mRNA_H-paniculata_contig28760.7840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28760.7840.1
Unique NamemRNA_H-paniculata_contig28760.7840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A812W0T6_SYMMI (ModA protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W0T6_SYMMI)

HSP 1 Score: 124 bits (312), Expect = 7.050e-34
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            KDFDGWCWPGQSSYLDFTDA VR WWA RFA D+YEGST+DL+TWNDMNEPSVFNGPEV
Sbjct:  128 KDFDGWCWPGQSSYLDFTDARVREWWAGRFALDKYEGSTLDLFTWNDMNEPSVFNGPEV 186
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.230e-32
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
             DFDGWCWPGQSSYLDFTD GVR WWASRFA ++YEGST+DLYTWNDMNEPSVFNGPEV
Sbjct:  106 NDFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEV 164
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.690e-32
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
             DFDGWCWPGQSSYLDFTD GVR WWASRFA ++YEGST+DLYTWNDMNEPSVFNGPEV
Sbjct:  557 NDFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEV 615
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A4D9D2P9_9STRA (Gal_mutarotas_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.830e-29
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            DFDG+CWPGQSSYLDFTDAGVR WWA RFA D+Y GST +LYTWNDMNEPSVFNGPEV
Sbjct:  551 DFDGFCWPGQSSYLDFTDAGVRRWWAERFALDKYTGSTSNLYTWNDMNEPSVFNGPEV 608
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A7S1C9T9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9T9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.330e-29
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            +FDGWCWPG SSYLDFTDA VR+WW+ RF  + YEGST+ L+TWNDMNEPSVFNGPEV
Sbjct:  165 EFDGWCWPGSSSYLDFTDARVRSWWSDRFLLENYEGSTLSLFTWNDMNEPSVFNGPEV 222
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A7S4DBU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU0_HETAK)

HSP 1 Score: 114 bits (284), Expect = 7.920e-28
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            +DFDGWCWPG SSYLDFT   VR+WWA +FA D Y+GST+DL+TWNDMNEPSVFNGPEV
Sbjct:  190 EDFDGWCWPGASSYLDFTSEEVRSWWADQFALDTYQGSTLDLFTWNDMNEPSVFNGPEV 248
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A1E7FR44_9STRA (Glucosidase II alpha subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR44_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.520e-28
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            KDFDGWCWPG SSYLDFTD   R+WWA +FA D+Y GST  LYTWNDMNEPSVFNGPE+
Sbjct:  318 KDFDGWCWPGSSSYLDFTDEKARSWWADQFAYDRYHGSTPTLYTWNDMNEPSVFNGPEI 376
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.590e-28
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            DFDGWCWPG SSYLDFT   VR WWA + A D+YEGST+DLYTWNDMNEPSVFNGPEV
Sbjct:  522 DFDGWCWPGSSSYLDFTQPHVREWWAQQLALDKYEGSTMDLYTWNDMNEPSVFNGPEV 579
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: A0A7S2PTL2_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PTL2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.590e-28
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEV 177
            KD+DGWCWPG SSYLDFTDA VR WWA +FA ++Y GST +LYTWNDMNEPSVFNGPEV
Sbjct:  523 KDYDGWCWPGSSSYLDFTDASVRQWWAEQFAFNKYIGSTKNLYTWNDMNEPSVFNGPEV 581
[Close]
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Match: B7FVT3_PHATC (Alpha subunit of glucosidase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVT3_PHATC)

HSP 1 Score: 113 bits (283), Expect = 1.140e-27
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNEPSVFNGPEVCSFPSLR 198
            KD+DGWCWPG SSYLDFTD  VR+WWA +F+  +YEGST  L+TWNDMNEPSVFNGPEV     LR
Sbjct:  272 KDYDGWCWPGSSSYLDFTDENVRSWWADQFSYSRYEGSTPTLFTWNDMNEPSVFNGPEVSMQKDLR 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28760.7840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812W0T6_SYMMI7.050e-3488.14ModA protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
D7G789_ECTSI2.230e-3288.14Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A6H5KLR8_9PHAE4.690e-3288.14Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A4D9D2P9_9STRA3.830e-2986.21Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A7S1C9T9_9STRA5.330e-2977.59Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4DBU0_HETAK7.920e-2877.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7FR44_9STRA8.520e-2877.97Glucosidase II alpha subunit n=1 Tax=Fragilariopsi... [more]
A0A7S2STM5_9STRA8.590e-2881.03Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2PTL2_9STRA8.590e-2879.66Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
B7FVT3_PHATC1.140e-2771.21Alpha subunit of glucosidase n=3 Tax=Phaeodactylum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28760contigH-paniculata_contig28760:291..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.7e-27
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.4398322-CDS-H-paniculata_contig28760:290..5061622929875.4398322-CDS-H-paniculata_contig28760:290..506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28760 291..506 +
1691481050.1850097-CDS-H-paniculata_contig28760:290..5061691481050.1850097-CDS-H-paniculata_contig28760:290..506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28760 291..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28760.7840.1prot_H-paniculata_contig28760.7840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28760 291..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28760.7840.1

>prot_H-paniculata_contig28760.7840.1 ID=prot_H-paniculata_contig28760.7840.1|Name=mRNA_H-paniculata_contig28760.7840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
KDFDGWCWPGQSSYLDFTDAGVRAWWASRFAPDQYEGSTVDLYTWNDMNE
PSVFNGPEVCSFPSLRPWAKHD
back to top

mRNA from alignment at H-paniculata_contig28760:291..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28760.7840.1 ID=mRNA_H-paniculata_contig28760.7840.1|Name=mRNA_H-paniculata_contig28760.7840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig28760:291..506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGATTTCGACGGCTGGTGTTGGCCCGGGCAGTCTAGCTACTTGGACTT
CACGGATGCCGGGGTGCGCGCGTGGTGGGCCTCTCGCTTCGCACCTGACC
AATATGAGGGGAGCACCGTAGACCTGTACACATGGAACGATATGAACGAA
CCGAGCGTCTTCAACGGGCCGGAGGTATGTAGCTTTCCTTCGTTACGGCC
ATGGGCTAAACACGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28760:291..506+

>mRNA_H-paniculata_contig28760.7840.1 ID=mRNA_H-paniculata_contig28760.7840.1|Name=mRNA_H-paniculata_contig28760.7840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig28760:291..506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGATTTCGACGGCTGGTGTTGGCCCGGGCAGTCTAGCTACTTGGACTT
CACGGATGCCGGGGTGCGCGCGTGGTGGGCCTCTCGCTTCGCACCTGACC
AATATGAGGGGAGCACCGTAGACCTGTACACATGGAACGATATGAACGAA
CCGAGCGTCTTCAACGGGCCGGAGGTATGTAGCTTTCCTTCGTTACGGCC
ATGGGCTAAACACGACAAGGATTTCGACGGCTGGTGTTGGCCCGGGCAGT
CTAGCTACTTGGACTTCACGGATGCCGGGGTGCGCGCGTGGTGGGCCTCT
CGCTTCGCACCTGACCAATATGAGGGGAGCACCGTAGACCTGTACACATG
GAACGATATGAACGAACCGAGCGTCTTCAACGGGCCGGAGGTATGTAGCT
TTCCTTCGTTACGGCCATGGGCTAAACACGAC
back to top