mRNA_H-paniculata_contig28801.7850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28801.7850.1
Unique NamemRNA_H-paniculata_contig28801.7850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28801.7850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28801contigH-paniculata_contig28801:317..2639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size546
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28801.7850.1prot_H-paniculata_contig28801.7850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28801 2248..2583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.9130626-UTR-H-paniculata_contig28801:316..3701622929876.9130626-UTR-H-paniculata_contig28801:316..370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 317..370 +
1691481050.860371-UTR-H-paniculata_contig28801:316..3701691481050.860371-UTR-H-paniculata_contig28801:316..370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 317..370 +
1622929876.930734-UTR-H-paniculata_contig28801:2147..22471622929876.930734-UTR-H-paniculata_contig28801:2147..2247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 2148..2247 +
1691481050.8697872-UTR-H-paniculata_contig28801:2147..22471691481050.8697872-UTR-H-paniculata_contig28801:2147..2247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 2148..2247 +
1622929876.9629002-UTR-H-paniculata_contig28801:2583..26391622929876.9629002-UTR-H-paniculata_contig28801:2583..2639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 2584..2639 +
1691481050.8942885-UTR-H-paniculata_contig28801:2583..26391691481050.8942885-UTR-H-paniculata_contig28801:2583..2639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28801 2584..2639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.9469967-CDS-H-paniculata_contig28801:2247..25831622929876.9469967-CDS-H-paniculata_contig28801:2247..2583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28801 2248..2583 +
1691481050.8805823-CDS-H-paniculata_contig28801:2247..25831691481050.8805823-CDS-H-paniculata_contig28801:2247..2583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28801 2248..2583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28801.7850.1

>prot_H-paniculata_contig28801.7850.1 ID=prot_H-paniculata_contig28801.7850.1|Name=mRNA_H-paniculata_contig28801.7850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MEYRPCVGTMSVILNSDGFVIFRRETARHREELRAEASALALVHQAAREM
RTAVDKAFTEAKHAYAKCADIEARRRREAAAAQADEIAFAFRRIVPIYFP
PPCLLMLALPL*
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mRNA from alignment at H-paniculata_contig28801:317..2639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28801.7850.1 ID=mRNA_H-paniculata_contig28801.7850.1|Name=mRNA_H-paniculata_contig28801.7850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2323bp|location=Sequence derived from alignment at H-paniculata_contig28801:317..2639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCACACAAACGTTTGGGTTAGGCGTCATAGAGAACTGGGAGAGCTAAT
AAACGTGAGTCTTAGAGGATAACTATAACCAATAGTCTACGTGTGAATGA
TATCACAGAGAGGTATAGGAGCCTCATCACAATTGGCCTTGTCTACCGTT
TTGGTTATTGAGTCCTTAGACTGTTTAGCGTGCTCTCCTAATCTCGCAGA
GCCTCACATTGTTATATACCAAGTTGCCTTTTGCGGTTGTCTTTTCTTGT
