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Homology
BLAST of mRNA_H-paniculata_contig2881.7852.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.760e-28 Identity = 131/413 (31.72%), Postives = 175/413 (42.37%), Query Frame = 1
Query: 64 MFNVLASKLGEVQAFADGLGNPLEALSMDRLRDEEERKESSSSRQRESCRSPRARGDEPGGGVMDGLTLDDELQQGVDDGKIDGNTPHRGTATSLHYRRPAVSPRCAR-DNSDVSGCGGGHSAPGELELPHRHSQAEHEILMNGFGIMNKFGKIDDKDLECMGDDDDGNFEDEFDPILASIRKPPQPSPTASCASSSTVGGGSKNSSSPGKGGISEGGDRGK------RHDSGVSFGTGLRSIFPRNVRARAEDVVTQSSANMSKTAGAFRVAFGLGVNGTGGT--GWRRDSSTGMVREEGREKDLGTISSARRVGLGGGKCSGLGGEEDVLVLDANELLSEEERXXLAXXXXXXX-GRFCGWRRLRKYAPIVAGVALFSAIYLWRWKALPEDVAGVAGEAGEEAAALGPGRI 1272
MF++LASK+GE QAFADGL N L+ ++MDRL +E+ER R P+ + DN+++ H +P R S +EH + F M G NFEDEFDPILASIRKP QP + + A+SS G G +RG+ R +G S G S+ P ++RA+A +V+ QSSA +S++A AFR A G G T RR S +G + +L G G E+DV +++ NE+LSEEER LA GRFCGWRRLRKY P+ G+ L +YLWRW L V + E LG R+
Sbjct: 1 MFDMLASKIGEAQAFADGLVN-LDVINMDRLLEEQERXXX--------XXXXXLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIEIPQLRQEDNAELRS----HPSP-------RGSTSEHSSFGDRFASMEDGGV---------------NFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXX--XPSGRERGREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQSDHTCRGVDGGDHELE---------------EGRGDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYVPVFVGIGLLGLLYLWRWTTLL-----VGKDTANEVKVLGSERM 356
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_011590.1 |
| Exons | 4 |
| Model size | 2433 |
| Cds size | 1212 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2881.7852.1 >prot_H-paniculata_contig2881.7852.1 ID=prot_H-paniculata_contig2881.7852.1|Name=mRNA_H-paniculata_contig2881.7852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=404bp
MFNVLASKLGEVQAFADGLGNPLEALSMDRLRDEEERKESSSSRQRESCR
SPRARGDEPGGGVMDGLTLDDELQQGVDDGKIDGNTPHRGTATSLHYRRP
AVSPRCARDNSDVSGCGGGHSAPGELELPHRHSQAEHEILMNGFGIMNKF
GKIDDKDLECMGDDDDGNFEDEFDPILASIRKPPQPSPTASCASSSTVGG
GSKNSSSPGKGGISEGGDRGKRHDSGVSFGTGLRSIFPRNVRARAEDVVT
QSSANMSKTAGAFRVAFGLGVNGTGGTGWRRDSSTGMVREEGREKDLGTI
SSARRVGLGGGKCSGLGGEEDVLVLDANELLSEEERRQLATISGGGGGRF
CGWRRLRKYAPIVAGVALFSAIYLWRWKALPEDVAGVAGEAGEEAAALGP
