mRNA_H-paniculata_contig28727.7832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28727.7832.1
Unique NamemRNA_H-paniculata_contig28727.7832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Match: A0A6H5KM56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM56_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.300e-7
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    4 LDYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEASLGCPDH 168
            L+YS+   EL   ++GD++    W  +  V + V  M++ FPGLRWE SL CP H
Sbjct:  437 LEYSSTDNELSARIFGDISTPAPWTALSYVMSAVILMLVDFPGLRWEGSLKCPQH 491
[Close]
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.210e-7
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    7 DYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEASLGCPDH 168
            +YS+   EL   ++GD++ +  W  +  V + V  M++ FPGLRW  SL CP H
Sbjct:  637 EYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQH 690
[Close]
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.400e-7
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    4 LDYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEASLGCPDHPKNV 180
            ++YS DK E+ + V+G ++ A  WA +    +V + M  +FPGLRW A+L CP H +++
Sbjct:  801 VEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDM 859
[Close]
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    4 LDYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEASLGCPDHPKNV 180
            ++YS D  E+ + V+G +  A  WA +    +V + M  +FPGLRW ASL CP H +++
Sbjct:  765 IEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDM 823
[Close]
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.380e-6
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    4 LDYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEASLGCPDHPKNV 180
            ++YS    E+ + V+G++     WA +    + VR M   FPGLRW ASL CP+H +++
Sbjct:  903 VEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHKQDM 961
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28727.7832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KM56_9PHAE2.300e-741.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI3.210e-738.89LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FL98_ECTSI4.400e-738.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL89_ECTSI1.540e-638.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JME6_9PHAE7.380e-637.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28727contigH-paniculata_contig28727:2912..3104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.0007098-CDS-H-paniculata_contig28727:2911..31031622929874.0007098-CDS-H-paniculata_contig28727:2911..3103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28727 2912..3103 +
1691481049.537654-CDS-H-paniculata_contig28727:2911..31031691481049.537654-CDS-H-paniculata_contig28727:2911..3103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28727 2912..3103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28727.7832.1prot_H-paniculata_contig28727.7832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28727 2912..3103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28727.7832.1

>prot_H-paniculata_contig28727.7832.1 ID=prot_H-paniculata_contig28727.7832.1|Name=mRNA_H-paniculata_contig28727.7832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
RLDYSTDKKELVVAVWGDLTQAVAWAIICCVCAVVRKMILQFPGLRWEAS
LGCPDHPKNVMGIS
back to top

mRNA from alignment at H-paniculata_contig28727:2912..3104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28727.7832.1 ID=mRNA_H-paniculata_contig28727.7832.1|Name=mRNA_H-paniculata_contig28727.7832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=193bp|location=Sequence derived from alignment at H-paniculata_contig28727:2912..3104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTTGATTACAGCACGGATAAGAAGGAGCTGGTGGTGGCGGTTTGGGG
AGATCTCACCCAGGCTGTTGCGTGGGCCATCATCTGCTGTGTGTGTGCAG
TCGTCCGGAAGATGATCCTGCAATTTCCAGGACTGCGCTGGGAGGCGTCC
TTGGGCTGCCCAGATCACCCTAAAAACGTCATGGGCATCTCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28727:2912..3104+

>mRNA_H-paniculata_contig28727.7832.1 ID=mRNA_H-paniculata_contig28727.7832.1|Name=mRNA_H-paniculata_contig28727.7832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig28727:2912..3104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTTGATTACAGCACGGATAAGAAGGAGCTGGTGGTGGCGGTTTGGGG
AGATCTCACCCAGGCTGTTGCGTGGGCCATCATCTGCTGTGTGTGTGCAG
TCGTCCGGAAGATGATCCTGCAATTTCCAGGACTGCGCTGGGAGGCGTCC
TTGGGCTGCCCAGATCACCCTAAAAACGTCATGGGCATCTCTAGGCTTGA
TTACAGCACGGATAAGAAGGAGCTGGTGGTGGCGGTTTGGGGAGATCTCA
CCCAGGCTGTTGCGTGGGCCATCATCTGCTGTGTGTGTGCAGTCGTCCGG
AAGATGATCCTGCAATTTCCAGGACTGCGCTGGGAGGCGTCCTTGGGCTG
CCCAGATCACCCTAAAAACGTCATGGGCATCTCT
back to top