mRNA_H-paniculata_contig28629.7803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28629.7803.1
Unique NamemRNA_H-paniculata_contig28629.7803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A2N9IBW6_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBW6_FAGSY)

HSP 1 Score: 247 bits (631), Expect = 6.360e-70
Identity = 179/546 (32.78%), Postives = 272/546 (49.82%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHD---GMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSP----IRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKG---EDLFEP--KKSCL----------------LSYPRSF---PISPDTY---------------------------IDMFKRNISQRFRMKDLGSLSRVMGIELRRDRPNGIITISQGSYIREVLKRYSFDEFRGVPTPV 1461
            L LVHTD+ GP    S GG R+ V F+DD SR   VY L+ KSEV    +++   V   + L++K LRSD G  Y    F++FCA NGI+ E +   TPQQN VAER  R++ E AR+  + A +   +WA+A+ +  Y +NR P+ P     P E W G+   L +L+VFGC +YV   S  R KLD K+    F+GY +++  Y  +  +N+ V  SRNV F+E+         +  D     +  E  + + FS    +    N+G    ++A+P VE           +   T + S R  + P+  SP    I      EP+S  EAL+  ++ +W  A+++E   L+   TWE  +   LP  +KA   KW+++ K + DGS  RYKARLV +GF Q +G    D+F P  K + +                L    +F    +  D Y                           I+  K+ +S++F MKDLG   +++G+ + RDR NG + +SQ  Y++++L R+S DE + V TP+
Sbjct:   62 LELVHTDLWGPSPIASLGGSRYYVTFIDDSSRKVWVYFLKNKSEVFETFKKWRAMVETETDLKLKCLRSDNGGEYINGGFKEFCAANGIRMEKTIPRTPQQNGVAERMNRTLNERARSMRLHAGLPETFWADAVNTAAYLINRGPSVPLEFRIPEEVWSGKEVNLSYLKVFGCVSYVHIDSDARSKLDAKSRKCFFIGYGDETFGYRFWDDQNRKVIRSRNVIFNEQVMYKDRSSTKLDDVKVEQKKSEFVNLDEFS----NNTMQNSGQEEKENADPQVEQC---------TPTITVRRSSRNIRPPQRFSPSLFYILLTDGGEPESYDEALQIEDSIKWELAMKDEMNSLMTSQTWELTE---LPQRKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEGVDYTDIFSPVVKLTTIRLVLGIVAAENLHLEQLDVKTAFLHGDLEEDIYMQSATGIHSARKGEPNDMLIAGSSIEEINNLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPL 590          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 243 bits (619), Expect = 1.310e-66
Identity = 159/430 (36.98%), Postives = 232/430 (53.95%), Query Frame = 1
Query:    1 LALVHTDIAGPM-DKSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTM---KDAEPAVEDAPLAETAAPASGGNTT---KHSGREAQRP--------------------RDQSPIRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFE 1209
            L LVHTDI GP+   S  G R+ + F+DDYSR    + L +KSE L A ++F+    R  GL +  LRSD+G  Y    F+ +C +NGIK++ +AAYTPQQN +AER  RSI  MAR  M+  S+  R+W EA++  V+ LNR+P+      TP E+W    P ++H+RVFGC AY +   ++R KLD+K+   VF+G  ++S +Y +Y+ E K + +SR+VRFDE           + DG+R  EA + +       D    N  + T+   ++ +P   +AP   T A  +   T    + SGR+ Q P                     D++ +      +P +  EA+K   +E+WR A+E E G + E  TWE  +P   PA  K    KWIFK K  E G V ++KARLV +G+ Q +G D  E
