mRNA_H-paniculata_contig2879.7846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2879.7846.1
Unique NamemRNA_H-paniculata_contig2879.7846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A6H5JXI4_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXI4_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 2.280e-107
Identity = 145/204 (71.08%), Postives = 169/204 (82.84%), Query Frame = 1 
Query:  241 MPPRSDTAIGARDDLQQSSSPSLQKEDFKRKPNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            MPPRSDTAIGA DD    S+ S+ + +   + +L  +R Q+P+ECF KSL RSLFYM RDMGCV+ALQ++YP YVAG+WPLT  WWNANGFMLW LFV+GHDCGHTTFSNYPW+NA+ GHLCHAPL VPFWPWAKSHNEHHKYHNHV KDMSYPWFG++QF+ E+    K +L+TPFHPFTSYLF+YL AG+YDGSHFNP   L
Sbjct:    1 MPPRSDTAIGANDD----STSSITRPNKDVRVDLMALRKQVPEECFIKSLPRSLFYMARDMGCVLALQYLYPIYVAGSWPLTFLWWNANGFMLWALFVIGHDCGHTTFSNYPWVNALVGHLCHAPLLVPFWPWAKSHNEHHKYHNHVEKDMSYPWFGKQQFEQEVKPFTKLFLKTPFHPFTSYLFTYLLAGWYDGSHFNPFSVL 200
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A835YPJ0_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ0_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.280e-85
Identity = 119/193 (61.66%), Postives = 143/193 (74.09%), Query Frame = 1 
Query:  283 LQQSSSPSLQKED---FKRKPNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            LQQ+  P + K D    K K  +  ++  IP ECF KSL +SLFYMVRDMG + AL   YP YV GNWPLT  WWNA GFM+W LFVVGHDCGHTTFS Y W+NA+CGHLCHAPL VPFWPWA+SH++HH YHNHV KD S+PWF +EQ+ T+++ + +  L+TP HP  SY  SYLF G++DGSHFNP G L
Sbjct:    9 LQQADPPGVLKRDPMAVKDKLRMDVLKRIIPDECFHKSLVKSLFYMVRDMGLICALWKAYPVYVEGNWPLTFVWWNAMGFMMWALFVVGHDCGHTTFSEYTWVNAVCGHLCHAPLLVPFWPWAQSHHQHHSYHNHVEKDHSFPWFRKEQYATQLSGVGRTILKTPLHPLFSYGVSYLFFGYWDGSHFNPFGSL 201
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A1S7C7R3_9STRA (Om n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1S7C7R3_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.980e-61
Identity = 94/174 (54.02%), Postives = 114/174 (65.52%), Query Frame = 1 
Query:  334 PNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAG-NWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            P LS+I+  IP++CFQKSL RS +YM+RD   + AL  VYP   A    P    WWN  GF +WCLFV+GHDCGH +FS Y W+N ICGH+CHAPL VP+WPW KSH  HH YHNH+ KDMS+PW  +E F+ ++T   +  L  P   F  Y F YLFAG  DGSH  P   L
Sbjct:    7 PTLSQIKKAIPEKCFQKSLLRSFYYMLRDFAALAALYFVYPTVQAKYGLPGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWLNDICGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTKEVFE-DLTPFEQALLENPLSLFIKYTFLYLFAGKMDGSHVVPFSPL 179
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: I2CR09_NANGC (Glycerolipid omega-3 fatty acid desaturase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR09_NANGC)

