mRNA_H-paniculata_contig28784.7844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28784.7844.1
Unique NamemRNA_H-paniculata_contig28784.7844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28784.7844.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.840e-11
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 1 
Query: 1306 ALQMAVCIFIVVAGLGLFDAKNLVPFAPTGMSGIVRGSAAAFFGYTGFEEV 1458
            A++MAVCIFI+V GL LFD  N++PFAP G++G++RGS+AAFFGY G++EV
Sbjct:  211 AIKMAVCIFIIVGGLALFDPGNMLPFAPMGVAGVIRGSSAAFFGYLGYDEV 261
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BLAST of mRNA_H-paniculata_contig28784.7844.1 vs. uniprot
Match: A0A7S3DQK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQK6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.290e-5
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1 
Query: 1297 FPRALQMAVCIFIVVAGLGLFDAKNLV--PFAPTGMSGIVRGSAAAFFGYTGFEEV 1458
            F  +L+M +  F++V G GL+ + N +  PFAP G+SG++RG+ ++FFGY G++EV
Sbjct:   80 FFTSLKMILVAFMIVGGFGLYQSSNFITKPFAPFGVSGVLRGATSSFFGYLGYDEV 135
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BLAST of mRNA_H-paniculata_contig28784.7844.1 vs. uniprot
Match: A0A8F0FDK3_9PHAE (Ribosomal protein S3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDK3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.230e-5
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = -2 
Query:  113 MARKAHPNSLRNNHENFQGCAYWNETQINYI 205
            MA+KAHPNSLR N + FQGCAYWNETQ NYI
Sbjct:    1 MAQKAHPNSLRINPKTFQGCAYWNETQFNYI 31
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28784.7844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQA2_ECTSI1.840e-1164.71Cationic amino acid transporter-like protein n=2 T... [more]
A0A7S3DQK6_9STRA2.290e-544.64Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A8F0FDK3_9PHAE3.230e-580.65Ribosomal protein S3 n=1 Tax=Protohalopteris sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28784contigH-paniculata_contig28784:302..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D8LQA2
KEGG koko:K03294
KEGG TC2.A.3.2
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
Ec32 ortholog descriptioncationic amino acid transporter-like protein
Ec32 orthologEc-26_005560.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size213
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28784.7844.1prot_H-paniculata_contig28784.7844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28784 1616..1783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.7649925-UTR-H-paniculata_contig28784:301..3381622929875.7649925-UTR-H-paniculata_contig28784:301..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28784 302..338 +
1691481050.3058913-UTR-H-paniculata_contig28784:301..3381691481050.3058913-UTR-H-paniculata_contig28784:301..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28784 302..338 +
1622929875.8054206-UTR-H-paniculata_contig28784:1783..17911622929875.8054206-UTR-H-paniculata_contig28784:1783..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28784 1784..1791 +
1691481050.3302438-UTR-H-paniculata_contig28784:1783..17911691481050.3302438-UTR-H-paniculata_contig28784:1783..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28784 1784..1791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.7852871-CDS-H-paniculata_contig28784:1615..17831622929875.7852871-CDS-H-paniculata_contig28784:1615..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28784 1616..1783 +
