mRNA_H-paniculata_contig2877.7841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2877.7841.1
Unique NamemRNA_H-paniculata_contig2877.7841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2877.7841.1 vs. uniprot
Match: D8LNJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.680e-6
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   94 DNAAEFEVTGEGTAGGPFGLKKVLFVRKREDSSKTLGS 207
            D+A E EVTGEGTAGGPFGLKKVLFVRK+  S K +GS
Sbjct:   29 DSAEELEVTGEGTAGGPFGLKKVLFVRKK--SEKGVGS 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2877.7841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ5_ECTSI9.680e-676.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2877contigH-paniculata_contig2877:4009..6134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size585
Cds size246
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2877.7841.1prot_H-paniculata_contig2877.7841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2877 4348..6134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.5153282-UTR-H-paniculata_contig2877:4008..43471622929875.5153282-UTR-H-paniculata_contig2877:4008..4347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2877 4009..4347 -
1691481050.2067122-UTR-H-paniculata_contig2877:4008..43471691481050.2067122-UTR-H-paniculata_contig2877:4008..4347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2877 4009..4347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.5410264-CDS-H-paniculata_contig2877:4347..45291622929875.5410264-CDS-H-paniculata_contig2877:4347..4529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2877 4348..4529 -
1691481050.2182715-CDS-H-paniculata_contig2877:4347..45291691481050.2182715-CDS-H-paniculata_contig2877:4347..4529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2877 4348..4529 -
1622929875.5648754-CDS-H-paniculata_contig2877:6070..61341622929875.5648754-CDS-H-paniculata_contig2877:6070..6134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2877 6071..6134 -
1691481050.226401-CDS-H-paniculata_contig2877:6070..61341691481050.226401-CDS-H-paniculata_contig2877:6070..6134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2877 6071..6134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2877.7841.1

>prot_H-paniculata_contig2877.7841.1 ID=prot_H-paniculata_contig2877.7841.1|Name=mRNA_H-paniculata_contig2877.7841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
SDVEVDYPQESFVSKHDGPAAEDAGAEPSADDNAAEFEVTGEGTAGGPFG
LKKVLFVRKREDSSKTLGSTGGDQKVRAVRQ*
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mRNA from alignment at H-paniculata_contig2877:4009..6134-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2877.7841.1 ID=mRNA_H-paniculata_contig2877.7841.1|Name=mRNA_H-paniculata_contig2877.7841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2126bp|location=Sequence derived from alignment at H-paniculata_contig2877:4009..6134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGATGTGGAAGTGGACTACCCGCAGGAGTCTTTTGTATCTAAACATGA