HSP 1 Score: 204 bits (519), Expect = 3.390e-59
Identity = 92/175 (52.57%), Postives = 116/175 (66.29%), Query Frame = 1 
Query:  334 PNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLT--IAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            P LS+++  IP++CFQKSL RS++YM+RD   + AL  +YP  V  N+ L     WWN  GF +WCLFV+GHDCGH +FS Y W N +CGH+CHAPL VP+WPW KSH  HH YHNH+ KDMS+PW  +E F+ ++T   +  L  P   F  Y F YLFAG  DGSH  P   L
Sbjct:   57 PTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPS-VQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE-DLTPFEQALLENPLSLFIKYTFLYLFAGKLDGSHVLPTSPL 229
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A7S4PZI0_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4PZI0_9DINO)

HSP 1 Score: 201 bits (510), Expect = 1.290e-58
Identity = 88/173 (50.87%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:  334 PNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            P++ E+RA IP  CF KSL RSLFYM RD   +    + Y  + A  W     +WN  GF +WCLFVVGHDCGHT+FSNY W+N +CGH+CHAPL VP+WPW +SH+ HH YHNH  KD S+PW  R+Q   ++  I    +  P   F  Y + YL AG  DGSHF+P  +L
Sbjct:   45 PSMKELRAAIPSHCFVKSLPRSLFYMFRDFLAIGLCVYFYDNFKALGWTGLFIYWNLAGFFMWCLFVVGHDCGHTSFSNYGWLNDLCGHICHAPLMVPYWPWRRSHHLHHSYHNHTDKDKSHPWM-RQQDWAQLNAIQAAGMECPLFAFVGYTWIYLLAGICDGSHFSPFSKL 216
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A6V1NJB0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NJB0_HETAK)

HSP 1 Score: 196 bits (497), Expect = 6.490e-57
Identity = 86/173 (49.71%), Postives = 110/173 (63.58%), Query Frame = 1 
Query:  334 PNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            P+L E+RA IP  CF KSL RSLFYM RD+  +    + Y  + A  W     +WN  GF +WCLFVVGHDCGHT+FSNY W+N +CGH+C+APL VP+WPW +SH+ HH YHNH  KD   PW  +EQ   ++  I    +  P + F  Y + YL AG  DGSH +P  +L
Sbjct:   25 PSLKELRAAIPSHCFVKSLPRSLFYMFRDLVAICLCVYFYDTFKALGWSGLFIYWNLTGFSMWCLFVVGHDCGHTSFSNYGWLNDLCGHICNAPLLVPYWPWKRSHHLHHSYHNHTEKDKGRPWI-KEQEWAQLNAIQTAAMECPLYAFFGYTWIYLLAGIRDGSHLSPFSKL 196
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: W7TW53_9STRA (Fatty acid desaturase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW53_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.950e-54
Identity = 75/133 (56.39%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:  334 PNLSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLT--IAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFD 726
            P LS+++  IP++CFQKSL RS++YM+RD   + AL  +YP  V  N+ L     WWN  GF +WCLFV+GHDCGH +FS Y W N +CGH+CHAPL VP+WPW KSH  HH YHNH+ KDMS+PW  +E F+
Sbjct:    7 PTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPS-VQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A7R9YMG6_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YMG6_DIALT)

