mRNA_H-paniculata_contig28677.7817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28677.7817.1
Unique NamemRNA_H-paniculata_contig28677.7817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28677.7817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28677contigH-paniculata_contig28677:2050..2988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size939
Cds size939
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.5174239-CDS-H-paniculata_contig28677:2049..29881622929872.5174239-CDS-H-paniculata_contig28677:2049..2988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28677 2050..2988 +
1691481048.6937027-CDS-H-paniculata_contig28677:2049..29881691481048.6937027-CDS-H-paniculata_contig28677:2049..2988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28677 2050..2988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28677.7817.1prot_H-paniculata_contig28677.7817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28677 2050..2988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28677.7817.1

>prot_H-paniculata_contig28677.7817.1 ID=prot_H-paniculata_contig28677.7817.1|Name=mRNA_H-paniculata_contig28677.7817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MEARFGALTRTNLLIRPLMEERPEREAEDSRVTWKEINAKLFDILTLSVD
GPAEAIVCQYAGRGISPGDGRSAYNTMVEKYEERTHARGMDLHADLANMA
VETPDQDPDDFILTVEKVIDDLAMLNEPVTDSRKRSILLLGLTNDYPIAQ
TVIRSCGLISYETFRQLIRDPWCHEIAPQMGKAPYLVLATTSGKPRRPPS
DEYINRDVERERGEGQNMEAGVTRASEPSRGARRRRPVCAICGVCGHAAF
ECDVSGTEEDFGIQCSNCGKHGHRQWECREKRQAKPLGGKRHSIGEHAGY
VKEHNVTDDCRT*
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mRNA from alignment at H-paniculata_contig28677:2050..2988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28677.7817.1 ID=mRNA_H-paniculata_contig28677.7817.1|Name=mRNA_H-paniculata_contig28677.7817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=939bp|location=Sequence derived from alignment at H-paniculata_contig28677:2050..2988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGCGTTTCGGAGCGCTAACAAGAACAAATCTGCTGATTAGACC
GCTAATGGAAGAGCGGCCAGAACGAGAGGCAGAAGACAGCCGGGTCACAT
GGAAAGAAATAAACGCGAAGCTGTTCGATATACTGACGCTGTCTGTGGAT
GGACCGGCAGAAGCCATAGTCTGCCAATACGCGGGCCGAGGCATATCCCC
AGGAGACGGGCGAAGTGCTTATAACACAATGGTGGAGAAGTATGAAGAGA
GAACACACGCGCGGGGAATGGATCTACACGCCGACCTCGCTAACATGGCC
GTCGAGACACCAGACCAAGACCCGGACGACTTCATTCTTACGGTCGAAAA
AGTGATTGACGATCTGGCCATGCTTAATGAGCCGGTGACCGACTCCCGCA
AACGCAGCATCCTCCTCCTCGGATTGACCAACGATTACCCGATTGCACAA
ACCGTCATTAGATCGTGCGGGCTAATTTCATATGAAACGTTCCGACAACT
GATTCGAGATCCCTGGTGCCATGAAATTGCGCCGCAAATGGGCAAAGCGC
CCTACCTAGTACTGGCCACCACAAGCGGAAAACCGAGAAGACCCCCCTCC
