mRNA_H-paniculata_contig2883.7858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2883.7858.1
Unique NamemRNA_H-paniculata_contig2883.7858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-18
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   10 VKVPQERAMDNPMDEIKRKHAVVIVNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTDCEPLVVKRGR 351
             +VP+++     M  +K+     +   I  E    T+DGWTSCAND+Y+S T + I   W+ V L + CSK  G +TG+ LA  I   +  H L G+V A TTDCEP +VK GR
Sbjct:    9 ARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGR 122          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.830e-14
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  100 EHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTDCEPLVVKRGR 351
            EH + T+DGWT  +ND+Y+SFT +YI   ++ VAL L C K   ++ GEDL  ++   +  + L GR VA TTDCE  +VK GR
Sbjct:    4 EHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGR 87          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.860e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  133 SCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTDCEPLVVKRGR 351
            S +ND+Y++FT +YI   ++ VAL L   K  G++TGEDL  ++   +  + L GR VA TTDCEP +VK GR
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGR 75          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI001C1A98B4 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A98B4)

HSP 1 Score: 56.2 bits (134), Expect = 1.410e-6
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 RVKVPQERAMDNPMDEIKRKHAVVI---VNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTD 321
            R K+P  + +   + EI      ++    +K++S+  + TTD WT+C N +Y+S T+ +IDD W+   ++L       + TG  LA ++   +ND  L  +++A TTD
Sbjct:  137 RYKLPSRQTVSIKIQEIYESQCKILKTYFSKLSSK-VTITTDVWTACTNQAYMSVTLHWIDDEWKMYCILLDLVSLYERHTGVTLANTMYTIINDFGLGEKIIAITTD 243          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI001C162B64 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C162B64)

HSP 1 Score: 55.1 bits (131), Expect = 3.600e-6
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 RVKVPQERAMDNPMDEIKRKHAVVI---VNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTD 321
            R K+P  + +   + EI      ++    +K++S+  + TTD WT+C N +Y+S T+ +IDD W+   ++L       + TG  LA ++   +ND  L  +++A TTD
Sbjct:  164 RYKLPSRQTVSIKIQEIYESQCKILKTYFSKLSSK-VAITTDVWTACTNQAYMSVTLHWIDDEWKMYCILLDLVPLHERHTGVTLANTMYTIINDFGLGEKIIAITTD 270          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI001C1A592D (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A592D)

HSP 1 Score: 55.1 bits (131), Expect = 3.800e-6
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 RVKVPQERAMDNPMDEIKRKHAVVI---VNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTD 321
            R K+P  + +   + EI      ++    +K++S+  + TTD WT+C N +Y+S T+ +IDD W+   ++L       + TG  LA ++   +ND  L  +++A TTD
Sbjct:  163 RYKLPSRQTVSIKIQEIYESQCKILKTYFSKLSSK-VAITTDVWTACTNQAYMSVTLHWIDDEWKMYCILLDLVPLHERHTGVTLANTMYTIINDFGLGEKIIAITTD 269          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: X1WY43_ACYPI (DUF659 domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WY43_ACYPI)

HSP 1 Score: 53.5 bits (127), Expect = 1.090e-5
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   79 IVNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTD 321
            I+  IN  + S TTDGWTS A DSY++FT+ Y DD W+  ++ LS  +     T E+L  SI   +   +L  ++   + D
Sbjct:   83 IIENIN--YISLTTDGWTSTAIDSYLTFTVHYFDDNWKLYSVTLSIEEIQESHTAENLKDSIMNVIESWNLNNKITGISHD 161          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI000DC13D07 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13D07)

HSP 1 Score: 52.8 bits (125), Expect = 2.400e-5
Identity = 39/126 (30.95%), Postives = 60/126 (47.62%), Query Frame = 1
Query:   25 ERAMDNPMDEIKRKHAVVIVNKINSEHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGRVVAGTTDCEPLVVKRGRRRRVQARRVHKPPAEEH 402
            E+  D+ M E+KR       N  N +  + TTDGWTS A DSYI+FT  Y ++ WE    VL   +     T +++  S+   +   +L G+V+  + D    V    R   +Q R ++  P   H
Sbjct:  128 EKMYDDKMMELKR-------NLENIKGVALTTDGWTSLAVDSYITFTCHYFNENWELCTQVLGFEEMRESHTADNIQDSLINIIETWNLTGKVIGISHDNAANVTNAVRN--LQERDIYSSPCAAH 244          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI000905C858 (zinc finger BED domain-containing protein 1 n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000905C858)

HSP 1 Score: 51.2 bits (121), Expect = 8.180e-5
Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  100 EHPSTTTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDL-EGRVVAGTTDCEPLVVK 342
            +H + T+D W+SC  + YIS T+ YID+ WE    VL  +      TGE + + +   ++  D+ E  +VA TTD  P +VK
Sbjct:  208 KHVAATSDLWSSCTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHTGEMVGQGLRAMLSAWDISEEDLVAITTDNGPNIVK 289          
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Match: UPI00096AF313 (zinc finger BED domain-containing protein 1-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AF313)