HSP 1 Score: 178 bits (452), Expect = 2.860e-50
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 1 
Query:  340 LSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYPQYVAGNWPLT-IAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            L +IR  IPQECF K   RSL+++ RD+  +     VYP   A   PL  +A+WN  GF +W LFVVGHDCGHTTFSN   +N +CGH+ HAPL VP++PWA SH  HH YHNH  KD S+PWF +     ++    + +L++P  PF +Y   YLF G +DGSH  PL +L
Sbjct:   26 LQDIRKVIPQECFVKDTGRSLWFLARDLAVLATAPLVYPHVAASANPLLYLAYWNFYGFFMWALFVVGHDCGHTTFSNSKLLNDVCGHIAHAPLLVPYYPWAMSHRRHHMYHNHQKKDASHPWFTKASMP-KLPAFTRSFLKSPLAPFLAYPI-YLFEGSFDGSHVFPLSKL 195
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A811KVY1_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811KVY1_9BILA)

HSP 1 Score: 164 bits (414), Expect = 2.060e-44
Identity = 81/193 (41.97%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:  301 PSLQKEDFKRKPN------LSEIRAQIPQECFQKSLTRSLFYMVRDMGCVMALQHVYP---QYVAGNWPLTIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNPLGEL 852
            PS+QK+   +KP       L E+R  IP ECF+K   +S+F++V D   +  L +  P   QY  G WP  + W+   G   + LFVVGHDCGH TFS Y W+N I GH+ HAP+  P+WPW KSH +HH+Y +H+ KD  +PW+ +E++  E   I +F+ + P   F  + F YL  G  DGSH+ P  +L
Sbjct:   17 PSVQKQSEVQKPQPPNLPTLEELRKAIPPECFEKDWRKSMFFLVWDYAVIAGLYYALPYIEQY--GGWPGLLVWYYVVGMFGFSLFVVGHDCGHGTFSEYTWLNDIIGHVAHAPILAPYWPWQKSHRQHHQYTSHLEKDKGHPWYTQEEYVQEPWVIQQFF-KFPLSAFVRWNFVYLTLGLPDGSHYWPYSKL 206
[Close]
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Match: A0A482S5W1_9ARCH (FA_desaturase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5W1_9ARCH)

HSP 1 Score: 158 bits (399), Expect = 4.020e-42
Identity = 80/183 (43.72%), Postives = 109/183 (59.56%), Query Frame = 1 
Query:  337 NLSEIRAQIPQECFQKSLTRSLFYMVRDM----GCVMALQHVYPQYVAGNWPL------TIAWWNANGFMLWCLFVVGHDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKDMSYPWFGREQFDTEMTRIAKFWLRTP----FHPFTSYLFSYLFAGFYDGSHFNPL 843
            NL+E+R  IPQE FQKSL +SLFY+  D     G ++A+  +    +    P       +I +WN  GF +WC+FVVGHDCGHTTFS + W+N I GH+ H  L VPF+PW  SH  HH YHNHV+KD SY W+ ++  ++E ++  + +   P    F PF  +    L AG  DG HF P+
Sbjct:   34 NLNEMRNYIPQEAFQKSLPKSLFYLGFDYTMWGGALLAIHTLVNSTLWPTLPFWLQGLASILYWNVAGFFMWCIFVVGHDCGHTTFSKHTWLNNIIGHITHGSLLVPFFPWQLSHRRHHMYHNHVNKDYSYAWYTQDMLESEESKHMQLFHELPIVSFFLPFYGWFIYLLGAG--DGCHFLPI 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2879.7846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXI4_9PHAE2.280e-10771.08FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A835YPJ0_9STRA1.280e-8561.66Fatty acid desaturase n=1 Tax=Tribonema minus TaxI... [more]
A0A1S7C7R3_9STRA6.980e-6154.02Om n=1 Tax=Nannochloropsis oceanica TaxID=145522 R... [more]
