mRNA_H-paniculata_contig28620.7801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28620.7801.1
Unique NamemRNA_H-paniculata_contig28620.7801.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28620.7801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28620contigH-paniculata_contig28620:2575..3108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.7338178-CDS-H-paniculata_contig28620:2574..26601622929870.7338178-CDS-H-paniculata_contig28620:2574..2660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28620 2575..2660 -
1691481047.767515-CDS-H-paniculata_contig28620:2574..26601691481047.767515-CDS-H-paniculata_contig28620:2574..2660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28620 2575..2660 -
1622929870.7486644-CDS-H-paniculata_contig28620:3008..31081622929870.7486644-CDS-H-paniculata_contig28620:3008..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28620 3009..3108 -
1691481047.776143-CDS-H-paniculata_contig28620:3008..31081691481047.776143-CDS-H-paniculata_contig28620:3008..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28620 3009..3108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28620.7801.1prot_H-paniculata_contig28620.7801.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28620 2575..3108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28620.7801.1

>prot_H-paniculata_contig28620.7801.1 ID=prot_H-paniculata_contig28620.7801.1|Name=mRNA_H-paniculata_contig28620.7801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
IYLVRSRGAGSIPEELGGLTSLTSLSIYGRKITGSIPKELGGLTSLTSLR
LCSCNLTGESR*
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mRNA from alignment at H-paniculata_contig28620:2575..3108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28620.7801.1 ID=mRNA_H-paniculata_contig28620.7801.1|Name=mRNA_H-paniculata_contig28620.7801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig28620:2575..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACCTCGTGCGTTCTCGTGGCGCAGGCTCTATCCCGGAGGAGCTGGG
AGGTCTCACGTCTCTCACTTCGTTATCTATTTATGGCCGCAAAATCACTG
GTGAGTCACGTCGCAAAGCCTTTCGCGGAAGATGATGAGCGAGATTCGCG
AGAAGGTGCTCTAGGGAGGAGGACGTGTAGGCGATATCGTCGTATTCGGA
GTGTAGTTGGATCATATTTTCCCACGCTGGTGGTGTGTGGGTCGGTATTT
AGGGCCAGACCCGAGGCCGAATCTGGTGGGCGGGGTCTTACCGGGGTCAG
CGGAATTCGTGTATGGCTGTATCGTCTCCATGCAGTGTTGTGTACGACGG
CTCCAGTCTCGTTTGGTCCAGATTTGTTGGATATGTGTATCTGTAGTGTT
CGGTCTGTGATGTGTACCCTATCTACCTCGTGCGTTCTCGTGGCGCAGGC
TCTATCCCGAAGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTGCGTCT
TTGTAGTTGCAACCTTACTGGTGAGTCACGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28620:2575..3108-

>mRNA_H-paniculata_contig28620.7801.1 ID=mRNA_H-paniculata_contig28620.7801.1|Name=mRNA_H-paniculata_contig28620.7801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig28620:2575..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACCTCGTGCGTTCTCGTGGCGCAGGCTCTATCCCGGAGGAGCTGGG
AGGTCTCACGTCTCTCACTTCGTTATCTATTTATGGCCGCAAAATCACTG
ATCTACCTCGTGCGTTCTCGTGGCGCAGGCTCTATCCCGGAGGAGCTGGG
AGGTCTCACGTCTCTCACTTCGTTATCTATTTATGGCCGCAAAATCACTG
GCTCTATCCCGAAGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTGCGT
CTTTGTAGTTGCAACCTTACTGGTGAGTCACGCTAGGCTCTATCCCGAAG
GAGCTGGGAGGTCTCACGTCTCTCACTTCGTTGCGTCTTTGTAGTTGCAA
CCTTACTGGTGAGTCACGCTAG
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