mRNA_H-paniculata_contig28818.7853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28818.7853.1
Unique NamemRNA_H-paniculata_contig28818.7853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28818.7853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28818contigH-paniculata_contig28818:1785..2196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size412
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28818.7853.1prot_H-paniculata_contig28818.7853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28818 1787..2146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.3977792-UTR-H-paniculata_contig28818:1784..17861622929877.3977792-UTR-H-paniculata_contig28818:1784..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28818 1785..1786 +
1691481051.0491304-UTR-H-paniculata_contig28818:1784..17861691481051.0491304-UTR-H-paniculata_contig28818:1784..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28818 1785..1786 +
1622929877.4335704-UTR-H-paniculata_contig28818:2146..21961622929877.4335704-UTR-H-paniculata_contig28818:2146..2196Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28818 2147..2196 +
1691481051.0733902-UTR-H-paniculata_contig28818:2146..21961691481051.0733902-UTR-H-paniculata_contig28818:2146..2196Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28818 2147..2196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.413208-CDS-H-paniculata_contig28818:1786..21461622929877.413208-CDS-H-paniculata_contig28818:1786..2146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28818 1787..2146 +
1691481051.0638947-CDS-H-paniculata_contig28818:1786..21461691481051.0638947-CDS-H-paniculata_contig28818:1786..2146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28818 1787..2146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28818.7853.1

>prot_H-paniculata_contig28818.7853.1 ID=prot_H-paniculata_contig28818.7853.1|Name=mRNA_H-paniculata_contig28818.7853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MAGGQTALGRSNHQDYQLDPMELEWLSINAVSASKRARVHLMATKDPEKA
FLQRKRAGPVCLNCNASEHFVMNCPLGFTNTTKLLNPELEENGESEKADS
KWRRLQERMRKYRAKKQDE*
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mRNA from alignment at H-paniculata_contig28818:1785..2196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28818.7853.1 ID=mRNA_H-paniculata_contig28818.7853.1|Name=mRNA_H-paniculata_contig28818.7853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=412bp|location=Sequence derived from alignment at H-paniculata_contig28818:1785..2196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGCAGGAGGTCAAACTGCTCTTGGGCGAAGCAACCACCAAGACTAC
CAGCTTGATCCGATGGAATTAGAGTGGTTATCCATTAATGCGGTGTCAGC
GTCGAAACGGGCGAGAGTGCATCTCATGGCAACCAAAGACCCGGAGAAGG
CGTTTTTACAGAGGAAAAGAGCGGGTCCAGTATGCTTGAACTGTAATGCG
AGCGAACACTTTGTCATGAACTGTCCTTTGGGTTTCACAAATACAACGAA
ACTGTTAAACCCCGAGCTAGAGGAAAATGGCGAATCAGAGAAAGCAGATT
CGAAATGGAGGCGGCTACAAGAACGTATGAGAAAGTATAGAGCGAAGAAG
CAAGACGAATGAGTAACACTCGGCGTAGGGAGCCGGCCTACGCCGAAAAC
AGCTCCGGCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig28818:1785..2196+

>mRNA_H-paniculata_contig28818.7853.1 ID=mRNA_H-paniculata_contig28818.7853.1|Name=mRNA_H-paniculata_contig28818.7853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig28818:1785..2196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGAGGTCAAACTGCTCTTGGGCGAAGCAACCACCAAGACTACCA
GCTTGATCCGATGGAATTAGAGTGGTTATCCATTAATGCGGTGTCAGCGT
CGAAACGGGCGAGAGTGCATCTCATGGCAACCAAAGACCCGGAGAAGGCG
TTTTTACAGAGGAAAAGAGCGGGTCCAGTATGCTTGAACTGTAATGCGAG
CGAACACTTTGTCATGAACTGTCCTTTGGGTTTCACAAATACAACGAAAC
TGTTAAACCCCGAGCTAGAGGAAAATGGCGAATCAGAGAAAGCAGATTCG
AAATGGAGGCGGCTACAAGAACGTATGAGAAAGTATAGAGCGAAGAAGCA
AGACGAATGAATGGCAGGAGGTCAAACTGCTCTTGGGCGAAGCAACCACC
AAGACTACCAGCTTGATCCGATGGAATTAGAGTGGTTATCCATTAATGCG
GTGTCAGCGTCGAAACGGGCGAGAGTGCATCTCATGGCAACCAAAGACCC
GGAGAAGGCGTTTTTACAGAGGAAAAGAGCGGGTCCAGTATGCTTGAACT
GTAATGCGAGCGAACACTTTGTCATGAACTGTCCTTTGGGTTTCACAAAT
ACAACGAAACTGTTAAACCCCGAGCTAGAGGAAAATGGCGAATCAGAGAA
AGCAGATTCGAAATGGAGGCGGCTACAAGAACGTATGAGAAAGTATAGAG
CGAAGAAGCAAGACGAATGA
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