mRNA_H-paniculata_contig28828.7856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28828.7856.1
Unique NamemRNA_H-paniculata_contig28828.7856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.390e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   28 VRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            V Y  GMEAGARQ AQN+F RGR+R+VVATVAFGLGVDMR+IRGV+HFDMPKSIENYVQ
Sbjct: 1607 VAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1665
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.390e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   28 VRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            V Y  GMEAGARQ AQN+F RGR+R+VVATVAFGLGVDMR+IRGV+HFDMPKSIENYVQ
Sbjct: 1753 VAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1811
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A8B6HC87_MYTGA (ATP-dependent DNA helicase Q4 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HC87_MYTGA)

HSP 1 Score: 77.4 bits (189), Expect = 7.990e-17
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   34 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            Y  G+ A AR+  QN+F  GR R+VVATVAFG+G+D   +RGVIH++MPKS E+YVQ
Sbjct:   21 YHAGLSAAARKRVQNAFMSGRLRVVVATVAFGMGLDKSNVRGVIHYNMPKSFESYVQ 77
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A6J7ZXF8_MYTCO (RECQL4 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J7ZXF8_MYTCO)

HSP 1 Score: 77.4 bits (189), Expect = 6.900e-15
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   34 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            Y  G+ A AR+  QN+F  GR R+VVATVAFG+G+D   +RGVIH++MPKS E+YVQ
Sbjct:  893 YHAGLSAAARKRVQNAFMSGRLRVVVATVAFGMGLDKSNVRGVIHYNMPKSFESYVQ 949
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7K4K7Y8_9AVES (RECQ4 helicase (Fragment) n=2 Tax=Crypturellus TaxID=48395 RepID=A0A7K4K7Y8_9AVES)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 RKILLPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            + + L +    Y  G+    R+  Q +F RGR R+VVATVAFG+G+D  ++RGV+H++MPKS E+YVQ
Sbjct:   94 KSVRLEWLADAYHAGLPPAERRRVQGAFMRGRLRVVVATVAFGMGLDKADVRGVVHYNMPKSFESYVQ 161
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7K6YF73_ALCTO (RECQ4 helicase (Fragment) n=2 Tax=Charadriiformes TaxID=8906 RepID=A0A7K6YF73_ALCTO)

HSP 1 Score: 73.6 bits (179), Expect = 9.150e-15
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   34 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            Y  G+ A  R+  Q SF  GR R+VVATVAFG+G+D  ++RGV+H++MPK+ E+YVQ
Sbjct:   79 YHAGLSAAERRRVQKSFMSGRLRVVVATVAFGMGLDKADVRGVVHYNMPKNFESYVQ 135
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: UPI001CFC41A3 (ATP-dependent DNA helicase Q4 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC41A3)

HSP 1 Score: 77.0 bits (188), Expect = 9.440e-15
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 RKILLPFTRVR--YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            +KI LP   +   Y  GM A  R+  QN+F  G+ RIVVATVAFG+G+D  ++RG+IH++MPKS E+YVQ
Sbjct: 1047 KKIRLPLKWIADSYHAGMSAFQRRRVQNNFMSGQLRIVVATVAFGMGLDKSDVRGIIHYNMPKSFESYVQ 1116
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A7L2UZ04_BALRX (RECQ4 helicase (Fragment) n=1 Tax=Balaeniceps rex TaxID=33584 RepID=A0A7L2UZ04_BALRX)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-14
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   34 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            Y  G+ A  R+  QNSF  GR R+VVATVAFG+G+D  ++RGV+H++MPK+ E+YVQ
Sbjct:  197 YHAGLSAAERRRVQNSFMSGRLRVVVATVAFGMGLDKSDVRGVVHYNMPKNFESYVQ 253
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: A0A851M1V9_CORCR (RECQ4 helicase (Fragment) n=1 Tax=Corythaeola cristata TaxID=103954 RepID=A0A851M1V9_CORCR)