Sbjct:  499 LQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDESRKWDWEESALD-DGVRWEEALTNSEAG----DSGENNGEEETLNQPEEVDPENVNAPTEVTQAETTTDQTVAARETSGRQRQTPVWMKDYVSGTAGEASFFVIDDDEALMMYTTAEDPDTFEEAVK---SEKWRKAMEAEIGSIEENQTWELVEP---PAEAKVIGVKWIFKTKFNEKGEVDKFKARLVAKGYHQRQGVDFHE 917          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A2N9I0R0_FAGSY (Integrase catalytic domain-containing protein n=13 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I0R0_FAGSY)

HSP 1 Score: 239 bits (610), Expect = 9.430e-66
Identity = 168/542 (31.00%), Postives = 259/542 (47.79%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHD---GMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKG---EDLFEP-----------------------------------KKSCLLSYPRSFPISPDTYIDM-------------FKRNISQRFRMKDLGSLSRVMGIELRRDRPNGIITISQGSYIREVLKRYSFDEFRGVPTPV 1461
            L LVHTD+ GP    S GG R+ V F+DD SR   VY L+ KSEV    +++   V   + L++K LRSD G  Y    F++FCA NGI+ E +   TPQQN VAER  R++ E AR+  + A +   +WA+A+ +  Y +NR P+ P     P E W G+   L +L+VFGC +YV   S  R KLD K+    F+GY +++  Y  +  +N+ V  SRNV F+E+         +  D     +  E  + + FS    +    N+G    ++A+P VE    A T                            +A  +P    +++K      W  A+++E   L+   TWE  +   LP  +KA   KW+++ K + DGS  RYKARLV +GF Q +G    D+F P                                   ++   +S P+ F +     + +              K+ +S++F MKDLG   +++G+ + RDR NG + +SQ  Y++++L R+S DE + V TP+
Sbjct:  377 LELVHTDLWGPSPIASLGGSRYYVTFIDDSSRKVWVYFLKNKSEVFETFKKWRAMVETETDLKLKCLRSDNGGEYINGGFKEFCAANGIRMEKTIPRTPQQNGVAERMNRTLNERARSMRLHAGLPETFWADAVNTAAYLINRGPSVPLEFRIPEEVWSGKEVNLSYLKVFGCVSYVHIDSDARSKLDAKSRKCFFIGYGDETFGYRFWDDQNRKVIRSRNVIFNEQVMYKDRSSTKLDDVKVEQKKSEFVNLDEFS----NNTMQNSGQEEKENADPQVEQCTPAITV--------------------------RRAMMKPLQIEDSIK------WELAMKDEMNSLMTSQTWELTE---LPQRKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEGVDYTDIFSPVVKLTTIRLVLGIVATENLHLEQLDVKTAFLHGDLEEDIYMSQPQGFIVQGKENLMICSLQGPVLRRLTTLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPL 878          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A2Z7B3E6_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3E6_9LAMI)

HSP 1 Score: 226 bits (576), Expect = 3.730e-64
Identity = 149/409 (36.43%), Postives = 216/409 (52.81%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSG-----REAQRPRDQSPIRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFE 1209
            L LVH D+ GP+  +SFG   + V+F+DD+SR   VY L+ KSE   A ++F+  V + SG  IK LR+D+G  +T   F  FC  +GI++  +   +PQQN VAER  R+I  MAR  + + +MS  +WAE +   VY  NR+PT+     TP E W G+TP + HLR+FG  AY     Q+R KLDD++   VF+GY+E+S  Y ++S +++ + +SR+V FDE D     R + E+D        S + F    ++       +   +D  P      L+ T   +SG  T K+        E Q     +     A  EP S  EA K    E+WR A++EE   +V+  TWE      LP   +    KW++K K   +G V RYK RLV +G+ Q  G D  E
