mRNA_H-paniculata_contig28834.7860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28834.7860.1
Unique NamemRNA_H-paniculata_contig28834.7860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.530e-28
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAIQ------LDVQTAFLNAPLDEDVYVRLPPGFEK-HTVTGVPLVMKFRRSLYGLLQSPQNWWITMDE 330
            +WVY+VK D  +KARVV QGW Q+ G DC    + VC I S R+ +A+AA Q      +DVQTAFLN  L EDVY    PGFEK  + TG PLV K ++SLYGL QSP  W +T+D+
Sbjct:  694 RWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDK 810
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.360e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct:  180 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 294
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.490e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct: 1201 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 1315
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.500e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL A + E+V+V  PPGFE     G  +VMK  +SLYGL QSP NW+ T+D
Sbjct: 1366 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTID 1480
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.740e-26
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D T+K RVV QGW Q  G DC    + VC IQSVRM   +         Q+DV TAFL   + E+V+V  PPGFE     G  +VMK  RSLYGL QSP NW+ T+D
Sbjct:  982 KWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTID 1096
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.300e-25
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D ++K R+V QGW Q  G DC    + VC +QS+RM   +A        Q+DV TAFL A + E+V+V  PPGFE     G  LVM+ ++SLYGL QSP NW+ T+D
Sbjct:  886 RWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTID 1000
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.220e-24
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K   ++K R+V QGW Q  G DC    + VC  QS+RM   +A        Q+DV TAFL A + E+V+V  PPGFE     G  LVM+ ++SLYGL QSP NW+ T+D
Sbjct:  509 KWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTID 623
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BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.640e-23
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D ++K R+V QGW Q  G DC    + VC +QS+RM   +A        Q+DV TAFL A + E ++V  P GFE     G  LVM+ ++SLYGL QSP+NW+ T+D
Sbjct:  529 KWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNWFHTID 643
[Close]
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.750e-23
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D ++K R+V QGW Q  G  C    + VC +QS+RM   +A        Q+DV TAFL   + E+V+V  PPGFE     G  LVM+ + SLYGL QSP NW+ T+D
Sbjct:  685 KWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNWFHTID 799
[Close]
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.690e-23
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAAI------QLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQSPQNWWITMD 327
            +WV+K K D ++K R+V QGW Q  G D     + VC +QS+RM    A        Q+DV TAFL A + E+V+V  PPGFE     G  LVM+ ++SLYGL QSP NW+ T+D
Sbjct:  100 KWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTID 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28834.7860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE3.530e-2852.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.360e-2649.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.490e-2649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.500e-2649.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.740e-2649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIN1_9PHAE3.300e-2546.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE7.220e-2446.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KER0_9PHAE4.640e-2345.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K129_9PHAE4.750e-2345.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWT4_9PHAE5.690e-2346.09Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28834contigH-paniculata_contig28834:133..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.5
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog3702.AT4G23160.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:0071944,GO:0098542,GO:0140096,GO:1901564
EggNOG free text desc.receptor-like protein kinase
EggNOG OGs37HHV@33090,3GXUG@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.0995166-CDS-H-paniculata_contig28834:132..4651622929878.0995166-CDS-H-paniculata_contig28834:132..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28834 133..465 -
1691481051.358839-CDS-H-paniculata_contig28834:132..4651691481051.358839-CDS-H-paniculata_contig28834:132..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28834 133..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28834.7860.1prot_H-paniculata_contig28834.7860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28834 133..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28834.7860.1

>prot_H-paniculata_contig28834.7860.1 ID=prot_H-paniculata_contig28834.7860.1|Name=mRNA_H-paniculata_contig28834.7860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
QWVYKVKFDNTYKARVVGQGWRQEAGRDCCKIDSTVCPIQSVRMTVAVAA
IQLDVQTAFLNAPLDEDVYVRLPPGFEKHTVTGVPLVMKFRRSLYGLLQS
PQNWWITMDE*
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mRNA from alignment at H-paniculata_contig28834:133..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28834.7860.1 ID=mRNA_H-paniculata_contig28834.7860.1|Name=mRNA_H-paniculata_contig28834.7860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig28834:133..465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGTATACAAAGTCAAGTTTGACAACACATACAAAGCTCGAGTTGT
TGGACAGGGCTGGAGACAGGAGGCCGGACGCGACTGTTGCAAGATTGACT
CAACGGTGTGTCCTATACAAAGTGTTCGCATGACCGTGGCCGTGGCCGCC
ATTCAGCTCGATGTCCAAACGGCTTTCCTGAATGCACCTCTGGACGAGGA
CGTGTATGTGCGTCTACCACCTGGATTCGAGAAGCACACTGTGACGGGTG
TTCCACTCGTGATGAAGTTTCGTCGATCTTTGTATGGCCTTCTACAGTCA
CCTCAGAACTGGTGGATTACCATGGACGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig28834:133..465-

>mRNA_H-paniculata_contig28834.7860.1 ID=mRNA_H-paniculata_contig28834.7860.1|Name=mRNA_H-paniculata_contig28834.7860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig28834:133..465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGTATACAAAGTCAAGTTTGACAACACATACAAAGCTCGAGTTGT
TGGACAGGGCTGGAGACAGGAGGCCGGACGCGACTGTTGCAAGATTGACT
CAACGGTGTGTCCTATACAAAGTGTTCGCATGACCGTGGCCGTGGCCGCC
ATTCAGCTCGATGTCCAAACGGCTTTCCTGAATGCACCTCTGGACGAGGA
CGTGTATGTGCGTCTACCACCTGGATTCGAGAAGCACACTGTGACGGGTG
TTCCACTCGTGATGAAGTTTCGTCGATCTTTGTATGGCCTTCTACAGTCA
CCTCAGAACTGGTGGATTACCATGGACGAATAACAGTGGGTATACAAAGT
CAAGTTTGACAACACATACAAAGCTCGAGTTGTTGGACAGGGCTGGAGAC
AGGAGGCCGGACGCGACTGTTGCAAGATTGACTCAACGGTGTGTCCTATA
CAAAGTGTTCGCATGACCGTGGCCGTGGCCGCCATTCAGCTCGATGTCCA
AACGGCTTTCCTGAATGCACCTCTGGACGAGGACGTGTATGTGCGTCTAC
CACCTGGATTCGAGAAGCACACTGTGACGGGTGTTCCACTCGTGATGAAG
TTTCGTCGATCTTTGTATGGCCTTCTACAGTCACCTCAGAACTGGTGGAT
TACCATGGACGAATAA
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