-paniculata_contig28834.7860.1|Name=mRNA_H-paniculata_contig28834.7860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAA
IQLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQS
PQNWWITMDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like