GACGAGTACATAAACCGTGACGTCGAACGAGAGCGCGGTGAGGGCCAAAA
TATGGAAGCAGGCGTTACGCGGGCGAGTGAGCCATCAAGAGGAGCACGGC
GACGAAGACCGGTTTGCGCCATTTGCGGCGTGTGCGGTCATGCCGCTTTC
GAGTGTGACGTTTCAGGAACGGAGGAAGACTTTGGCATCCAATGCTCGAA
TTGCGGCAAGCATGGTCATAGGCAGTGGGAGTGTCGTGAGAAGCGCCAAG
CGAAACCACTCGGCGGAAAACGACACAGCATAGGCGAACACGCGGGCTAC
GTAAAAGAGCATAATGTAACAGACGATTGTCGTACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28677:2050..2988+

>mRNA_H-paniculata_contig28677.7817.1 ID=mRNA_H-paniculata_contig28677.7817.1|Name=mRNA_H-paniculata_contig28677.7817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig28677:2050..2988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGCGTTTCGGAGCGCTAACAAGAACAAATCTGCTGATTAGACC
GCTAATGGAAGAGCGGCCAGAACGAGAGGCAGAAGACAGCCGGGTCACAT
GGAAAGAAATAAACGCGAAGCTGTTCGATATACTGACGCTGTCTGTGGAT
GGACCGGCAGAAGCCATAGTCTGCCAATACGCGGGCCGAGGCATATCCCC
AGGAGACGGGCGAAGTGCTTATAACACAATGGTGGAGAAGTATGAAGAGA
GAACACACGCGCGGGGAATGGATCTACACGCCGACCTCGCTAACATGGCC
GTCGAGACACCAGACCAAGACCCGGACGACTTCATTCTTACGGTCGAAAA
AGTGATTGACGATCTGGCCATGCTTAATGAGCCGGTGACCGACTCCCGCA
AACGCAGCATCCTCCTCCTCGGATTGACCAACGATTACCCGATTGCACAA
ACCGTCATTAGATCGTGCGGGCTAATTTCATATGAAACGTTCCGACAACT
GATTCGAGATCCCTGGTGCCATGAAATTGCGCCGCAAATGGGCAAAGCGC
CCTACCTAGTACTGGCCACCACAAGCGGAAAACCGAGAAGACCCCCCTCC
GACGAGTACATAAACCGTGACGTCGAACGAGAGCGCGGTGAGGGCCAAAA
TATGGAAGCAGGCGTTACGCGGGCGAGTGAGCCATCAAGAGGAGCACGGC
GACGAAGACCGGTTTGCGCCATTTGCGGCGTGTGCGGTCATGCCGCTTTC
GAGTGTGACGTTTCAGGAACGGAGGAAGACTTTGGCATCCAATGCTCGAA
TTGCGGCAAGCATGGTCATAGGCAGTGGGAGTGTCGTGAGAAGCGCCAAG
CGAAACCACTCGGCGGAAAACGACACAGCATAGGCGAACACGCGGGCTAC
GTAAAAGAGCATAATGTAACAGACGATTGTCGTACTTGAATGGAAGCGCG
TTTCGGAGCGCTAACAAGAACAAATCTGCTGATTAGACCGCTAATGGAAG
AGCGGCCAGAACGAGAGGCAGAAGACAGCCGGGTCACATGGAAAGAAATA
AACGCGAAGCTGTTCGATATACTGACGCTGTCTGTGGATGGACCGGCAGA
AGCCATAGTCTGCCAATACGCGGGCCGAGGCATATCCCCAGGAGACGGGC
GAAGTGCTTATAACACAATGGTGGAGAAGTATGAAGAGAGAACACACGCG
CGGGGAATGGATCTACACGCCGACCTCGCTAACATGGCCGTCGAGACACC
AGACCAAGACCCGGACGACTTCATTCTTACGGTCGAAAAAGTGATTGACG
ATCTGGCCATGCTTAATGAGCCGGTGACCGACTCCCGCAAACGCAGCATC
CTCCTCCTCGGATTGACCAACGATTACCCGATTGCACAAACCGTCATTAG
ATCGTGCGGGCTAATTTCATATGAAACGTTCCGACAACTGATTCGAGATC
CCTGGTGCCATGAAATTGCGCCGCAAATGGGCAAAGCGCCCTACCTAGTA
CTGGCCACCACAAGCGGAAAACCGAGAAGACCCCCCTCCGACGAGTACAT
AAACCGTGACGTCGAACGAGAGCGCGGTGAGGGCCAAAATATGGAAGCAG
GCGTTACGCGGGCGAGTGAGCCATCAAGAGGAGCACGGCGACGAAGACCG
GTTTGCGCCATTTGCGGCGTGTGCGGTCATGCCGCTTTCGAGTGTGACGT
TTCAGGAACGGAGGAAGACTTTGGCATCCAATGCTCGAATTGCGGCAAGC
ATGGTCATAGGCAGTGGGAGTGTCGTGAGAAGCGCCAAGCGAAACCACTC
GGCGGAAAACGACACAGCATAGGCGAACACGCGGGCTACGTAAAAGAGCA
TAATGTAACAGACGATTGTCGTACTTGA
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