Sbjct:   89 LQLVHADVCGPIKPQSFGKSCYFVLFIDDFSRKTWVYFLKYKSEAFDAFKKFKTLVEKESGYEIKALRTDRGGEFTSNEFNSFCELHGIRRPLTVPRSPQQNGVAERKNRTILNMARTMLKSKNMSKEFWAEVVACAVYLSNRSPTKSLKNVTPQETWSGQTPGVHHLRIFGSIAYAQVPEQERSKLDDRSRKLVFIGYNENSKGYKLFSPDSRRIVISRDVEFDE-DATWNWRSKTEND--------SYDIFPYFDEETDMEQEVE--QQDPTPPPSSG-LSNTPGSSSGEKTPKYRSLADIYNETQAIDGMNLFCLLADAEPLSFDEAEKD---EKWRRAMDEEIHAIVKNDTWELTS---LPKNHQVIGVKWMYKAKKNANGEVERYKTRLVAKGYKQKHGVDYDE 479          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 234 bits (597), Expect = 1.080e-63
Identity = 153/442 (34.62%), Postives = 236/442 (53.39%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQL-SRNVRFDEEDFVTG---HRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQA-------RREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFEPKKSCLLSYPR-----SFPISPDTYID 1275
            L L+H+D+ GPM   SF G ++ + F+DDY+RM   Y +R KSEVL   + F++ V   + L+IK LR+D G  Y  K F+ F  ++GIK + +  Y+PQQN VAER+ R+I E  R  +  A +  R+WAEAL + +Y  N++P++     TP EKW G    L +LR FGC AY M  +++R+KLD K    +F+GY  +S  Y +   EN S  + SR+V+F E         ++G +  D   N+   S+N   + S+D     N  S ++ ++    D   +  +      + T +     Q+  D     + A         EP++  +AL GP+AE WR AI +E+    +   W       LPAG+KA + KW+FK+KL  +G +  YKARLV +GF+Q  G D ++   S ++ Y       +  ++ D YID
Sbjct:  487 LGLIHSDLCGPMSVNSFSGAKYLLTFIDDYTRMTFGYFIRNKSEVLPVFKIFKKFVENQTNLKIKMLRTDNGREYVNKDFQLFLQEHGIKHQTTVPYSPQQNGVAERANRTIIEAGRCMLQEAGLDRRFWAEALNTAIYIKNKSPSKAVRGTTPEEKWSGNKVNLSNLRTFGCVAYAMIPNEKRKKLDAKCKQYIFVGYCSESKGYRLIDPENPSKCIKSRDVQFLEGKMYKNLVLNKGNKTSDCELNI---SSNEDDLNSNDINDQVNPTSVIESSDSNSADTSASGCSFIDDPDDVTWNPDMTLQQSSDSDDTVSIAVAMTACHNGEPQTIQDALSGPDAEHWRKAIADEYKSFEKNKAWNLT---LLPAGKKAVKCKWVFKKKLGSEGELLHYKARLVAKGFTQEYGID-YKETYSPVVRYSTIRTLIALAVNLDLYID 921          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 234 bits (597), Expect = 1.110e-63
Identity = 161/464 (34.70%), Postives = 231/464 (49.78%), Query Frame = 1
Query:    1 LALVHTDIAGPMDKS-FGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEED------------------------FVTGHRGQQEHDGMRN---------------------------------------MEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGED 1200
            L ++H+D+ GPM+++  GGCR+ +  +DD+SR   VY L++KSEV   +R++ + V    G + + +RSDQG  Y  K  R+FCAD GIK EF+AAY+PQQN VAER  RS+ EM R  +  A M  R+WAEA+ +  Y  NR P+   +R TP E W+G+ P L +LR+FGC  YV+  S +R+KLD KA    F+GY  +  +Y + +++   +Q+SR+VRF E D                        +      Q+    + N                                        EA +A P +VL  D          M  A P V   P+  +    +G    ++         ++  +  +   EPK+  EA+ GP++ EW++A+ EE     E GTWE  +   LP  RKA  +KWIFK K  EDG   RYKARLV QGF Q  G D
Sbjct:  469 LDIIHSDVCGPMEETTLGGCRYYMTLIDDHSRYTFVYFLKKKSEVENKIREYVKLVQNQFGRKPRIIRSDQGGEYFSKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPSAAVDR-TPFEIWFGKKPDLTNLRLFGCVGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNTKTGEIQISRDVRFLEIDDGSKEQTYGDPKIEDNPTESVEIEWSLDETKQEAKTNVANETTSESEFYGWDCSDDGWPRGFXXXXXXXXXXXXXXXXXTEAGAAEPEAVL--DVIPE-----AMPAAVPVVSSTPVRRSQRATAGVPPARYD--------EEVYLAKECITEPKTYKEAVSGPQSAEWKSAMAEEMQSHHENGTWELAE---LPPHRKAIGSKWIFKCKADEDGHFVRYKARLVAQGFCQKFGTD 913          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A0V0T3I0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0T3I0_9BILA)

