prot_H-paniculata_contig28727.7831.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28727.7831.1
Unique Nameprot_H-paniculata_contig28727.7831.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length123
Homology
BLAST of mRNA_H-paniculata_contig28727.7831.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.110e-6
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 0
Query:    1 MVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTI---GMTREDLLDKWRHEIE---EKGWTVPNPESALEGALTI 80
            MVLP+SWD A++FL  L  G        L        AT + KT    G+T E+L  KW+  ++    +G TV N E+ALEGAL+I
Sbjct:  576 MVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSI 661          
BLAST of mRNA_H-paniculata_contig28727.7831.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-5
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 0
Query:    1 MVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSQATPSVKTI---GMTREDLLDKWR---HEIEEKGWTVPNPESALEGALTISIVNREMAR 89
            MVLP+SWD A++ L  L  G       +  +L  DR  +  T   KT    G+T E+L  KW+    E+E +G TV N ++ALEGAL+I   +  + R
Sbjct:   87 MVLPRSWDIALTVLEALEHGRDPVEVVLHKSLDPDRGNATKTAEGKTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVR 184          
BLAST of mRNA_H-paniculata_contig28727.7831.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.310e-5
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0
Query:    1 MVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTIG--------MTREDLLDKWRHEIEE---KGWTVPNPESALEGALTI 80
            MVLP+SWD A++FL  L  G     P  +   + P   + + +T G        +T E+L  +W+  ++E   +G TV N E+ALEGAL+I
Sbjct:  405 MVLPRSWDVALTFLDSLEYGRH---PVEMVMLKSPDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSI 492          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28727.7831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJS7_ECTSI2.110e-640.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L0H4_9PHAE2.420e-537.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE3.310e-536.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28727contigH-paniculata_contig28727:85..2309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28727.7831.1mRNA_H-paniculata_contig28727.7831.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28727 55..2839 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28727.7831.1 ID=prot_H-paniculata_contig28727.7831.1|Name=mRNA_H-paniculata_contig28727.7831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTIGMTRE
DLLDKWRHEIEEKGWTVPNPESALEGALTISIVNREMARSRWNLRWHPVA
DTVACPFFTACMRVGVDGIGYY*
back to top