GRI* back to topmRNA from alignment at H-paniculata_contig2881:6683..12316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2881.7852.1 ID=mRNA_H-paniculata_contig2881.7852.1|Name=mRNA_H-paniculata_contig2881.7852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5634bp|location=Sequence derived from alignment at H-paniculata_contig2881:6683..12316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAACCTAATGTTTCCGCTTCGTCTATTGAGCACGGACGGGCTCTAGC
TGGACAAGAGAAGATGTTCAATGTTCTAGCCTCCAAACTTGGGGAGGTTC
AGGCATTTGCCGATGGCTTGGGTAATCCCTTGGAGGCTCTCAGCATGGAC
AGGTAGGTAAAAGGAATCTGTTGTAAATTGTAACAGGTTGTAGCAGCTAC
TAACAGGACGAGACACTGGCTTACAGAGTCAGGAAAATCGTTCTCTACAG
GCTGTCAGTCAAAGAATTGTGCTCGTTTACAAGCTCGGTAGCTCGATGTA
CGCTGAGGCGAGGCCCATTGATGTACGCTAGCCAGGGATGAGTCTGTGTT
TCCAACACTTTGTGAGGCCTGAATCGCACTTAAGCAACTTTCACCAAGTG
TGGAACAAATACGACGAGCACTCACAAAATCTACTTCACTGTCTTTTATT
TGTTGCTGACCTCCAAACAAACGCCAACCTTCTACTGCACAGAATTGGAC
CCGATATAAAGCGGGGTAGTTACAACCCAATTTTACCCGCACTGTAGCTA
GTATTGCCGCGTTGTCAAGGAGTAATTCGGGTCCTGCCTCATACAGGGCG
CCCAGAATAAGGTGAAAATGCCTTGTGTACAATGTCCTGATGGCACACGT
CCCGGCGCTGTTGTAATCCTAATAGATCTGGCAGGCACTGCTGTCTTCTT
GATACTACAGTACAGTAGTACAGAGTTGCACAGTATTTATTATGCTATGG
AGACGCTTTTCGAATTTTGAACGCCTTTTTTTCGCGACTTTTACGCCCGT
AGTGATCCAGTTTTCGCGGAGTAACGATCCACCAAACTGTCTAATCACCT
GTAAACTATAGTTATAAACTAGTATGCCTGAAAAGCTGGAGGTGGTGCCA
ATGCAACGCAAAAAGAAAAACAAATATCCAGCAAGCTGCTGTCAAGATAG
AGGGGTTTGAATTTGGGCATGTCGCCCAAAAATAGAGTACTCACTTCGAA
CACACTCCACGACCACAGCATACAGCTACGACGGTAAAACCAGGGCAGAC
GTGTTCCTCTTGACATAGTGGATGTGGTCACGCTCGGGATTTGGTGTATT
TGCTGTCGCGGTGAAGAACTGGAGGTCGATCTATAGGGGTCGCCTCGAAT
TCATGGAGGAACACGTCTTTTTTTTTAAGCGGTGGAATCAAGTTTTTGCA
GAAAACACATCAAGGCAGTGTTTGCGGCAGGGATTGGAATCAGGAGTGGA
GGAATAGGCGATGAACTCAACGAGTTCGAGGCCGACTATTTGGCGGGAAA
TCAGTGTGAGGGTGAGAGTAGGCATTAGGATTAGGTTTTTGTAGAACGAG
GTACGTCAGCTTTTCTCAGCAAAATTCCACGGGAGCAAGGACTTGTTTGT
GTTTGTCCTACAGTACAGTAGGTGGCGAGCAGCTAAACTCTCTGTAACTG
TACGCCACTGTTTTTGCGTGGCACCGTCTGTTTGGACACGTCGATGTGTT
TGGCAAGAAGTCAACGATTAAACAAACTGAAACACCGATATTGTTTTTGC
GTACAGGAGTTCGCGCAAGCCTTTTCGAGTTGCCGACAACATACAGCCGT
CCCAAGTGCAATTACGGTCTTCATTTTGGGTCTATCTCTGTTACCCCGCA
CCACAACCTCCCAAAAATATATCAACACTATATCAACACTGCCCCATTTT
GCATTGTTGTACCTTGCCGACGTTGTTAATGTGGGGATTCCCCAATTGAA
GCAACAGCTGATGTAACGCATCTCATCTGCATTGCTTGTCCGAATACAAT
AAATAAGGAATCATGGAAAACGGAGCGAAAATGGCCAAGAAATGGGTAAA
AAAACAGTTTACCACATATTGCATAACCTTGGTCGTACTCCATGCAGATC
