prot_H-paniculata_contig28726.7830.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28726.7830.1
Unique Nameprot_H-paniculata_contig28726.7830.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length60
Homology
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BLAST of mRNA_H-paniculata_contig28726.7830.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.040e-10
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:    1 MVVMILIQHFLVRWRGQGHRRESKAVGYSGVLFAWMTFAAVIQKTFCPIAAFLPEMCFDS 60
            MVVM+ I+H LV+WRG   +RE KAVG+S VLFA+MT+ AV  + FCPI      +CF +
Sbjct:  287 MVVMV-IKHALVKWRGVESQREGKAVGFSCVLFAYMTYLAVAMREFCPIGT----LCFST 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28726.7830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N4_ECTSI7.040e-1053.33Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..60
NoneNo IPR availableTMHMMTMhelixcoord: 31..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28726contigH-paniculata_contig28726:354..533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28726.7830.1mRNA_H-paniculata_contig28726.7830.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28726 330..533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28726.7830.1 ID=prot_H-paniculata_contig28726.7830.1|Name=mRNA_H-paniculata_contig28726.7830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MVVMILIQHFLVRWRGQGHRRESKAVGYSGVLFAWMTFAAVIQKTFCPIA
AFLPEMCFDS
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