TGGCCCAGCGGCAGGTAAGATGGTCCACAAGTTTACGCGCTTGTAAAGGG
CAGACAGAACTTTTGTGGAGAGTAGAGGTGGCAAGTTTCAACAGATGAAT
TTGTTCTGACAAAGACTACTCCTTCGACTGGGATGTACCGTAAGTTGTGT
CTGTGGCTCAACTTGCCGGCACACCGTAGTACCCCTTGTTGTCTGTGCTT
TTTTGCTCTCGCTTTGTCGAAAAACGTTAACGTGCCTGCGTTTCGCGCAA
GCCCTGTTTGACGCGTCAAAACCTTGCTGTGCTTGAACAAAGAAAAGCTG
CACATGGCTGTGCACATCTTCTTACTATTTGAGTAGTCGGTTGAAAGTAT
ATTTTGGGAGTTCCAATTCTTTGCCTCAGTTCTGACACGTAATATAGAGC
CCCATGCCCCATAATGTAGTTTCCTTATTTTGCTGATGAGAAGCCATGTT
TTGGTCTTTGCCGTGTTCATCGATTTATCTTAGGCTAAACGTCAAACATA
AAATGGAGTTGGTGGCATGGCCCTAAACAGATACTCTGGTCAGTGTGGGT
CCATCGAGACCTATGATGTTAGTTGTGCATTTTTTATTTGGAGATACTGT
GGCGGTTATTCATGCGAGTGATGCGTGATTGGGGGACACACGATGTACGA
ATACCCCGCGTTCTTTTTCCAAGCCGACGCGTAGTCCTGATAGTCGAGAA
GTCTCATCACTGTAAATTATTCCTTGCATCATTCTCTTCATTGGTCCTCT
TTCATCGGTAAGTGTACGAAACATGGATATGACGTCTGTATACTCACAAC
AGAGGTAAGATGACCGGTGTCGCGCGAATTTAAAGGAGCTATTAGACAAT
CGTGGTAAGTTATCCCGACCACGTAGTCCCTCGCATTATTGTTGTCGGGC
ACGCATGAAACGGATTTCTCGTGTGGATGGATAGATCCCTCAGACCCGCG
GTCAACCGCTAATATTGTCCTAAAATCTCTTCCCTGCACTCGAAACTTTC
TTTCGAAGACGTTCCCGGGAACGTTGGTACGAGGCAATATAAAACGCCTG
CGGGAGGAAGGCTGTGGTAGTATATGGTCGACAACCACTACGTTGACGCG
CAACCAGGACTACTCCGTCCACCTTGTTGTGTCTGACCAAAACCCTTCGG
CATTCTACTGCGAGCCCCGGCCCGAAGGTTCGAATATACGGACTAACGCG
GGCCAAAAAAGAATAACACGTGTGATGGAACCTTGGTATTAACAGTTGCA
GTGAAGAAATGTGGGACAGGGGGCTTCTACACATTTAATAGGATGGATTC
CCTCCCCACCCCCCCACATTTCGTATGCTTGAGCGTATCCGTGGGTATAG
ACGTTCAAAGTCAGGGATCTCCTGTCCCATCGCTTGAATTATACATGCTT
GATTCGGGTAGGACTATCGATTAGTTGCATCCGCGCCTAAAATCACATGT
ACGATATGACGAGTACAGTACTAATGGGTACGGTAAGTTCCCTGTCTTAC
GTGCATTGTGGTCCTTCTATCGTGTGAAAATGATGCCCCGATGGAATGAT
GGCAGAGGATGCAGGCGCGGAGCCGAGCGCGGATGATAATGCGGCGGAAT
TTGAGGTGACCGGTGAGGGCACCGCCGGCGGTCCATTTGGACTCAAGAAG
GTACTTTTCGTACGCAAGAGGGAAGACAGCTCGAAGACGCTGGGTTCTAC
GGGCGGTGACCAAAAGGTTCGCGCTGTAAGGCAGTAGATGGATTTAGCAG
TTTAGCTTCTGTCGCTGTATACAACCGTGGTCACTTCCTTTTATTGTTTG
TACCCTCACAACAGTAAGGATTACTCTTGACTCGGTTTCACCAGGACAGG
ATGATTAGGTCGAGTGGCGTTTGCTCTGTCATGTATTGGAGGAGTGTCAA
CAACTGTACAGTTTTTTGCCTTGATAACTTTGGAGAAATGGCGAAGTTTA
TTGATTTTCACGTATATTTTCATCCATCGTTCTGAGTCGGACCCTCGAAA
TATTTGGGGTGAGAACGATAATGAAACTACTCCATTTTTTCTGATTCTGA
TGCTGAACCTCTTGATCCCTGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2877:4009..6134-

>mRNA_H-paniculata_contig2877.7841.1 ID=mRNA_H-paniculata_contig2877.7841.1|Name=mRNA_H-paniculata_contig2877.7841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig2877:4009..6134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGATGTGGAAGTGGACTACCCGCAGGAGTCTTTTGTATCTAAACATGA
TGGCCCAGCGGCAGTCTGATGTGGAAGTGGACTACCCGCAGGAGTCTTTT
GTATCTAAACATGATGGCCCAGCGGCAGAGGATGCAGGCGCGGAGCCGAG
CGCGGATGATAATGCGGCGGAATTTGAGGTGACCGGTGAGGGCACCGCCG
GCGGTCCATTTGGACTCAAGAAGGTACTTTTCGTACGCAAGAGGGAAGAC
AGCTCGAAGACGCTGGGTTCTACGGGCGGTGACCAAAAGGTTCGCGCTGT
AAGGCAGTAGAGGATGCAGGCGCGGAGCCGAGCGCGGATGATAATGCGGC
GGAATTTGAGGTGACCGGTGAGGGCACCGCCGGCGGTCCATTTGGACTCA
AGAAGGTACTTTTCGTACGCAAGAGGGAAGACAGCTCGAAGACGCTGGGT
TCTACGGGCGGTGACCAAAAGGTTCGCGCTGTAAGGCAGTAG
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