HSP 1 Score: 51.2 bits (121), Expect = 8.400e-5
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   55 IKRKHAV---VIVNKINSEHPST--TTDGWTSCANDSYISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDL 252
            I++KH V    ++ ++ +E+  T  T+D WTSCAND+YIS T  +ID  W+ V+ VL  S   G  TG  +
Sbjct:  165 IRQKHEVGKRAMMQRLKNENAFTAFTSDIWTSCANDAYISLTAHFIDSDWQLVSCVLGSSPFPGHHTGSHI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2883.7858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE4.170e-1841.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.830e-1446.43Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.860e-1146.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C1A98B41.410e-630.56Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
UPI001C162B643.600e-630.56Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
UPI001C1A592D3.800e-630.56Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
X1WY43_ACYPI1.090e-537.04DUF659 domain-containing protein n=2 Tax=Acyrthosi... [more]
UPI000DC13D072.400e-530.95zinc finger BED domain-containing protein 1-like n... [more]
UPI000905C8588.180e-536.59zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI00096AF3138.400e-540.85zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2883contigH-paniculata_contig2883:14235..14636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue4e-18
Seed eggNOG ortholog2880.D8LCS5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.8972895-CDS-H-paniculata_contig2883:14234..146361622929877.8972895-CDS-H-paniculata_contig2883:14234..14636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2883 14235..14636 +
1691481051.2928145-CDS-H-paniculata_contig2883:14234..146361691481051.2928145-CDS-H-paniculata_contig2883:14234..14636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2883 14235..14636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2883.7858.1prot_H-paniculata_contig2883.7858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2883 14235..14636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2883.7858.1

>prot_H-paniculata_contig2883.7858.1 ID=prot_H-paniculata_contig2883.7858.1|Name=mRNA_H-paniculata_contig2883.7858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
RRRVKVPQERAMDNPMDEIKRKHAVVIVNKINSEHPSTTTDGWTSCANDS
YISFTMSYIDDGWEWVALVLSCSKKLGQSTGEDLARSIDRFMNDHDLEGR
VVAGTTDCEPLVVKRGRRRRVQARRVHKPPAEEH
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mRNA from alignment at H-paniculata_contig2883:14235..14636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2883.7858.1 ID=mRNA_H-paniculata_contig2883.7858.1|Name=mRNA_H-paniculata_contig2883.7858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2883:14235..14636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGGAGAGTGAAGGTGCCGCAGGAACGTGCTATGGATAACCCAATGGA TGAGATCAAGCGAAAGCATGCCGTGGTGATTGTGAACAAGATCAACTCCG AGCACCCGTCCACCACCACTGATGGTTGGACGTCATGTGCCAACGACTCC TACATATCCTTCACCATGTCGTACATCGACGATGGATGGGAGTGGGTGGC GCTCGTGCTCAGCTGCTCGAAGAAGTTGGGACAGAGTACAGGAGAAGACC TGGCTCGTTCGATTGACAGGTTTATGAACGACCACGACCTTGAGGGGCGC GTGGTTGCGGGCACCACGGACTGCGAGCCGTTGGTGGTGAAGAGGGGTCG CAGGCGGCGTGTTCAAGCACGTCGGGTGCACAAACCACCGGCTGAAGAGC AC
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Coding sequence (CDS) from alignment at H-paniculata_contig2883:14235..14636+

>mRNA_H-paniculata_contig2883.7858.1 ID=mRNA_H-paniculata_contig2883.7858.1|Name=mRNA_H-paniculata_contig2883.7858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig2883:14235..14636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGGAGAGTGAAGGTGCCGCAGGAACGTGCTATGGATAACCCAATGGA
TGAGATCAAGCGAAAGCATGCCGTGGTGATTGTGAACAAGATCAACTCCG
AGCACCCGTCCACCACCACTGATGGTTGGACGTCATGTGCCAACGACTCC
TACATATCCTTCACCATGTCGTACATCGACGATGGATGGGAGTGGGTGGC
GCTCGTGCTCAGCTGCTCGAAGAAGTTGGGACAGAGTACAGGAGAAGACC
TGGCTCGTTCGATTGACAGGTTTATGAACGACCACGACCTTGAGGGGCGC
GTGGTTGCGGGCACCACGGACTGCGAGCCGTTGGTGGTGAAGAGGGGTCG
CAGGCGGCGTGTTCAAGCACGTCGGGTGCACAAACCACCGGCTGAAGAGC
ACCGTCGGAGAGTGAAGGTGCCGCAGGAACGTGCTATGGATAACCCAATG
GATGAGATCAAGCGAAAGCATGCCGTGGTGATTGTGAACAAGATCAACTC
CGAGCACCCGTCCACCACCACTGATGGTTGGACGTCATGTGCCAACGACT
CCTACATATCCTTCACCATGTCGTACATCGACGATGGATGGGAGTGGGTG
GCGCTCGTGCTCAGCTGCTCGAAGAAGTTGGGACAGAGTACAGGAGAAGA
CCTGGCTCGTTCGATTGACAGGTTTATGAACGACCACGACCTTGAGGGGC
GCGTGGTTGCGGGCACCACGGACTGCGAGCCGTTGGTGGTGAAGAGGGGT
CGCAGGCGGCGTGTTCAAGCACGTCGGGTGCACAAACCACCGGCTGAAGA
GCAC
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