prot_H-paniculata_contig2875.7837.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2875.7837.1
Unique Nameprot_H-paniculata_contig2875.7837.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length310
Homology
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BLAST of mRNA_H-paniculata_contig2875.7837.1 vs. uniprot
Match: A0A6N7AQR0_9BACT (Chaperone protein DnaJ n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A6N7AQR0_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 3.460e-6
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:  260 RQGLDLGGSVNITLEEAFTGKGIPVKLHRQVPCPACHGLGATKLATCDRC 309
            R+G D+  S+ ++LEEAFTG   P+ L R++PC AC+G GA    TCDRC
Sbjct:  117 RKGADMLMSIELSLEEAFTGVTRPITLTREIPCRACNGTGAEAYQTCDRC 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2875.7837.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6N7AQR0_9BACT3.460e-652.00Chaperone protein DnaJ n=1 Tax=Nitrospirae bacteri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.260.20coord: 264..291
e-value: 4.8E-7
score: 31.3
NoneNo IPR availableGENE3D2.10.230.10coord: 292..310
e-value: 4.8E-7
score: 31.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..310
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyGENE3D2.60.40.780coord: 60..138
e-value: 2.0E-6
score: 29.8
IPR036208VHL superfamilySUPERFAMILY49468VHLcoord: 77..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2875contigH-paniculata_contig2875:13933..18588 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2875.7837.1mRNA_H-paniculata_contig2875.7837.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2875 13128..18588 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2875.7837.1 ID=prot_H-paniculata_contig2875.7837.1|Name=mRNA_H-paniculata_contig2875.7837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp
MKYASSFPSLLLVGAASSVDPRWGRNWAPALLAHAEPDDTSKDSAPAEET
GRYCPTKTPSMSARASSPFPSHGPTCERTTVEIRNEVDSEVSVFWVDPAG
QEVQHVSLQAGGADRKLVCRGHYWRARSSSASSSNPGRLLSELLVPADAR
RQCTGEPEEVSTKTTEVAELPKTSAEHNVRSPSRTTTDDNAGSCSIIDGA
CTSACKRGNTAKVWTVRACTEFPLPDSFSLRSSLGNIGIFEVSRGNLGIR
MTEKQGVAFRQGLDLGGSVNITLEEAFTGKGIPVKLHRQVPCPACHGLGA
TKLATCDRCD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037140VHL_beta_dom_sf
IPR036208VHL_sf