GTGAGGCAGACCCCACGCACCTGTAATGCAGGGCCTGCACGTCTACTGTC
TTTTGTGACTACTTGCTGACTTGAAACGCACTGCTTGATTGCTTATTCGG
TGCATATCGCCACCTGCTTGTTAGTCTACGTTGCTGACAACATTTCTGGG
TGTTTTTTCCGGGTTACTGACAGCATTTCTGTCTGTGTTTTACTAGGGTA
CTGACAGTATTTTGTTTGTGTGCTTCGACTTGATTACTCAGATTTTGTCG
ATTGACTGCCTTTAATTCCGATCGTCTATTCTGGTCTTGTTTCGGGTTTT
CACAAGTGTTCCACGTTCAACAACACTGTGCTTTGATCAGGTTCAGACCA
CTTGTCTGCCGCATCGATAATTTTTGTTGCAGCCGCCTTCTGTGTGAACC
GCTGCATCGCTAGATCGATCCGCTGTTGTACTGTCACAATGTTTTTCGTT
TTTCGTCACTTTGCCATTTTCAGCCACCACGCGCAGTGTTTGTCGTCCAT
TGCCACACGTGAAGTTAGGTTTGCTTGGACGTGCACACCACTGCTTGCTG
TTTGCAATTGAACGAAACTGAAACTGTACTGCACACCTTGAACTGCATAA
TGTTTGTGTACAATCGTAAGAACTGTCAACACTTGCGTGTTTTGTACCGT
TGCTCCACGCTGACTGTAGCAGCCGCAGCCACCTTGATCAATTTTGGCAT
TCTATAAACCGGTTGTATAGATTATGTACAGCCCTAAACACAGTTTGACT
GTCCAGCGCGATCAGCGCGCACGGCTCCGTTCGTTACGTTTGCTCGGTTT
CAATGCAGTATCTGAGGGGAAACATCAGATGACGCTTCGAAACTTGCCCT
TGCCCCCCCCCGCATCACGGGCCACAAGCAATGCCACCACGTTGTCTTCT
ACTCATAACACTTGGGCACTTATCGAGGCCCCCCCCTCTTGAAGGATCGC
ACTCGATGATGCCGCGCCTGACTACCGAGGCATTACTGTCTGTTTCTACC
CCACCCGGGTGTCGGACTGAACATATCAACCACACATTGTATTTTAAGCT
TGTAGATTTAATTGCACCTAAACCCACCGATGGTGCGGCCTCTATGTCGA
TCACTGACGTTGCGCAAAATTGCTTGTACAAAGATCCGACACGAGGGAAA
ACTCCGTGTCGACAGCAGTTGGAAGTCTTGCTTTCTGCAGATGTATCAGG
TTCAGGTTCGCACAATGACACCTACACCCCTGACGAACAGCCGACCCAAC
GCTAGGTATCGTGGCAACCCTCTCCGAGTGCCCCTTCGATCCCGACAACA
GATCCGTTGTCCTATCGAGGCTCATCATGAACTGAATTAGCGGACTCTGG
GCGAACTGCGCCTTCCCCATCTGTGCCGTCTATGGCTGCTGTGCAAGCCC
TCATCAAGATTTAGCATCGGGCCGACGATTATTGACACCGCATATCCCTC
ACTTGGCGAGCAACACCATGTCCACTACGAGCACCACTAATGCTGCCTCT
TCCGAGTCATCTCCACTGGAGAGATACACGTCCCATAAATAGCCCCCACC
GCTTCCGCTATCGCGCCTTTTGTGAGCGCAGCTGCCACTACGTCGGCCTT
CCCTCCCGTTCGTCATCACCCCGGAGGAAGCTTCCCTCCGATGTGAAATG
GCTGCTCTGCCGGTAGATATCCGTAGACCTGATGGAATACCGGCCATGTG
TTGGGACAATGTCAGTGATACTGAACAGTGACGGTTTTGTCATATTCCGG
CGGGAGACCGCCCGTCACAGGGAAGAACTGCGGGCTGAGGCGTCAGCTCT
CGCGCTGGTCCATCAAGCCGCTCGCGAGATGAGAACGGCCGTCGACAAGG
CATTCACGGAAGCCAAACATGCCTACGCCAAATGTGCAGACATCGAGGCA
CGCCGACGGCGTGAAGCTGCGGCGGCGCAAGCAGATGAGATTGCATTCGC
ATTTCGGAGGATTGTACCGATATACTTCCCTCCGCCTTGTTTGCTCATGC
TCGCGCTACCGCTATAGACGTGGCAAATACAGGAGCACGTAAGGCCGCAG
AAATATTACAGGCACAAACGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig28801:317..2639+

>mRNA_H-paniculata_contig28801.7850.1 ID=mRNA_H-paniculata_contig28801.7850.1|Name=mRNA_H-paniculata_contig28801.7850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig28801:317..2639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATACCGGCCATGTGTTGGGACAATGTCAGTGATACTGAACAGTGA
CGGTTTTGTCATATTCCGGCGGGAGACCGCCCGTCACAGGGAAGAACTGC
GGGCTGAGGCGTCAGCTCTCGCGCTGGTCCATCAAGCCGCTCGCGAGATG
AGAACGGCCGTCGACAAGGCATTCACGGAAGCCAAACATGCCTACGCCAA
ATGTGCAGACATCGAGGCACGCCGACGGCGTGAAGCTGCGGCGGCGCAAG
CAGATGAGATTGCATTCGCATTTCGGAGGATTGTACCGATATACTTCCCT
CCGCCTTGTTTGCTCATGCTCGCGCTACCGCTATAGATGGAATACCGGCC
ATGTGTTGGGACAATGTCAGTGATACTGAACAGTGACGGTTTTGTCATAT
TCCGGCGGGAGACCGCCCGTCACAGGGAAGAACTGCGGGCTGAGGCGTCA
GCTCTCGCGCTGGTCCATCAAGCCGCTCGCGAGATGAGAACGGCCGTCGA
CAAGGCATTCACGGAAGCCAAACATGCCTACGCCAAATGTGCAGACATCG
AGGCACGCCGACGGCGTGAAGCTGCGGCGGCGCAAGCAGATGAGATTGCA
TTCGCATTTCGGAGGATTGTACCGATATACTTCCCTCCGCCTTGTTTGCT
CATGCTCGCGCTACCGCTATAG
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