I2CR09_NANGC3.390e-5952.57Glycerolipid omega-3 fatty acid desaturase (Fragme... [more]
A0A7S4PZI0_9DINO1.290e-5850.87Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A6V1NJB0_HETAK6.490e-5749.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TW53_9STRA7.950e-5456.39Fatty acid desaturase n=1 Tax=Nannochloropsis gadi... [more]
A0A7R9YMG6_DIALT2.860e-5049.42Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A811KVY1_9BILA2.060e-4441.97Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A482S5W1_9ARCH4.020e-4243.72FA_desaturase domain-containing protein n=1 Tax=ar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2879contigH-paniculata_contig2879:14758..19466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.6
Seed ortholog evalue2.7e-82
Seed eggNOG ortholog2880.D7FSC6
Preferred nameFAD2
KEGG rclassRC00917
KEGG koko:K10256,ko:K10257,ko:K21704,ko:K21710,ko:K21736
KEGG ReactionR11043,R11044
KEGG Pathwayko01040,ko01212,map01040,map01212
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002376,GO:0003674,GO:0003824,GO:0004497,GO:0004768,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016215,GO:0016491,GO:0016705,GO:0016709,GO:0016717,GO:0016720,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0040002,GO:0040012,GO:0040017,GO:0042175,GO:0042335,GO:0042389,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045485,GO:0046394,GO:0048518,GO:0048856,GO:0050183,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:0072330,GO:0098827,GO:1901576
EggNOG free text desc.oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
EggNOG OGs2QQNB@2759,COG3239@1
EC1.14.18.4,1.14.19.16,1.14.19.22,1.14.19.25,1.14.19.33,1.14.19.34,1.14.19.35,1.14.19.36,1.14.19.6
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons3
Model size852
Cds size612
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2879.7846.1prot_H-paniculata_contig2879.7846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2879 14998..19466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.1007617-UTR-H-paniculata_contig2879:14757..149971622929876.1007617-UTR-H-paniculata_contig2879:14757..14997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2879 14758..14997 +
1691481050.4504619-UTR-H-paniculata_contig2879:14757..149971691481050.4504619-UTR-H-paniculata_contig2879:14757..14997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2879 14758..14997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.1165452-CDS-H-paniculata_contig2879:14997..151281622929876.1165452-CDS-H-paniculata_contig2879:14997..15128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 14998..15128 +