1691481050.3209794-CDS-H-paniculata_contig28784:1615..17831691481050.3209794-CDS-H-paniculata_contig28784:1615..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28784 1616..1783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28784.7844.1

>prot_H-paniculata_contig28784.7844.1 ID=prot_H-paniculata_contig28784.7844.1|Name=mRNA_H-paniculata_contig28784.7844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MAVCIFIVVAGLGLFDAKNLVPFAPTGMSGIVRGSAAAFFGYTGFEEVRE
GIERL*
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mRNA from alignment at H-paniculata_contig28784:302..1791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28784.7844.1 ID=mRNA_H-paniculata_contig28784.7844.1|Name=mRNA_H-paniculata_contig28784.7844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-paniculata_contig28784:302..1791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAAGCAGATAACCACCGTTCTTACAGGTCTCAAGGTGATGTCAAAGA
TGAAAGGATGATTGAAGCTTTGAGGTCTGTTTCGGGGCGGGGGGAAGGGT
GAACTATGACATTATATAATTAATTTGTGTTTCATTCCAATAAGCACAAC
CTTGAAAATTTTCATGGTTATTGCGCAAACTATTTGGGTGAGCTTTTCGT
GCCATTTTTTTTTTTTTTTTTATCCCTCCCTCCCTTTTTTTTTTACATAA
TTTTTTTTTTATGTAGTAACAAATTCACCTAATTTATGGTCTACCATTTG
TGGTGTAATCTTTGTAGATCATAAATTAGGTGAACAAAAACCACAGGGAA
CAACACCATTAACCACTATTGGAGGCATGGATTAAGAAATATACTCAGTT
ATTTTGATGACGATGAATGTGAGTTGTGTGAATTATGCATAAATCGATTG
AAATTGTGGTGCAGGGGGGGGTTATCGTATGCTTTGGGAGTGGCCATGAA
GCGAGTACGTGTTGTGCGGCAGATGAAGGGAGGTTCTCTGGAAGGTGGTA
CTTTGGTTTGACGGCATGTGGGGTTTGACTGTGCTGCTGGATGTTGGGAT
ATTGGCAGATGCTGAGAGCAGATGAAAAAACAGGCACCAAAGAAATATGT
GTCTTTTATTTTGGTTTTGGTTTTGGTTTTGGGAGAGCAGAGGAGAGTGG
GGGGGGGGGGGCTATGTGACGTTTGGAAAAAAAAAAAAAGAGAAAAAAAA
AATGATGGAAATATCTATATGTTTTACCATAATAGCGTTTATACCTAATA
TCTGTCAAGGGAGGAGTTCGTTGTGCTATTGTCATCACTGGTGCTTGAGG
AGTTTCATGTGAAAATCGTGTGGTACCTAGAAACCTCGTCGCAGTGCTGA
ATTAATACTGCTCGATAAGTGGCGTTTTGGGTACTATTCCTGAACTCATA
AAACGAAACGGGTCCCAACTCAACGGAAACAACTGTATTATCCGAGATGG
GTGAATACAGAAAACACCCTATTAACGTACATACAGAAAAAAAAACAAAA
AAACGATAGGATATAGTGTGGTTGACCTGATAAACGCCGCGCAATGGCGT
CCAATTGCGTACAGTAGCAATATCAATATCAAAATTCAAAAGTAAAATGC
ATGGTGACCCGCTGCTAAGAGTTCAAGCTAGAGACAGTCCTTATGCTTAA
AATGAGCTGCACACACACTCACGTTGTTCTATAGTCTATAGTTACTACAA
TTTATGCACATTTTTGCTAACCTGAAAGTGCACTTGTTTTACTTGCTTTC
CTCGCGCGTTGCAGATGGCCGTGTGTATCTTTATCGTTGTCGCGGGGCTA
GGCCTGTTCGACGCGAAAAATCTTGTGCCATTCGCCCCTACAGGGATGTC
GGGCATCGTTAGGGGGTCGGCAGCCGCGTTCTTCGGCTACACGGGATTCG
AGGAGGTGAGAGAAGGGATTGAGCGGTTGTGAAGAGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28784:302..1791+

>mRNA_H-paniculata_contig28784.7844.1 ID=mRNA_H-paniculata_contig28784.7844.1|Name=mRNA_H-paniculata_contig28784.7844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig28784:302..1791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGTGTGTATCTTTATCGTTGTCGCGGGGCTAGGCCTGTTCGACGC
GAAAAATCTTGTGCCATTCGCCCCTACAGGGATGTCGGGCATCGTTAGGG
GGTCGGCAGCCGCGTTCTTCGGCTACACGGGATTCGAGGAGGTGAGAGAA
GGGATTGAGCGGTTGTGAATGGCCGTGTGTATCTTTATCGTTGTCGCGGG
GCTAGGCCTGTTCGACGCGAAAAATCTTGTGCCATTCGCCCCTACAGGGA
TGTCGGGCATCGTTAGGGGGTCGGCAGCCGCGTTCTTCGGCTACACGGGA
TTCGAGGAGGTGAGAGAAGGGATTGAGCGGTTGTGA
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