TTTGTGACACTAGAACTTGCTAGAATTGCATTATTTTTTAATCGAACTTT
TTCGTACATTATCTCGCTCACTATGCCAATATAGTAGCGTTGGGAAATTT
GTTTTTTTGTATTGAAATTTATATCTCTACATGCCATTTCTCCCGTTTTT
CTCGATTTTTTCGCCGAATTCCCTTTTTGTCCGCTGGCCTTGCAACAGAA
GTTTAAGCCCTTGTATAGACAAAGCCTATGCGATAATTCATGTCACTTTT
CTCATCGTGGATCTCGAGATATGGCATCGGATCTAATATTATGTCGCTCT
ATAGTAGGTTGAAAGCGTAATTTTACTCGGCCACCAGTTGTCCGTCAATG
GCATCCGCCACCCTGCACAGTATCATGCGTCTGACCTTACTGGCTCTGGA
TACTCTTGACGTGTTACCTTATGTCTACAAAAGTTTACACTCGCCTACTT
ATTCCTTGCCTGTCTGTGTATACCTCTGTAACATACGTCGTTGAGCGTCT
CCATGTTCACTCAGTGCTTGTATACATTGCGCAAGTGCGACCTTTCCACG
TTCCCATGCCTCTTTCCGTCACTTTTACCGACAGACTCCGGGACGAGGAA
GAGAGGAAAGAAAGTTCGAGCTCGCGGCAACGCGAATCATGCCGATCACC
CAGAGCCAGGGGCGATGAACCCGGTGGAGGGGTGATGGACGGTTTAACCT
TGGATGACGAATTGCAACAAGGCGTAGATGACGGAAAAATTGACGGAAAT
ACTCCTCACAGGGGAACAGCGACAAGTCTCCACTACCGTCGACCAGCGGT
ATCACCACGATGTGCACGGGATAACAGCGATGTCAGCGGGTGTGGCGGTG
GCCATAGCGCGCCGGGCGAACTCGAACTGCCCCATCGACACTCGCAGGCG
GAGCACGAAATTTTGATGAACGGTTTCGGGATCATGAACAAGTTCGGGAA
GATTGATGACAAGGATTTGGAGTGTATGGGGGATGACGATGACGGAAACT
TCGAAGACGAATTTGATCCCATCCTTGCATCCATACGGAAACCCCCACAA
CCATCGCCGACCGCGTCTTGTGCATCGTCGTCGACCGTCGGAGGTGGGTC
CAAGAATTCCTCGTCCCCTGGCAAAGGCGGTATCTCCGAGGGGGGGGATC
GAGGCAAGCGACACGACTCAGGCGTTTCTTTCGGTACGGGGCTTCGTTCG
ATCTTTCCCCGGAACGTACGCGCACGGGCGGAGGATGTGGTAACTCAGTC
CTCCGCTAACATGTCCAAGACGGCCGGCGCTTTCCGCGTGGCCTTTGGAT
TGGGTGTCAACGGCACGGGTGGCACGGGGTGGAGGCGAGATTCTAGTACA
GGAATGGTAAGGGAAGAGGGCAGAGAGAAAGATTTGGGGACGATTTCTTC
TGCCAGGCGGGTGGGGTTAGGAGGAGGGAAATGTTCAGGTTTAGGAGGGG
AGGAAGACGTTCTGGTGCTGGACGCGAACGAACTGCTCAGCGAGGAGGAG
GTGATATCCGGCACGGCTGTTGGTAGCGTGGGGACCCGGTGATTGTTAGT
CCTTTCGGCGCCCGTTGTTCTCAGGATTGATAACACCTTTTTCGGTTTTG
TGGACACTGTTCTTCGGTGTGTTGGAGGTTTGTAATTCCGAACTTGAAAC
AGGTGCCTACTTTCCTGGTGTGCTGCTGTGTAAACCTGTGCCTGGTAGCG
GGGACAGTCAGGTTAAGACAGTTTTTTAAACACAAGTCAGAGTTCGTCAA
TTTCCACGTACAGCTGTGTTGACGAGAACGACCCTGCCATACGTTCCATA
CCTGTTCCATGTCCGCAGCCAGCGAAGTATAGGCAGCAATCTCCATGCAG
GGTTAAAACTGTACGGAGTATACGCCTGTTAACCCAGACTACCACCTTTT
TTTTTGTCGCACTACGTGTATGTAATATTGGTCATGTGGATTTGACAGAG
ACGACAACTCGCGACCATATCGGGAGGGGGGGGAGGGAGATTTTGTGGAT
GGCGACGGCTCCGAAAGTATGCGCCCATCGTTGCAGGTGAGAAAAAAAAT
AATGCAGCGAACCGTTTATACAGCTCGTTGCCGTTGCTCATCGTGGTGTG
TTCTCTTGCACGATACGTCACACGCAAGAAATAAATAGCCGTCGACAATT
TAGGAAGCAAACCTCAAACGACCAAACGATGGACTCCCTAACGATCAGTC
