mRNA_H-paniculata_contig28726.7830.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28726.7830.1
Unique NamemRNA_H-paniculata_contig28726.7830.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28726.7830.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.160e-14
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 SLDAVVTTMVVMILIQHFLVRWRGQGHRRESKAVGYSGVLFAWMTFAAVIQKTFCPIAAFLPEMCFDS 204
            SLD VVTT++V+++I+H LV+WRG   +RE KAVG+S VLFA+MT+ AV  + FCPI      +CF +
Sbjct:  278 SLDLVVTTIMVVMVIKHALVKWRGVESQREGKAVGFSCVLFAYMTYLAVAMREFCPIGT----LCFST 341
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BLAST of mRNA_H-paniculata_contig28726.7830.1 vs. uniprot
Match: A0A7S1XQ68_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ68_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.000e-5
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 SLDAVVTTMVVMILIQHFLVRWRG-----QGHRRESKAVGYSGVLFAWMTFAAVIQKTFCPIAAFLPEMCFDS 204
            ++D VV T+ V   +   L+R  G     +   R   ++G+S VLFAWMT  A+    FCPI  FLPE+CF +
Sbjct:  245 TVDLVVLTVAVEAAMLWALMRCAGADAEARSRWRNRSSLGFSAVLFAWMTVEALKMDEFCPIF-FLPELCFKT 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28726.7830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3N4_ECTSI6.160e-1452.94Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S1XQ68_9STRA3.000e-539.73Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28726contigH-paniculata_contig28726:330..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7G3N4
KEGG koko:K09651
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size204
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.8256474-UTR-H-paniculata_contig28726:329..3531622929873.8256474-UTR-H-paniculata_contig28726:329..353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28726 330..353 +
1691481049.450501-UTR-H-paniculata_contig28726:329..3531691481049.450501-UTR-H-paniculata_contig28726:329..353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28726 330..353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.8417094-CDS-H-paniculata_contig28726:353..5331622929873.8417094-CDS-H-paniculata_contig28726:353..533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28726 354..533 +
1691481049.4655087-CDS-H-paniculata_contig28726:353..5331691481049.4655087-CDS-H-paniculata_contig28726:353..533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28726 354..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28726.7830.1prot_H-paniculata_contig28726.7830.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28726 354..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28726.7830.1

>prot_H-paniculata_contig28726.7830.1 ID=prot_H-paniculata_contig28726.7830.1|Name=mRNA_H-paniculata_contig28726.7830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MVVMILIQHFLVRWRGQGHRRESKAVGYSGVLFAWMTFAAVIQKTFCPIA
AFLPEMCFDS
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mRNA from alignment at H-paniculata_contig28726:330..533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28726.7830.1 ID=mRNA_H-paniculata_contig28726.7830.1|Name=mRNA_H-paniculata_contig28726.7830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig28726:330..533+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATTAGATGCGGTGGTAACCACCATGGTGGTGATGATACTAATACAGCA
TTTTCTGGTGCGCTGGAGGGGACAGGGGCATCGCCGTGAGTCGAAGGCCG
TTGGATACTCGGGCGTGCTGTTTGCGTGGATGACGTTCGCTGCCGTGATC
CAGAAGACATTTTGTCCGATAGCAGCGTTTTTGCCTGAGATGTGCTTCGA
TTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig28726:330..533+

>mRNA_H-paniculata_contig28726.7830.1 ID=mRNA_H-paniculata_contig28726.7830.1|Name=mRNA_H-paniculata_contig28726.7830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig28726:330..533+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGATGATACTAATACAGCATTTTCTGGTGCGCTGGAGGGGACA
GGGGCATCGCCGTGAGTCGAAGGCCGTTGGATACTCGGGCGTGCTGTTTG
CGTGGATGACGTTCGCTGCCGTGATCCAGAAGACATTTTGTCCGATAGCA
GCGTTTTTGCCTGAGATGTGCTTCGATTCTATGGTGGTGATGATACTAAT
ACAGCATTTTCTGGTGCGCTGGAGGGGACAGGGGCATCGCCGTGAGTCGA
AGGCCGTTGGATACTCGGGCGTGCTGTTTGCGTGGATGACGTTCGCTGCC
GTGATCCAGAAGACATTTTGTCCGATAGCAGCGTTTTTGCCTGAGATGTG
CTTCGATTCT
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