mRNA_H-paniculata_contig28669.7812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.050e-51 Identity = 108/270 (40.00%), Postives = 160/270 (59.26%), Query Frame = 1
Query: 82 GWVASSPGTRIARVWQDLDRYPVADFKQRYETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRRRM--PGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
GW +SPG A LD + D R+ET+ ++K L D A+L H NL+N E++ RR P + TPLSLLRA+KL +LPALL S DG+ +R++R+ ++KRGDIS LPWLM +A ++R R + D++++ ACRH GG+ +A RALL++ P N ++ + AKF ED+ + A A I S G +P+++++P+ LI ++ S+++ S AGNDG FSHL+ I NT G+E F + S WRR
Sbjct: 326 GWNQNSPGVGPA-----LDEVTMEDLTLRFETVKKIKPWLASDH-ARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRR 589
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.310e-47 Identity = 102/269 (37.92%), Postives = 155/269 (57.62%), Query Frame = 1
Query: 85 WVASSPGTRIARVWQDLDRYPVADFKQRYETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRR--RMPGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
W SPG A LD + D R++T+ +V+ D A+L H +L+N +++ TPLS +R +KL +LP +L S DG+ +R+KR+ S+KRGDIS VLPWL+ T+A +AR R A + D++++ A ACRH GG+ +A RALL+D P N ++ + AKF ED + A A I AS+ G +P+ +++P+ L+ ++ S+++ S AGNDG FSHL+ I+NT G+E F + S WRR
Sbjct: 157 WNQDSPGIGPA-----LDDVSMDDLSLRFQTVKKVQPRFASDH-ARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRR 419
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 179 bits (454), Expect = 2.920e-47 Identity = 97/253 (38.34%), Postives = 149/253 (58.89%), Query Frame = 1
Query: 133 LDRYPVADFKQRYETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRR--RMPGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
LD + D R++T+ +V+ D A L H +L+N +++ TPLS +R +KL +LP +L S DG+ +R+KR+ S+KRGDIS VLPWL+ CT+A +AR R A + D++++ A ACRH GG+ +A RALL+D P N ++ + AKF ED + A A AS+ G +P+ +++P+ L+ ++ S+++ S AGNDG FSHL+ I+NT G+E F + S WRR
Sbjct: 189 LDDVSMDDLSLRFQTVKKVQPRFASDH-ACLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIECTKAASARSRGSAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRR 440
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.470e-45 Identity = 92/241 (38.17%), Postives = 145/241 (60.17%), Query Frame = 1
Query: 169 YETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRRRMPGAET--PLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
++T+ +V+ D A+L H +L+N +++ + T PLS +R +K +LP +L S DG+ +R+KR+ S+KRGDIS VLPWL+ T+A +AR R A + D++++ A ACRH GG+ +A RALL+D P N ++ + AKF ED + A A I AS+ G +P+ +++P+ L+ ++ S+++ S AGNDG FSHL+ I+NT G+E F + S WRR
Sbjct: 250 FQTVKKVQPRFASDH-ARLQTHVLHLVNKQLAEGGGASSATGAPLSTIRVIKRWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRR 489
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 171 bits (434), Expect = 9.690e-45 Identity = 106/305 (34.75%), Postives = 164/305 (53.77%), Query Frame = 1
Query: 7 VQEDPSSRERVEVFGGVVPAITPQPG-------WVASSPGTRIARVWQDLDRYPVADFKQRYETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRR--RMPGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRRSME 894
VQ DP + R E ++ + +P W SPG A LD + D R++T+ +V+ D A+L H +L+N +++ TPLS +R +KL +LP +L DG+ +R+ R+ S+KR DIS VLPWL+ T+A +AR R A D++++ A ACRH GG+ +A RALL+D P N ++ + AKF ED + A A I AS+ G +P+ +++P+ L+ +V +++ S AGNDG FSHL+ I+NT G+E F + S WRR ++
Sbjct: 126 VQADPGLQLRAE---SLIRGLNDEPHGARSLYIWNQDSPGIGPA-----LDDVSMDDLSLRFQTVKKVQPRFASDH-ARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHFFDGRIARKHRYKSLKREDISSVLPWLIEYTKAASARSRGPAREDRPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIK 421
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.080e-44 Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = 1
Query: 289 TPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