1691481050.4629018-CDS-H-paniculata_contig2879:14997..151281691481050.4629018-CDS-H-paniculata_contig2879:14997..15128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 14998..15128 +
1622929876.1294403-CDS-H-paniculata_contig2879:16064..162311622929876.1294403-CDS-H-paniculata_contig2879:16064..16231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 16065..16231 +
1691481050.4724832-CDS-H-paniculata_contig2879:16064..162311691481050.4724832-CDS-H-paniculata_contig2879:16064..16231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 16065..16231 +
1622929876.1447537-CDS-H-paniculata_contig2879:19152..194661622929876.1447537-CDS-H-paniculata_contig2879:19152..19466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 19153..19466 +
1691481050.4819615-CDS-H-paniculata_contig2879:19152..194661691481050.4819615-CDS-H-paniculata_contig2879:19152..19466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2879 19153..19466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2879.7846.1

>prot_H-paniculata_contig2879.7846.1 ID=prot_H-paniculata_contig2879.7846.1|Name=mRNA_H-paniculata_contig2879.7846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MPPRSDTAIGARDDLQQSSSPSLQKEDFKRKPNLSEIRAQIPQECFQKSL
TRSLFYMVRDMGCVMALQHVYPQYVAGNWPLTIAWWNANGFMLWCLFVVG
HDCGHTTFSNYPWINAICGHLCHAPLFVPFWPWAKSHNEHHKYHNHVHKD
MSYPWFGREQFDTEMTRIAKFWLRTPFHPFTSYLFSYLFAGFYDGSHFNP
LGEL
back to top

mRNA from alignment at H-paniculata_contig2879:14758..19466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2879.7846.1 ID=mRNA_H-paniculata_contig2879.7846.1|Name=mRNA_H-paniculata_contig2879.7846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4709bp|location=Sequence derived from alignment at H-paniculata_contig2879:14758..19466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATGTCTTCCTTTTATCTGAAACGCCTGAGCACCTGACAGGCCTTTCCA
CGCTGCGATCACCAGAGCTTACATACACACACCACAGGAATTAGGGAGTG
GGAGCTATATGTTGTTCTGACGTGAGACGTCGTCCTGGTGATCCACCCAC
TAGCACTGGTGCTTTCTTCGCTGAATTCCGTGCACGACACAGGCGCGGTT
ACAACAATTCAACGACTACGACTACAACCCTACAACCAGCATGCCCCCGA
GGAGTGACACAGCGATAGGCGCCAGGGATGACCTTCAGCAGTCGTCCAGT
CCCAGCCTCCAGAAGGAAGATTTCAAGCGCAAGCCCAACCTCAGCGAGAT
CCGAGCGCAAATACCCCAAGAGTGAGTGTCCCTACGAAGGATGATCTGGG
AGAGACAAGTCGTTGTGTCGTGTAGGTGTAGGCAAACGTGTTGCTGTTAT
TTTTTTCTACTGTTTTACAGAGCAACGTGCGGTGCCCTTTCATTCCTGTG
AGCACGTGTTACGCCGAATGTAGCAGAGCAAAAGCCAAGAGAGAAGTAAC
AAAGCAAATTGTTGCTTGTGCCCTGTCTTTGTGCAGACGACGATCACAGA
GTTGGGTTTTATGAATGCTAGCTGTATTGTGGAGTCTGATTGCGGTGGTG
ATGAGTCTCCTGTTCTGGCTTTCTGCAGCCTTGGGCAGATGCCATTGCCT
GTATTTCGTTGCGGAACCAAAAAATTAATCTACGGATACTGACTGTATGT
TGTACTGTAATTTTAATTATTGCTCCACCTGTGCGTCCAACTAACTTGGT
ATAGGATATACAAAGCACATGAACGTGAATGACACGTTTATCCCAAGTAT
GTAGTGGTTTTAGAGATGGTCAGCAGCATAGACAAAATCTCCAAAGCCCG
TCGCAGTCAGAGACTTAGTCTATTTGTATTAAGAACAGCACAAGGGTCTC
