mRNA_H-paniculata_contig11223.780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11223.780.1
Unique NamemRNA_H-paniculata_contig11223.780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11223.780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11223contigH-paniculata_contig11223:3376..3720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.51387-UTR-H-paniculata_contig11223:3375..33991622928826.51387-UTR-H-paniculata_contig11223:3375..3399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11223 3376..3399 +
1691480635.7812023-UTR-H-paniculata_contig11223:3375..33991691480635.7812023-UTR-H-paniculata_contig11223:3375..3399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11223 3376..3399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.5283647-CDS-H-paniculata_contig11223:3399..37201622928826.5283647-CDS-H-paniculata_contig11223:3399..3720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11223 3400..3720 +
1691480635.7890036-CDS-H-paniculata_contig11223:3399..37201691480635.7890036-CDS-H-paniculata_contig11223:3399..3720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11223 3400..3720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11223.780.1prot_H-paniculata_contig11223.780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11223 3400..3720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11223.780.1

>prot_H-paniculata_contig11223.780.1 ID=prot_H-paniculata_contig11223.780.1|Name=mRNA_H-paniculata_contig11223.780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MFILFPRDQHKKSASVKNKEAGNSHISVKNSGRPYQAARKKRQLHSAASD
QNKNTKVVPKTSHAHGQSVLRRRSYPSPHLGVILATRCAFVKEQGYVFSA
SGPLSP*
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mRNA from alignment at H-paniculata_contig11223:3376..3720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11223.780.1 ID=mRNA_H-paniculata_contig11223.780.1|Name=mRNA_H-paniculata_contig11223.780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig11223:3376..3720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGCTCATAACGAGGACGGGACATGTTCATACTTTTTCCTCGAGATCA
GCACAAGAAGAGCGCCAGTGTCAAAAACAAGGAAGCTGGTAATTCCCATA
TTTCCGTTAAAAACAGCGGTCGTCCTTATCAAGCCGCTCGAAAAAAACGA
CAGTTACATAGCGCTGCTAGCGACCAAAACAAGAACACGAAGGTAGTTCC
CAAAACATCGCACGCTCATGGTCAGTCAGTCCTGCGACGTAGGAGCTACC
CTTCTCCACATCTGGGTGTAATCCTCGCCACCCGCTGTGCATTTGTGAAA
GAACAAGGTTACGTTTTCTCTGCCTCCGGTCCGCTCTCTCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11223:3376..3720+

>mRNA_H-paniculata_contig11223.780.1 ID=mRNA_H-paniculata_contig11223.780.1|Name=mRNA_H-paniculata_contig11223.780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig11223:3376..3720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATACTTTTTCCTCGAGATCAGCACAAGAAGAGCGCCAGTGTCAA
AAACAAGGAAGCTGGTAATTCCCATATTTCCGTTAAAAACAGCGGTCGTC
CTTATCAAGCCGCTCGAAAAAAACGACAGTTACATAGCGCTGCTAGCGAC
CAAAACAAGAACACGAAGGTAGTTCCCAAAACATCGCACGCTCATGGTCA
GTCAGTCCTGCGACGTAGGAGCTACCCTTCTCCACATCTGGGTGTAATCC
TCGCCACCCGCTGTGCATTTGTGAAAGAACAAGGTTACGTTTTCTCTGCC
TCCGGTCCGCTCTCTCCATAGATGTTCATACTTTTTCCTCGAGATCAGCA
CAAGAAGAGCGCCAGTGTCAAAAACAAGGAAGCTGGTAATTCCCATATTT
CCGTTAAAAACAGCGGTCGTCCTTATCAAGCCGCTCGAAAAAAACGACAG
TTACATAGCGCTGCTAGCGACCAAAACAAGAACACGAAGGTAGTTCCCAA
AACATCGCACGCTCATGGTCAGTCAGTCCTGCGACGTAGGAGCTACCCTT
CTCCACATCTGGGTGTAATCCTCGCCACCCGCTGTGCATTTGTGAAAGAA
CAAGGTTACGTTTTCTCTGCCTCCGGTCCGCTCTCTCCATAG
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