HSP 1 Score: 230 bits (587), Expect = 1.100e-62
Identity = 163/427 (38.17%), Postives = 224/427 (52.46%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEH-DGMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNT----TKHSGREAQRP-RDQSPIR-----------TQARRE--PKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKG---EDLFEP 1212
            L LVH+DI GPM   S GG R+ + F+DD+SR   VY L+ K+E L   + F   V R +  R+K LR+D G  Y    F +F    GI+ E +   TPQQN VAER  R++ E AR  +I A++S   WAEA+ +  Y  NR PT+   + TP E W G  P L HL++FGC A V   S QR+K D K+   +F+GY E S  Y     + K + ++R+V+F E  F      ++E  + + N +          S D        ST  D  P+V   P  +T +  S G +     K S  E +RP R++ P R           TQ R +  P S  EAL  P+A+EW  AI EE     E  +WE   P  LP  +KA ++KW+FK K KEDG++ + KARLV +G+SQ +G   ED F P
Sbjct:  482 LELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLMRKGIRHERTIPETPQQNGVAERMNRTLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKIFGCLAMVHVASGQRKKWDPKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESRFPGTQSSKEESTNSLMNPDVGEEAVIVWTSQDTG------STEMDPNPSV--PPKVDTDSNESTGQSPQPSVKTSPEELRRPLRNRFPNRNIFNADFLLFQTQVREQSDPISYEEALNRPDAKEWLKAINEELASHHENQSWE---PAVLPPHKKAIKSKWVFKTKYKEDGTIEKRKARLVARGYSQRQGIDYEDTFAP 897          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 227 bits (578), Expect = 2.410e-62
Identity = 149/408 (36.52%), Postives = 215/408 (52.70%), Query Frame = 1
Query:    7 LVHTDIAGPMDK-SFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQAR------REPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFE 1209
            L HTD+ GP++  S  G ++ +  +DD+SR   +Y L++KSEV   +  + +          K +RSDQG  Y+ K  + F    GIK +++A+Y+PQQN VAER  RS+ EM R  +  A +  +YWAEA+ + VY  N +PT+PRN  TP E W+G  PK++HLR+FGC A+      +R+KL   A    FLGY  D  +Y +       + +SR+V+F E+      R +  HD  R     S  P  ++ D      N  +    AEP V+ A   ET    S  ++     R  +  +   P R  A        +P + +EA++  E+  WR A++EE   L    TWE     RLP GRKA   KW +KRK  E+G + RYKARLV QG+SQ  G+D  E
Sbjct:   38 LTHTDVCGPIETPSCQGYKYFMTMIDDFSRHCTIYFLKEKSEVTTKIMDYVKMAKTQFRKTPKAIRSDQGGEYSSKNLQDFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVKFIEK-APCSERAK--HD--RETRHQSKKPQEIIID-TTLKENPITIETQAEPEVQPA-FEETREIVSEIDSDTEPRRSTRPTKGIPPDRLMANVIKHQIEQPHTYSEAIESTESTAWRAAMQEEINALQGNDTWELV---RLPLGRKAVGCKWTYKRKENENGEIVRYKARLVAQGYSQKFGQDYDE 434          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 227 bits (579), Expect = 4.300e-62
Identity = 150/410 (36.59%), Postives = 218/410 (53.17%), Query Frame = 1
Query:    1 LALVHTDIAGPM-DKSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTMKDAEPAVEDA-PLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQ-----ARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFE 1209