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   13 LPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            LP+    Y  G+ A  R+  Q +F  GR R+VVATVAFG+G+D  ++RGVIH++MPK+ E+YVQ
Sbjct:  163 LPWIADAYHAGLSAAERRRVQKAFMSGRLRVVVATVAFGMGLDKADVRGVIHYNMPKNFESYVQ 226
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BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Match: UPI001C65B014 (ATP-dependent DNA helicase n=2 Tax=unclassified Shewanella TaxID=196818 RepID=UPI001C65B014)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   34 YDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMREIRGVIHFDMPKSIENYVQ 204
            Y  GME+  RQ  Q +F  GR  I+VAT+AFG+GVD ++IR V+HFD+PKSIENY Q
Sbjct:  256 YHAGMESDKRQQVQKAFMSGRCPIIVATIAFGMGVDKQDIRFVVHFDLPKSIENYAQ 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28828.7856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI4.390e-2483.05DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE4.390e-2483.05DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A8B6HC87_MYTGA7.990e-1759.65ATP-dependent DNA helicase Q4 n=1 Tax=Mytilus gall... [more]
A0A6J7ZXF8_MYTCO6.900e-1559.65RECQL4 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A7K4K7Y8_9AVES7.910e-1547.06RECQ4 helicase (Fragment) n=2 Tax=Crypturellus Tax... [more]
A0A7K6YF73_ALCTO9.150e-1554.39RECQ4 helicase (Fragment) n=2 Tax=Charadriiformes ... [more]
UPI001CFC41A39.440e-1552.86ATP-dependent DNA helicase Q4 n=1 Tax=Protopterus ... [more]
A0A7L2UZ04_BALRX1.050e-1456.14RECQ4 helicase (Fragment) n=1 Tax=Balaeniceps rex ... [more]
A0A851M1V9_CORCR1.200e-1451.56RECQ4 helicase (Fragment) n=1 Tax=Corythaeola cris... [more]
UPI001C65B0141.260e-1459.65ATP-dependent DNA helicase n=2 Tax=unclassified Sh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28828contigH-paniculata_contig28828:2701..2925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.6984508-CDS-H-paniculata_contig28828:2700..29251622929877.6984508-CDS-H-paniculata_contig28828:2700..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28828 2701..2925 +
1691481051.2134943-CDS-H-paniculata_contig28828:2700..29251691481051.2134943-CDS-H-paniculata_contig28828:2700..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28828 2701..2925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28828.7856.1prot_H-paniculata_contig28828.7856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28828 2701..2925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28828.7856.1

>prot_H-paniculata_contig28828.7856.1 ID=prot_H-paniculata_contig28828.7856.1|Name=mRNA_H-paniculata_contig28828.7856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
RKILLPFTRVRYDPGMEAGARQNAQNSFTRGRARIVVATVAFGLGVDMRE
IRGVIHFDMPKSIENYVQVGLSLF*
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mRNA from alignment at H-paniculata_contig28828:2701..2925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28828.7856.1 ID=mRNA_H-paniculata_contig28828.7856.1|Name=mRNA_H-paniculata_contig28828.7856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig28828:2701..2925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAAAATATTACTACCCTTCACGCGCGTGCGCTATGATCCAGGTATGGA
GGCTGGGGCTCGCCAGAACGCCCAAAACTCCTTCACGAGGGGCAGGGCCA
GGATCGTGGTCGCTACCGTAGCGTTTGGGCTCGGCGTGGACATGCGAGAG
ATCCGCGGCGTGATCCATTTCGACATGCCCAAGAGCATAGAGAACTATGT
GCAGGTGGGTTTAAGTCTTTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28828:2701..2925+

>mRNA_H-paniculata_contig28828.7856.1 ID=mRNA_H-paniculata_contig28828.7856.1|Name=mRNA_H-paniculata_contig28828.7856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig28828:2701..2925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAAAATATTACTACCCTTCACGCGCGTGCGCTATGATCCAGGTATGGA
GGCTGGGGCTCGCCAGAACGCCCAAAACTCCTTCACGAGGGGCAGGGCCA
GGATCGTGGTCGCTACCGTAGCGTTTGGGCTCGGCGTGGACATGCGAGAG
ATCCGCGGCGTGATCCATTTCGACATGCCCAAGAGCATAGAGAACTATGT
GCAGGTGGGTTTAAGTCTTTTTTGACGTAAAATATTACTACCCTTCACGC
GCGTGCGCTATGATCCAGGTATGGAGGCTGGGGCTCGCCAGAACGCCCAA
AACTCCTTCACGAGGGGCAGGGCCAGGATCGTGGTCGCTACCGTAGCGTT
TGGGCTCGGCGTGGACATGCGAGAGATCCGCGGCGTGATCCATTTCGACA
TGCCCAAGAGCATAGAGAACTATGTGCAGGTGGGTTTAAGTCTTTTTTGA
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