GTGAATAGTGGCGAATTTGTCTGCAGTTTGCCCAAAGCAGCTCCAGGCAA
CTAGTTGTAGCATATCATCCAAAAGTGATTTTTGTCCTTGCCCATTGCAG
CCTTTTCCTCTTGGTTTAGAGCAAGAGCAAGTAAGTATTGGGCTTGTTCG
GTAACGATCAAATAATATGCGAGCCCTTCATATAGCTGATTAGGCAACAT
CGGCTGACTCCCCAAGAGTTCGATTCATTTTTTCCGGCATTTTGGGTGAT
TTTGCAGGTGTAGCACTTTTCAGCGCTATATATCTTTGGCGATGGAAAGC
CTTGCCAGAAGACGTTGCCGGTGTCGCTGGAGAAGCGGGCGAAGAAGCCG
CTGCTTTGGGCCCGGGGCGGATATAAGGCCGCTATTTCCTGCCGTCCTTC
GTCAACCTTTGCTAAAGTTTTCGGGGGCGTGATGTTACTCGAACGGGAGC
GATGAGCGTTGTGTGAGATTTTTAGTATTTCTACTCCAGGGTAGATTGAA
TTGGTGGCGTACTTTTCGGTGGTGTTACTTGTTATTGATACTACTGCGCA
ATCACTATACACACTTTTACGGTGCCCTTGATGTATGCCAGACGTGATGC
GTATTGCTGGGGAATTCAGTATTGCGTATCATGGGGGGCTCATTCACTCG
CGGTATTTAGGGTGCATCATGGCCTGTCATCTAGCCTGCTGCTTTGGGGA
TTCTTCCACTAGTGTGGTTCAATTCCTTGAACGAAGGTCTGCCCGCCGGA
AACTTTTACGAGCTGCTGTTGATCACTGTGAAGTGAACCGATGACATCTT
TGCGTTCAAGTTAACGTTTTATTTAGTTTATGATACCTATACTTTTAGTT
GATATTTCGTGCAATGTTGCATACTGCGACTAGAGGACAGATATTAACCC
TTTCCAGTCCTCGAGCGCTATATTGCGACGCACGGAATCTCTCAATCCCG
TGAGGCACGAATTATTTGGCCCGATGAAATCAGACCTGTTTATCGACACT
ATCGGAAAAGAGTGAAGTTAAGTGCGATGTGTTTAAAAAGTATTATTGAA
AAATGCATAGGAAATTAGTATAGCGGGTTGCGAGGGCTGTTTCCTGCAGC
CGCAACATAGTGTGCTTAGAGTGTGGAGGTAGTACAGCTCACAGACTGCA
GTAAACATACTGGTTCGATCGATCTAGCGATGGCAGCCAGCTGAACAGCG
GAAACAGAATAATGCAGCAGAGTTGCGCAAGGAGCATCGCGTCTGTGCAG
TGATACCGAAGTTGCTGCAACGCGTTGAACAGAGGAAGAGAAGTTGGCGA
CCATCAGCATTTCCCGAGAGTTTTGTAGCAGTATCTGCTAGTGTGGTGTT
ATGCTATATATGATGGTACTCATAAATACAGCAGCAGACTGCTACCTCTC
CTCCCTGTGTACTACCACTGCTGCACAGTTCGGATTTTCAGACAGAAAAA
TATTCGATTTTCCTCGTGTGACCATTCGATAAATTGTTGTAACTTTTGGA
TGAAAATGGGCTATCGGAATTCATGTGGTACTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2881:6683..12316- >mRNA_H-paniculata_contig2881.7852.1 ID=mRNA_H-paniculata_contig2881.7852.1|Name=mRNA_H-paniculata_contig2881.7852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2424bp|location=Sequence derived from alignment at H-paniculata_contig2881:6683..12316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAATGTTCTAGCCTCCAAACTTGGGGAGGTTCAGGCATTTGCCGA
TGGCTTGGGTAATCCCTTGGAGGCTCTCAGCATGGACAGATGTTCAATGT
TCTAGCCTCCAAACTTGGGGAGGTTCAGGCATTTGCCGATGGCTTGGGTA
ATCCCTTGGAGGCTCTCAGCATGGACAGACTCCGGGACGAGGAAGAGAGG
AAAGAAAGTTCGAGCTCGCGGCAACGCGAATCATGCCGATCACCCAGAGC
CAGGGGCGATGAACCCGGTGGAGGGGTGATGGACGGTTTAACCTTGGATG