GTGCGTGTCGTCGGCGGAATCTAGGGTATAGTCCAAGTTGCTGACTGAAC
TGTGGTCACCCTCGTCCTGCCCACGGTGTATGCACGCTAGTATTTGAAAA
AAAAGAGATATATACGACGTAACTCGACTGTATCTAGTACTCAAGAGTCG
AAATGCCAAGGCCCACCTCATCCAACTTCACGGAAAACAGGGAAGATGAG
ATCATGACTTCGACGTGGTGACCGTATGTCCCACCCACGCCTGTGCTCAT
AATTTGTCATGACTCATCTACTCCCAGCCGACTATTTTACAACGGCTTTG
CCTGCCCCTCACGCTATAGATGTTCGCCATTATTGTGTGTTGTGTCTGGG
TACGCAGATGCTTTCAGAAGAGCCTCACACGCTCCCTGTTTTATATGGTG
CGTGACATGGGCTGCGTAATGGCCTTACAGCACGTGTACCCCCAGTACGT
GGCCGGAAACTGGCCCCTGACCATTGCTTGGTGGAATGCAAACGGCTTCA
TGCTGTGGTGTCTGTTCGTCGTCGGTGAGTAGACGTTGTCTGTGAGATCA
AATGATTCAGTTCAGATCAGATAAGTCATTCAACGAAATAGTAGACCAGA
TCGTCCGAGAAACGTTTGTGCGAAATTACTGCTGCACATATTGTAACTGT
ATCCAATGTATCCATGGTGTGTAAATACGTCAGATGCACCGGTGTGTCAC
ACGTGTCCAAGCCATGGAACAGTCTTCAGTTTCGAGCATTGTTTGAATCT
TGTTCGAATACTTTTGGCAGTCTACCCTGAGACCGAACAAATATGTGGAT
ATTTGTGTCGAGAACCCTACCGATTTTTCCTTTTTTCATAGTATTTCGGC
TAATAGCTGTCTGTGATGTACTGTCTGTGATGTACTGTCTGCACTCTGTA
TTCCTCACGACAGGGTCAAAGTAGCCTGTAGTACCGGTGATTTCATGGAT
TTGAGTGCCTCCTCTCGCATCGATGTAGGTGGTACAGGAATGACGACATG
AATAGTCGTGCTGTTCCACATACAGTAATTCACATGCAAACCGCCGCCCG
ATTGTACCCCCACGTCCTTGATGACATGTTTCATCTTGCGTCCTTCCGCT
CACGCCGAAAAGTGCCACCACTAGTATTGAGGATGAAAGTTCACGTACTT
TGGTGTATTTTCAAAAACAACCAGCCGAATGAGTTCCTGGGAATTTTTCG
CGAAAACTCCCAACGGATGTGCGTCGTTGAGCATCGTCGAAAACAAACAC
CCAACAACTGTAGTCAATGGGCGCTTTGCTAAAAGACGACGTTTTGGGTT
GGTATCCTTACCTTTTCTATCTGCTGCACGTCTCGTGTTCGTCGCGATTC
AACTCTTCTAATGCCCCTTGCAGGCTGATCTGATCTAAACTCCTACCCTC
GAATCTGTTACCAAGGACGTTTATTGTGACATGTGACGGGTGGACTGGGA
ATTCGCCACGTTTAGATGTAGTGGAGGCTTAGCCCGGATATAGTTCCACG
ATTTGAAGATTTTTGATCCAGTTTCTTGTTTCACACCGAATGTTAGGTTG
TGGACACCGACATGATAAAACTTGGTCATGATCAACAACTATTCGAGTAT
GACGCGTACAAACAAACGTAAGTGTGTTGCAATCTGAAATTGTGCGAAGT
GGTCCTTCATAGCTGTCTTGCTTATCGCAGTGATCTACTCACCTCACCCC
TGCCGATACCCTATTGACAAGATTGGTTGGGAGATTAGACCGCATGCAGT
CATACACCGCCATAGTTTCCCCTTAGTAAGGTCTGGTGGAGTGAAACTCG
GCAGGGGTGGTGTAACGCACTCGACTACGGTTTTCGAACAGGTTTACGGG
GGTGCAGTTCTGAGTTCATCCCCGAATTGCGGGTTTCTTGTGAACAACTA
TTGTCCACTTTCAGCCAGCGTGATAAACTCAAAGCCTTTCATCATTCTGT
AATTTAAAGGTCCAACCCTTTCAAATCAGAATGGTTGCATTGTGACAGAT
TTCCATGAGACATTGTTGACATTCCTGTGTTGTGTAAGACAGAAAGGGTT
AGGGAGGGCGTTTTCTTGGTGTGGGGTTGGATGGGGAGTACCGAATGTCG
ATGGACATGAGTGTTTTGGCCGGGGTGAGATCAGGTCCATATGTTGGTAG
CAAAATGAAGGACGAATCAGTGAGACTGCGAAGCTATTCTGGTGCAAAAG
AGAATGATTATTTTTACGGTACTCACGTACGTCTAGGCCTGGCCAAAGCA
GTCAACCCTGTGTGCTCGATGTTCAGGTACTACAACGAACAGACCGCAGT
ACGCATCTGGGTTTCATGGAGCTGTGGTAGCCAGCTGGACAGAGCACATA
GCACGATAACGTAGAGTTGTGCGGAACATACAGTAGTACTGCATGTAGTA
CAGGTGTACTCCAGCGTGCAGCAGCATATCTGCGGCCCATGATAGAGAGG
GGGAGCGAGGTGTCGGCACCGAAATATCCTGAGAGTTTCATAACGAGCGA
TGACTGATGCGTATGTAGTGTCTTGTTATGAGTGATAACACTACTTACAG
GCACAGCAACAGGTGACCAGCCACAGTCGTGGTAGTCGGAGCATGACAAC
ATTACTGATATATTTTGTAATTGGTGAACATGCGTTCGGGTTCCTTGAAC