            L LVH DI GP    SF   R+ ++FVDD+SRM  VY L QKSE     +QF+      SG  +K LR+D+G  +T   F ++C  NGIK+E +A YTPQQN VAER  R+I EMAR+ +   S+ N +WAEA+ + V+ LNR+PT+     TP E W+   PK+D  ++FGCTAY    SQ+R K D+K    +F+GY + S +Y +     KS+ +SR+V FDE                  ++A     + +  +        DS+  +    ++   P A TA P+S  +T + + R     R  + I        +  EP+   EA+K      W+ A++EE  V+ +  TWE  D    P  +     KW++K K  EDGS+ ++KARLV +G+SQ  G D  E
Sbjct:  183 LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE------------------LKAWKWENYDI--EVPRFFEEPDSSHSEETQFLQSPIPSAGTADPSSPDSTPRLNART----RSLADIYESCDLALSALEPQKFEEAVK---ENIWQDAMDEEIRVIKKNRTWELVD---RPKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNE 562          
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Match: A0A5H2Y9D5_PRUDU (Integrase catalytic domain-containing protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y9D5_PRUDU)

HSP 1 Score: 223 bits (568), Expect = 6.390e-62
Identity = 152/418 (36.36%), Postives = 225/418 (53.83%), Query Frame = 1
Query:    1 LALVHTDIAGPMD-KSFGGCRFTVIFVDDYSRMHKVYTLRQKSEVLWALRQFERDVARVSGLRIKRLRSDQGE*YTVKPFRQFCADNGIKQEFSAAYTPQQNDVAERSWRSIFEMARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENKSVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDXXXXNNGDSTMKD---AEPAVED------APLAETAAPASGGNTTKHSGR-EAQRPRDQSPIRTQARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRKATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKG---EDLFEP 1212
            L LVH+D+ GP    S GG  + V F+DD+SR   VY L+ KSEV    ++++  V   +GL+IKRLR+D G  Y    F++FC + GI+ E +   TPQ N VAER  R++ E AR+  I + +  ++WAEA+ +  Y +NR P+ P     P E W G+  KL HL+VFGC AYV    Q R KLD K+    F+GY ED   Y I+ +ENK V  SR+V F+E      ++ + ++D     ++    P  V +DD       DS + +   A P +E+      A  ++T  P++     + S R      R  + +      EP+   EA +  +A +W  A+++E   L+   TWE  +   LP G+KA   KW+++ K + DGS  RYKARLV +GF Q +G    D+F P
Sbjct:   43 LELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIFNERMM---YKDRHKNDTSNTEQSV---PIFVDTDDVP-----DSLVTEPMVASPQLEELVGQSSAQQSDTLQPSTPAPVLRRSSRPHVPNRRYMNYLLLTDGGEPECYDEACQTGDASKWELAMKDEMRSLISNQTWELAE---LPVGKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEGVDYTDIFAP 445          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28629.7803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9IBW6_FAGSY6.360e-7032.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2IM54_9BRAS1.310e-6636.98Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A2N9I0R0_FAGSY9.430e-6631.00Integrase catalytic domain-containing protein n=13... [more]
A0A2Z7B3E6_9LAMI3.730e-6436.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A0N1ICY1_PAPMA1.080e-6334.62Retrovirus-related Pol polyprotein from transposon... [more]
UPI0016589FE91.110e-6334.70uncharacterized protein LOC118514016 isoform X1 n=... [more]