ACGAATTGCAACAAGGCGTAGATGACGGAAAAATTGACGGAAATACTCCT
CACAGGGGAACAGCGACAAGTCTCCACTACCGTCGACCAGCGGTATCACC
ACGATGTGCACGGGATAACAGCGATGTCAGCGGGTGTGGCGGTGGCCATA
GCGCGCCGGGCGAACTCGAACTGCCCCATCGACACTCGCAGGCGGAGCAC
GAAATTTTGATGAACGGTTTCGGGATCATGAACAAGTTCGGGAAGATTGA
TGACAAGGATTTGGAGTGTATGGGGGATGACGATGACGGAAACTTCGAAG
ACGAATTTGATCCCATCCTTGCATCCATACGGAAACCCCCACAACCATCG
CCGACCGCGTCTTGTGCATCGTCGTCGACCGTCGGAGGTGGGTCCAAGAA
TTCCTCGTCCCCTGGCAAAGGCGGTATCTCCGAGGGGGGGGATCGAGGCA
AGCGACACGACTCAGGCGTTTCTTTCGGTACGGGGCTTCGTTCGATCTTT
CCCCGGAACGTACGCGCACGGGCGGAGGATGTGGTAACTCAGTCCTCCGC
TAACATGTCCAAGACGGCCGGCGCTTTCCGCGTGGCCTTTGGATTGGGTG
TCAACGGCACGGGTGGCACGGGGTGGAGGCGAGATTCTAGTACAGGAATG
GTAAGGGAAGAGGGCAGAGAGAAAGATTTGGGGACGATTTCTTCTGCCAG
GCGGGTGGGGTTAGGAGGAGGGAAATGTTCAGGTTTAGGAGGGGAGGAAG
ACGTTCTGGTGCTGGACGCGAACGAACTGCTCAGCGAGGAGGAGACTCCG
GGACGAGGAAGAGAGGAAAGAAAGTTCGAGCTCGCGGCAACGCGAATCAT
GCCGATCACCCAGAGCCAGGGGCGATGAACCCGGTGGAGGGGTGATGGAC
GGTTTAACCTTGGATGACGAATTGCAACAAGGCGTAGATGACGGAAAAAT
TGACGGAAATACTCCTCACAGGGGAACAGCGACAAGTCTCCACTACCGTC
GACCAGCGGTATCACCACGATGTGCACGGGATAACAGCGATGTCAGCGGG
TGTGGCGGTGGCCATAGCGCGCCGGGCGAACTCGAACTGCCCCATCGACA
CTCGCAGGCGGAGCACGAAATTTTGATGAACGGTTTCGGGATCATGAACA
AGTTCGGGAAGATTGATGACAAGGATTTGGAGTGTATGGGGGATGACGAT
GACGGAAACTTCGAAGACGAATTTGATCCCATCCTTGCATCCATACGGAA
ACCCCCACAACCATCGCCGACCGCGTCTTGTGCATCGTCGTCGACCGTCG
GAGGTGGGTCCAAGAATTCCTCGTCCCCTGGCAAAGGCGGTATCTCCGAG
GGGGGGGATCGAGGCAAGCGACACGACTCAGGCGTTTCTTTCGGTACGGG
GCTTCGTTCGATCTTTCCCCGGAACGTACGCGCACGGGCGGAGGATGTGG
TAACTCAGTCCTCCGCTAACATGTCCAAGACGGCCGGCGCTTTCCGCGTG
GCCTTTGGATTGGGTGTCAACGGCACGGGTGGCACGGGGTGGAGGCGAGA
TTCTAGTACAGGAATGGTAAGGGAAGAGGGCAGAGAGAAAGATTTGGGGA
CGATTTCTTCTGCCAGGCGGGTGGGGTTAGGAGGAGGGAAATGTTCAGGT
TTAGGAGGGGAGGAAGACGTTCTGGTGCTGGACGCGAACGAACTGCTCAG
CGAGGAGGAGAGACGACAACTCGCGACCATATCGGGAGGGGGGGGAGGGA
GATTTTGTGGATGGCGACGGCTCCGAAAGTATGCGCCCATCGTTGCAGAG
ACGACAACTCGCGACCATATCGGGAGGGGGGGGAGGGAGATTTTGTGGAT
GGCGACGGCTCCGAAAGTATGCGCCCATCGTTGCAGGTGTAGCACTTTTC
AGCGCTATATATCTTTGGCGATGGAAAGCCTTGCCAGAAGACGTTGCCGG
TGTCGCTGGAGAAGCGGGCGAAGAAGCCGCTGCTTTGGGCCCGGGGCGGA
TATAAGTGTAGCACTTTTCAGCGCTATATATCTTTGGCGATGGAAAGCCT
TGCCAGAAGACGTTGCCGGTGTCGCTGGAGAAGCGGGCGAAGAAGCCGCT
GCTTTGGGCCCGGGGCGGATATAA back to top
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