GAAATTGTGGCATCCTGCCAACTTCTGGTGTGTGTACATTTGCGTAGAGT
GGTACTGCACTACTAATGTACAAAGTTAAACGTGGTCCGTAGATGATAGT
ATCGTACAGGAAACAGTGCAGCTGCATAATATCTCTATGATGATTTTTTT
CCCGCGTGTTGAGATAAGCACTGAAGGAGGGGGGCCGGTAGGTCGTTCGT
AGTCCCTGCTCGTACGAACGTTTTTAACAGTAGTAAAAGATGAATAATAT
TTCGGCTGTGTCTTGTGGCCGAGCATTACCGATAATGTATCCTCTCATAA
TTTTGTTCATGTTGAGGTACAGATAAGAGATTGCATTGCACCTGTATCTA
TCTATTTCCTGGAATACTAACGGTACATACAACTGTTTTGTAACACCCCA
CCACTGTAATGTTTTCACCTTGCCCCTTATGCAAATAAGGGTAATTGTCC
TCAACAGACGTTGGGTGACTATTACTCCTCGGAAGCTTTTTCTAAGGTGG
CCTCTACAGTTTCACGAATGTTTCGCACCCATCTGTACAAGGAAACAATT
TTAGAGTCAGTGTTTAGTAACACGATTCGACCTCAAAGAAGTATCATGAA
CGCCACACAGTTAATCATCTGATAAATCGAAATCATCTGATTGTTTCAGA
CACTAAAGCTTGATGGAAACTCCTTGCGGCGCGAAATAACTATCGTTCGT
GAGCGAAAACTCCCCGTAACTCCCTGCAAACGCGATCCCGGCGGCGCTAA
AAAACAACACCCACACCCACACTAATCTATCTCCCTCATACACAGGACAC
GACTGTGGCCACACGACGTTCAGCAACTATCCTTGGATCAACGCGATCTG
TGGTCACCTTTGCCACGCCCCCCTTTTCGTGCCCTTCTGGCCATGGGCGA
AGAGTCACAACGAGCACCACAAGTACCACAATCATGTCCACAAGGACATG
TCCTACCCGTGGTTCGGGCGCGAGCAGTTCGATACGGAAATGACGAGGAT
AGCCAAGTTCTGGCTGCGCACACCCTTCCATCCTTTTACGTCTTATCTTT
TCTCCTACCTGTTCGCGGGCTTTTACGATGGGTCTCACTTCAATCCTCTA
GGTGAGTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2879:14758..19466+

>mRNA_H-paniculata_contig2879.7846.1 ID=mRNA_H-paniculata_contig2879.7846.1|Name=mRNA_H-paniculata_contig2879.7846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig2879:14758..19466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCCGAGGAGTGACACAGCGATAGGCGCCAGGGATGACCTTCAGCA
GTCGTCCAGTCCCAGCCTCCAGAAGGAAGATTTCAAGCGCAAGCCCAACC
TCAGCGAGATCCGAGCGCAAATACCCCAAGAATGCCCCCGAGGAGTGACA
CAGCGATAGGCGCCAGGGATGACCTTCAGCAGTCGTCCAGTCCCAGCCTC
CAGAAGGAAGATTTCAAGCGCAAGCCCAACCTCAGCGAGATCCGAGCGCA
AATACCCCAAGAATGCTTTCAGAAGAGCCTCACACGCTCCCTGTTTTATA
TGGTGCGTGACATGGGCTGCGTAATGGCCTTACAGCACGTGTACCCCCAG
TACGTGGCCGGAAACTGGCCCCTGACCATTGCTTGGTGGAATGCAAACGG
CTTCATGCTGTGGTGTCTGTTCGTCGTCGATGCTTTCAGAAGAGCCTCAC
ACGCTCCCTGTTTTATATGGTGCGTGACATGGGCTGCGTAATGGCCTTAC
AGCACGTGTACCCCCAGTACGTGGCCGGAAACTGGCCCCTGACCATTGCT
TGGTGGAATGCAAACGGCTTCATGCTGTGGTGTCTGTTCGTCGTCGGACA
CGACTGTGGCCACACGACGTTCAGCAACTATCCTTGGATCAACGCGATCT
GTGGTCACCTTTGCCACGCCCCCCTTTTCGTGCCCTTCTGGCCATGGGCG
AAGAGTCACAACGAGCACCACAAGTACCACAATCATGTCCACAAGGACAT
GTCCTACCCGTGGTTCGGGCGCGAGCAGTTCGATACGGAAATGACGAGGA
TAGCCAAGTTCTGGCTGCGCACACCCTTCCATCCTTTTACGTCTTATCTT
TTCTCCTACCTGTTCGCGGGCTTTTACGATGGGTCTCACTTCAATCCTCT
AGGTGAGTTGGACACGACTGTGGCCACACGACGTTCAGCAACTATCCTTG
GATCAACGCGATCTGTGGTCACCTTTGCCACGCCCCCCTTTTCGTGCCCT
TCTGGCCATGGGCGAAGAGTCACAACGAGCACCACAAGTACCACAATCAT
GTCCACAAGGACATGTCCTACCCGTGGTTCGGGCGCGAGCAGTTCGATAC
GGAAATGACGAGGATAGCCAAGTTCTGGCTGCGCACACCCTTCCATCCTT
TTACGTCTTATCTTTTCTCCTACCTGTTCGCGGGCTTTTACGATGGGTCT
CACTTCAATCCTCTAGGTGAGTTG
back to top