mRNA_H-paniculata_contig28689.7819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28689.7819.1
Unique NamemRNA_H-paniculata_contig28689.7819.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.310e-13
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   13 QTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVIG 120
            QTLP+FVFCFTCHQNIFTIC+EIVRPT AR+D VI 
Sbjct:  322 QTLPIFVFCFTCHQNIFTICNEIVRPTPARVDTVIA 357
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: F0XYI5_AURAN (Uncharacterized protein AOT5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYI5_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVIGT 123
            L   +T+ +F+F +TCHQNIF + +EI RPT AR+DAV+ T
Sbjct:  215 LDTAKTMTIFIFGYTCHQNIFAVVNEIKRPTPARLDAVVAT 255
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A7S0A510_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A510_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVIGT 123
            L LG+ LP+F+F FTCHQNIFTIC+E+   +  R+D +I +
Sbjct:  227 LKLGKALPVFIFGFTCHQNIFTICNEVRDASRGRVDGMIAS 267
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A812PB23_9DINO (Avt5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PB23_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            L+LG+ LP+F+F FTC QNIF+IC+E+   T  RID +I
Sbjct:  337 LALGKALPVFIFAFTCQQNIFSICNEVKNSTRGRIDRII 375
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A1Q9EBS9_SYMMI (Ankyrin-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EBS9_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 SLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            +LG+ LP+F+F FTC QNIF+IC+E+   T  RID +I
Sbjct: 1141 ALGRALPVFIFAFTCQQNIFSICNEVKNSTRGRIDRII 1178
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A813AFT4_SYMMI (PPC6-6 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813AFT4_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 SLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            +LG+ LP+F+F FTC QNIF+IC+E+   T  RID +I
Sbjct:  455 ALGRALPVFIFAFTCQQNIFSICNEVKNSTRGRIDRII 492
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   19 LPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            L LFVFCFTCHQNIFTIC+EI R T   ++ VI
Sbjct:  313 LTLFVFCFTCHQNIFTICNEIKRNTRKNVNRVI 345
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A7S1WY18_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WY18_ALECA)

HSP 1 Score: 51.6 bits (122), Expect = 1.950e-6
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            L LG+ LP+F+F FTC QN+FTIC+E+   +  R+D +I
Sbjct:  297 LRLGKVLPVFIFGFTCQQNVFTICNEVKEASCRRVDGMI 335
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A6S8D239_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8D239_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.830e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVI 117
            L L +T+ +FVF FTCHQNIF++  EI RPT  RI  VI
Sbjct:  202 LRLAKTMTIFVFGFTCHQNIFSVVTEIKRPTSQRISFVI 240
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BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Match: A0A8J5XBN8_DIALT (Aa_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBN8_DIALT)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 19/36 (52.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 QTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVIG 120
            + L +FVF FTC QN+F++ +E+ +PT+ARID V+G
Sbjct:  211 RVLSIFVFGFTCQQNVFSVVNELRKPTLARIDLVVG 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28689.7819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G1F5_ECTSI2.310e-1383.33Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
F0XYI5_AURAN1.160e-753.66Uncharacterized protein AOT5 n=1 Tax=Aureococcus a... [more]
A0A7S0A510_9DINO1.540e-753.66Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A812PB23_9DINO2.170e-756.41Avt5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1Q9EBS9_SYMMI5.540e-755.26Ankyrin-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]
A0A813AFT4_SYMMI5.560e-755.26PPC6-6 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S1TS32_9STRA1.420e-669.70Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S1WY18_ALECA1.950e-651.28Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6S8D239_9STRA6.830e-658.97Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J5XBN8_DIALT1.280e-552.78Aa_trans domain-containing protein n=1 Tax=Diacron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28689contigH-paniculata_contig28689:250..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue8e-10
Seed eggNOG ortholog2880.D7G1F5
Preferred nameAVT7
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.6817834-CDS-H-paniculata_contig28689:249..3721622929872.6817834-CDS-H-paniculata_contig28689:249..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28689 250..372 -
1691481048.7654078-CDS-H-paniculata_contig28689:249..3721691481048.7654078-CDS-H-paniculata_contig28689:249..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28689 250..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28689.7819.1prot_H-paniculata_contig28689.7819.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28689 250..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28689.7819.1

>prot_H-paniculata_contig28689.7819.1 ID=prot_H-paniculata_contig28689.7819.1|Name=mRNA_H-paniculata_contig28689.7819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
LSLGQTLPLFVFCFTCHQNIFTICDEIVRPTVARIDAVIGT
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mRNA from alignment at H-paniculata_contig28689:250..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28689.7819.1 ID=mRNA_H-paniculata_contig28689.7819.1|Name=mRNA_H-paniculata_contig28689.7819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig28689:250..372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCCCTCGGCCAGACCCTCCCGTTGTTCGTATTTTGCTTCACTTGCCA
CCAGAACATCTTCACCATCTGTGACGAGATCGTGCGACCAACCGTGGCAC
GTATCGATGCAGTCATAGGTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig28689:250..372-

>mRNA_H-paniculata_contig28689.7819.1 ID=mRNA_H-paniculata_contig28689.7819.1|Name=mRNA_H-paniculata_contig28689.7819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig28689:250..372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCCCTCGGCCAGACCCTCCCGTTGTTCGTATTTTGCTTCACTTGCCA
CCAGAACATCTTCACCATCTGTGACGAGATCGTGCGACCAACCGTGGCAC
GTATCGATGCAGTCATAGGTACGTTATCCCTCGGCCAGACCCTCCCGTTG
TTCGTATTTTGCTTCACTTGCCACCAGAACATCTTCACCATCTGTGACGA
GATCGTGCGACCAACCGTGGCACGTATCGATGCAGTCATAGGTACG
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