A0A0V0T3I0_9BILA1.100e-6238.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2M4CK12_ANODA2.410e-6236.52Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1QWW3_PRUDU4.300e-6236.59Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A5H2Y9D5_PRUDU6.390e-6236.36Integrase catalytic domain-containing protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28629contigH-paniculata_contig28629:1184..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score155.2
Seed ortholog evalue5.9e-35
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons4
Model size1461
Cds size1122
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28629.7803.1prot_H-paniculata_contig28629.7803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28629 1523..2986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.8404877-UTR-H-paniculata_contig28629:1183..15221622929870.8404877-UTR-H-paniculata_contig28629:1183..1522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28629 1184..1522 +
1691481047.814434-UTR-H-paniculata_contig28629:1183..15221691481047.814434-UTR-H-paniculata_contig28629:1183..1522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28629 1184..1522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.855861-CDS-H-paniculata_contig28629:1522..19191622929870.855861-CDS-H-paniculata_contig28629:1522..1919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 1523..1919 +
1691481047.8246-CDS-H-paniculata_contig28629:1522..19191691481047.8246-CDS-H-paniculata_contig28629:1522..1919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 1523..1919 +
1622929870.8690822-CDS-H-paniculata_contig28629:2057..22661622929870.8690822-CDS-H-paniculata_contig28629:2057..2266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2058..2266 +
1691481047.8372989-CDS-H-paniculata_contig28629:2057..22661691481047.8372989-CDS-H-paniculata_contig28629:2057..2266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2058..2266 +
1622929870.8840437-CDS-H-paniculata_contig28629:2356..26231622929870.8840437-CDS-H-paniculata_contig28629:2356..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2357..2623 +
1691481047.8475988-CDS-H-paniculata_contig28629:2356..26231691481047.8475988-CDS-H-paniculata_contig28629:2356..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2357..2623 +
1622929870.8959444-CDS-H-paniculata_contig28629:2737..29861622929870.8959444-CDS-H-paniculata_contig28629:2737..2986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2738..2986 +
1691481047.8649445-CDS-H-paniculata_contig28629:2737..29861691481047.8649445-CDS-H-paniculata_contig28629:2737..2986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28629 2738..2986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28629.7803.1

>prot_H-paniculata_contig28629.7803.1 ID=prot_H-paniculata_contig28629.7803.1|Name=mRNA_H-paniculata_contig28629.7803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
MARANMITASMSNRYWAEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPK
LDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYCIYSSENK
SVQLSRNVRFDEEDFVTGHRGQQEHDGMRNMEAASANPFSVLSDDDDDEN
NGDSTMKDAEPAVEDAPLAETAAPASGGNTTKHSGREAQRPRDQSPIRTQ
ARREPKSAAEALKGPEAEEWRTAIEEEWGVLVEIGTWESEDPGRLPAGRK
ATRTKWIFKRKLKEDGSVARYKARLVTQGFSQVKGEDLFEPKKSCLLSYP
RSFPISPDTYIDMFKRNISQRFRMKDLGSLSRVMGIELRRDRPNGIITIS
QGSYIREVLKRYSFDEFRGVPTPV
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mRNA from alignment at H-paniculata_contig28629:1184..2986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28629.7803.1 ID=mRNA_H-paniculata_contig28629.7803.1|Name=mRNA_H-paniculata_contig28629.7803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1803bp|location=Sequence derived from alignment at H-paniculata_contig28629:1184..2986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGCTGGTGCACACCGACATAGCCGGACCGATGGACAAGTCCTTCGG AGGGTGTCGCTTCACCGTCATCTTCGTCGACGACTACAGCAGAATGCACA AAGTCTATACCCTACGACAAAAGTCGGAGGTGCTATGGGCCCTGAGGCAA TTCGAGAGAGACGTAGCGAGGGTAAGCGGTTTGCGGATTAAGCGCCTTCG GTCGGATCAGGGAGAATAATATACTGTGAAGCCTTTTAGGCAATTCTGCG CGGATAATGGCATCAAGCAGGAGTTCTCTGCCGCCTACACACCGCAACAA AATGATGTAGCGGAGCGCAGCTGGCGCAGTATTTTCGAGATGGCAAGAGC TAACATGATCACCGCCAGCATGAGTAATCGATATTGGGCGGAAGCGTTGC GCTCGGTAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCGCAACCGA GGAACGCCAAGTGAAAAATGGTACGGCGAGACACCAAAGTTGGACCACCT TCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAATCGCAACAGAGAC GCAAGCTCGACGACAAAGCGTGGGCGGGGGTGTTTCTGGGGTACGACGAG GACAGCCCGAGTTATTGCATATATAGCTCTGAAAACAAGAGCGTCCAGTT GAGCAGGAACGTGAGATTTGACGAAGAGGACTTTGTAACGGGTCATCGCG GACAGCAGGAGCACGACGGGATGCGCAATATGGAAGGTTGGTTTTCAGCA CCGCCAGTCACGCCAGCGGTCACTCGATCCCGCGCCCAAGGCGAGCAAGG CAGCGTAACTACCACGGAAGACCGGACGTCGGCGTCACAAATGCCGCCGA TATTACCGACACATTCGCTGCCAGCCGCCAGCGCAAACCCATTCAGTGTC TTGAGCGATGACGATGATGACGAAAATAACGGCGACTCCACGATGAAGGA TGCGGAACCCGCAGTCGAAGACGCACCATTAGCAGAGACAGCGGCACCCG CGTCGGGTGGGAACACCACGAAGCATTCAGGGAGGGAGGCGCAGCGTCCG CGAGATCAGTCACCAATTCGAACACAGGCGAGAGTGAGGAAGAACTGCGA AGAAGATCCAGGCGCTACTGCGCGCGTGGCTAAGATGGAAGCCACTGGCA ACCTTACAGAGGTGGTATCGAAGAGGGAGCCGAAATCGGCAGCAGAAGCA TTAAAGGGTCCAGAGGCGGAAGAATGGCGCACAGCAATCGAGGAAGAATG GGGAGTGTTGGTGGAAATTGGAACATGGGAAAGCGAAGACCCGGGGAGGT TACCGGCAGGGCGGAAGGCGACTCGTACGAAATGGATTTTCAAGCGGAAA CTGAAGGAGGATGGCAGCGTGGCACGCTACAAAGCACGACTGGTGACTCA AGGGTTTTCACAGGTGAAGGGTGAAGATTTATTTGAACCAGTGCCCCCCT AGCTCGCATGTCGATGTTGTGTATTGTTTTTAGCCTGGCCCCCGAGCATG ATTTCCAATTAGAAGGCATGGACGTAGATGTGGCGTATTTGGACGCCCCA CTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCGGAGTTTCCCTATTTCTC CCGACACATACATAGACATGTTCAAGCGTAACATAAGTCAGCGTTTTAGG ATGAAAGACTTGGGCTCTCTCTCGCGCGTGATGGGAATAGAACTACGACG TGACCGCCCTAATGGTATCATAACGATATCGCAGGGTAGCTACATCCGCG AGGTACTAAAAAGATACAGTTTTGACGAATTTCGAGGGGTACCCACCCCT GTA
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Coding sequence (CDS) from alignment at H-paniculata_contig28629:1184..2986+

>mRNA_H-paniculata_contig28629.7803.1 ID=mRNA_H-paniculata_contig28629.7803.1|Name=mRNA_H-paniculata_contig28629.7803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig28629:1184..2986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCTAACATGATCACCGCCAGCATGAGTAATCGATATTGGGC
GGAAGCGTTGCGCTCGGTAGTGTACTGCCTAAATCGCGCCCCGACGCGAC
CGCGCAACCGAGGAACGCCAAGTGAAAAATGGTACGGCGAGACACCAAAG
TTGGACCACCTTCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAATC
GCAACAGAGACGCAAGCTCGACGACAAAGCGTGGGCGGGGGTGTTTCTGG
GGTACGACGAGGACAGCCCGAGTTATTGCATATATAGCTCTGAAAACAAG
AGCGTCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTTGTAAC
GGGTCATCGCGGACAGCAGGAGCACGACGGGATGCGCAATATGGAAGATG
GCAAGAGCTAACATGATCACCGCCAGCATGAGTAATCGATATTGGGCGGA
AGCGTTGCGCTCGGTAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGC
GCAACCGAGGAACGCCAAGTGAAAAATGGTACGGCGAGACACCAAAGTTG
GACCACCTTCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAATCGCA
ACAGAGACGCAAGCTCGACGACAAAGCGTGGGCGGGGGTGTTTCTGGGGT
ACGACGAGGACAGCCCGAGTTATTGCATATATAGCTCTGAAAACAAGAGC
GTCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTTGTAACGGG
TCATCGCGGACAGCAGGAGCACGACGGGATGCGCAATATGGAAGCCGCCA
GCGCAAACCCATTCAGTGTCTTGAGCGATGACGATGATGACGAAAATAAC
GGCGACTCCACGATGAAGGATGCGGAACCCGCAGTCGAAGACGCACCATT
AGCAGAGACAGCGGCACCCGCGTCGGGTGGGAACACCACGAAGCATTCAG
GGAGGGAGGCGCAGCGTCCGCGAGATCAGTCACCAATTCGAACACAGGCG
AGACCGCCAGCGCAAACCCATTCAGTGTCTTGAGCGATGACGATGATGAC
GAAAATAACGGCGACTCCACGATGAAGGATGCGGAACCCGCAGTCGAAGA
CGCACCATTAGCAGAGACAGCGGCACCCGCGTCGGGTGGGAACACCACGA
AGCATTCAGGGAGGGAGGCGCAGCGTCCGCGAGATCAGTCACCAATTCGA
ACACAGGCGAGAAGGGAGCCGAAATCGGCAGCAGAAGCATTAAAGGGTCC
AGAGGCGGAAGAATGGCGCACAGCAATCGAGGAAGAATGGGGAGTGTTGG
TGGAAATTGGAACATGGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGG
CGGAAGGCGACTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGA
TGGCAGCGTGGCACGCTACAAAGCACGACTGGTGACTCAAGGGTTTTCAC
AGGTGAAGGGTGAAGATTTATTTGAACCAAGGGAGCCGAAATCGGCAGCA
GAAGCATTAAAGGGTCCAGAGGCGGAAGAATGGCGCACAGCAATCGAGGA
AGAATGGGGAGTGTTGGTGGAAATTGGAACATGGGAAAGCGAAGACCCGG
GGAGGTTACCGGCAGGGCGGAAGGCGACTCGTACGAAATGGATTTTCAAG
CGGAAACTGAAGGAGGATGGCAGCGTGGCACGCTACAAAGCACGACTGGT
GACTCAAGGGTTTTCACAGGTGAAGGGTGAAGATTTATTTGAACCAAAGA
AGAGCTGTTTGTTAAGCTACCCCCGGAGTTTCCCTATTTCTCCCGACACA
TACATAGACATGTTCAAGCGTAACATAAGTCAGCGTTTTAGGATGAAAGA
CTTGGGCTCTCTCTCGCGCGTGATGGGAATAGAACTACGACGTGACCGCC
CTAATGGTATCATAACGATATCGCAGGGTAGCTACATCCGCGAGGTACTA
AAAAGATACAGTTTTGACGAATTTCGAGGGGTACCCACCCCTGTAAAGAA
GAGCTGTTTGTTAAGCTACCCCCGGAGTTTCCCTATTTCTCCCGACACAT
ACATAGACATGTTCAAGCGTAACATAAGTCAGCGTTTTAGGATGAAAGAC
TTGGGCTCTCTCTCGCGCGTGATGGGAATAGAACTACGACGTGACCGCCC
TAATGGTATCATAACGATATCGCAGGGTAGCTACATCCGCGAGGTACTAA
AAAGATACAGTTTTGACGAATTTCGAGGGGTACCCACCCCTGTA
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