TPLS +R +KL +LP +L S DG+ +R+KR+ S+KRGDIS VLPWL+ T+A +AR R A + D+++ A ACRH GG+ +A ALL+D P N ++ + AKF ED + A A I AS+ G +P+ +++P+ L+ ++ S+++ S AGNDG FSHL+ I+NT G+E F + S WRR
Sbjct: 195 TPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAPEDTPDDKFKTAAQACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRR 393
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.970e-40 Identity = 93/265 (35.09%), Postives = 144/265 (54.34%), Query Frame = 1
Query: 85 WVASSPGTRIARVWQDLDRYPVADFKQRYETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRR--RMPGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRHKGGISNAVRALLSDDLEPANQNSFGKFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGS 873
W SPG A LD + R++T+ +V+ D A+L H +L+N +++ TPLS +R + L +LP +L S DG+ +R+KR S+KRGDIS LPWL+ T+A +AR R A + D++++ A ACRH GG+ +A RAL +D N ++ A+F ED + A A I AS+ G +P+ ++ P+ L+ ++ S+++ S AGNDG FSHL+ I+NT G+E F + S
Sbjct: 142 WNQDSPGIGPA-----LDDVRMDALTFRFQTVKKVQPRYASDH-ARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVITLWYLLPGILHSFDGRIARKKRHKSLKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALFADQPSLGNDETWACLKAEFPHEDPVQVEQAVAEAIAASRTEEEGGSAPRWRPETEFAPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSS 400
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.260e-28 Identity = 89/276 (32.25%), Postives = 143/276 (51.81%), Query Frame = 1
Query: 169 YETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRRRMPGAE----TPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEAAACRH---------KGGISNAVRALLSDDLEPANQNSFG------------------------KFSAKFGKEDAPTLAVAKAATITASQDSLSAGGDVACKPDDKYNPETLIAIVKSKNALSAAGNDGLCFSHLQCILNTSAGKEGFGPVVGSFWRR 885
++T+ +V+ D A+L H +L+N +++ GA TPL +R +KL +LP +L DG+ +R+KR+ S+KRGDIS VLPWL+ T+A +AR R A + D++++ A ACRH K G ++V L + + A+ S G K +A+ D P A+A+A I AS+ G +P+ +++P+ L+ ++ S+++ S AG+DG FSHL+ I NT G+E F + S WRR
Sbjct: 354 FQTVKKVQPRFASDH-ARLQTHVLHLVNKQLAEGG--GASLATGTPLPTIRVIKLWYLLPGILHFFDGRIARKKRYKSLKRGDISSVLPWLIEYTKAASARSRDPAREDTPDDKFKRAAQACRHXRKKRYKSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPLPAIAEA--IAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGSDGQRFSHLKSIANTKIGREEFSNAMSSLWRR 624
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Match: A0A6H5JXI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI5_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.940e-13 Identity = 44/117 (37.61%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 169 YETIVQVKHGLQRDLIAQLFLHCTNLLNHEVSRR--RMPGAETPLSLLRAVKLNDILPALLPSTDGQFSRRKRFLSVKRGDISVVLPWLMACTEAPAARRRSMAGSTSTADRYRKEA 513
++T+ +V+ D A+L H +L+N +++ TPLS +R +KL +LP +L S DG+ +R+KR+ S+KRGDIS VLPWL+ T+A +AR R A + D++++ A
Sbjct: 3 FQTVKKVQPRFASDR-ARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAA 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28669.7812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28669.7812.1 >prot_H-paniculata_contig28669.7812.1 ID=prot_H-paniculata_contig28669.7812.1|Name=mRNA_H-paniculata_contig28669.7812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp YVVQEDPSSRERVEVFGGVVPAITPQPGWVASSPGTRIARVWQDLDRYPVback to top mRNA from alignment at H-paniculata_contig28669:2104..2997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28669.7812.1 ID=mRNA_H-paniculata_contig28669.7812.1|Name=mRNA_H-paniculata_contig28669.7812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at H-paniculata_contig28669:2104..2997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28669:2104..2997+ >mRNA_H-paniculata_contig28669.7812.1 ID=mRNA_H-paniculata_contig28669.7812.1|Name=mRNA_H-paniculata_contig28669.7812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig28669:2104..2997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |