prot_H-paniculata_contig28828.7856.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28828.7856.1
Unique Nameprot_H-paniculata_contig28828.7856.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.390e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0
Query:   10 VRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            V Y  GMEAGARQ AQN+F RGR+R+VVATVAFGLGVDMR+IRGV+HFDMPKSIENYVQ
Sbjct: 1607 VAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1665          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.390e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0
Query:   10 VRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            V Y  GMEAGARQ AQN+F RGR+R+VVATVAFGLGVDMR+IRGV+HFDMPKSIENYVQ
Sbjct: 1753 VAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1811          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A8B6HC87_MYTGA (ATP-dependent DNA helicase Q4 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HC87_MYTGA)

HSP 1 Score: 77.4 bits (189), Expect = 7.990e-17
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   12 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            Y  G+ A AR+  QN+F  GR R+VVATVAFG+G+D   +RGVIH++MPKS E+YVQ
Sbjct:   21 YHAGLSAAARKRVQNAFMSGRLRVVVATVAFGMGLDKSNVRGVIHYNMPKSFESYVQ 77          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A6J7ZXF8_MYTCO (RECQL4 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J7ZXF8_MYTCO)

HSP 1 Score: 77.4 bits (189), Expect = 6.900e-15
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   12 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            Y  G+ A AR+  QN+F  GR R+VVATVAFG+G+D   +RGVIH++MPKS E+YVQ
Sbjct:  893 YHAGLSAAARKRVQNAFMSGRLRVVVATVAFGMGLDKSNVRGVIHYNMPKSFESYVQ 949          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7K4K7Y8_9AVES (RECQ4 helicase (Fragment) n=2 Tax=Crypturellus TaxID=48395 RepID=A0A7K4K7Y8_9AVES)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 RKILLPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            + + L +    Y  G+    R+  Q +F RGR R+VVATVAFG+G+D  ++RGV+H++MPKS E+YVQ
Sbjct:   94 KSVRLEWLADAYHAGLPPAERRRVQGAFMRGRLRVVVATVAFGMGLDKADVRGVVHYNMPKSFESYVQ 161          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7K6YF73_ALCTO (RECQ4 helicase (Fragment) n=2 Tax=Charadriiformes TaxID=8906 RepID=A0A7K6YF73_ALCTO)

HSP 1 Score: 73.6 bits (179), Expect = 9.150e-15
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   12 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            Y  G+ A  R+  Q SF  GR R+VVATVAFG+G+D  ++RGV+H++MPK+ E+YVQ
Sbjct:   79 YHAGLSAAERRRVQKSFMSGRLRVVVATVAFGMGLDKADVRGVVHYNMPKNFESYVQ 135          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: UPI001CFC41A3 (ATP-dependent DNA helicase Q4 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC41A3)

HSP 1 Score: 77.0 bits (188), Expect = 9.440e-15
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0
Query:    1 RKILLPFTRVR--YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            +KI LP   +   Y  GM A  R+  QN+F  G+ RIVVATVAFG+G+D  ++RG+IH++MPKS E+YVQ
Sbjct: 1047 KKIRLPLKWIADSYHAGMSAFQRRRVQNNFMSGQLRIVVATVAFGMGLDKSDVRGIIHYNMPKSFESYVQ 1116          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7L2UZ04_BALRX (RECQ4 helicase (Fragment) n=1 Tax=Balaeniceps rex TaxID=33584 RepID=A0A7L2UZ04_BALRX)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-14
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   12 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            Y  G+ A  R+  QNSF  GR R+VVATVAFG+G+D  ++RGV+H++MPK+ E+YVQ
Sbjct:  197 YHAGLSAAERRRVQNSFMSGRLRVVVATVAFGMGLDKSDVRGVVHYNMPKNFESYVQ 253          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A851M1V9_CORCR (RECQ4 helicase (Fragment) n=1 Tax=Corythaeola cristata TaxID=103954 RepID=A0A851M1V9_CORCR)

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0
Query:    5 LPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            LP+    Y  G+ A  R+  Q +F  GR R+VVATVAFG+G+D  ++RGVIH++MPK+ E+YVQ
Sbjct:  163 LPWIADAYHAGLSAAERRRVQKAFMSGRLRVVVATVAFGMGLDKADVRGVIHYNMPKNFESYVQ 226          
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: UPI001C65B014 (ATP-dependent DNA helicase n=2 Tax=unclassified Shewanella TaxID=196818 RepID=UPI001C65B014)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   12 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 68
            Y  GME+  RQ  Q +F  GR  I+VAT+AFG+GVD ++IR V+HFD+PKSIENY Q
Sbjct:  256 YHAGMESDKRQQVQKAFMSGRCPIIVATIAFGMGVDKQDIRFVVHFDLPKSIENYAQ 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI4.390e-2483.05DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE4.390e-2483.05DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A8B6HC87_MYTGA7.990e-1759.65ATP-dependent DNA helicase Q4 n=1 Tax=Mytilus gall... [more]
A0A6J7ZXF8_MYTCO6.900e-1559.65RECQL4 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A7K4K7Y8_9AVES7.910e-1547.06RECQ4 helicase (Fragment) n=2 Tax=Crypturellus Tax... [more]
A0A7K6YF73_ALCTO9.150e-1554.39RECQ4 helicase (Fragment) n=2 Tax=Charadriiformes ... [more]
UPI001CFC41A39.440e-1552.86ATP-dependent DNA helicase Q4 n=1 Tax=Protopterus ... [more]
A0A7L2UZ04_BALRX1.050e-1456.14RECQ4 helicase (Fragment) n=1 Tax=Balaeniceps rex ... [more]
A0A851M1V9_CORCR1.200e-1451.56RECQ4 helicase (Fragment) n=1 Tax=Corythaeola cris... [more]
UPI001C65B0141.260e-1459.65ATP-dependent DNA helicase n=2 Tax=unclassified Sh... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 1..70
e-value: 0.0072
score: 24.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 12..68
e-value: 1.1E-9
score: 38.7
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..74
score: 9.842
NoneNo IPR availableGENE3D3.40.50.300coord: 7..69
e-value: 6.6E-17
score: 63.7
NoneNo IPR availablePANTHERPTHR13710:SF108ATP-DEPENDENT DNA HELICASE Q4coord: 12..68
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 12..68
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28828contigH-paniculata_contig28828:2701..2925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28828.7856.1mRNA_H-paniculata_contig28828.7856.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28828 2701..2925 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28828.7856.1 ID=prot_H-paniculata_contig28828.7856.1|Name=mRNA_H-paniculata_contig28828.7856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
RKILLPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMRE
IRGVIHFDMPKSIENYVQVGLSLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase