mRNA_H-paniculata_contig2862.7800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2862.7800.1
Unique NamemRNA_H-paniculata_contig2862.7800.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.690e-31
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    Y +KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:   13 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYHNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 137
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.120e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  148 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 272
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.790e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  134 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 258
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.830e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  202 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 326
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.650e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  125 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 249
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.660e-30
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R G+V FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  125 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 249
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.830e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  291 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 415
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.170e-29
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT  R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  254 VKHDVESGAPFTGARNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 378
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.190e-28
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT  R+  M+I++  G LR+A    YR+KG+L+DV HADPQ+  HL  G+AT D  AA  SEA K  HY R GHV FDER FKLT L VESFGRLG+   + + ++A+ V   +E
Sbjct: 1992 VKHDVESGAPFTGARNLSMDIVIRPGALRNAASSVYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFINELATHVAERRE 2116
[Close]
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.300e-28
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:    1 IRSMVEDGDRFTADRD*GMNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAAATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVASTVVGEQE 375
            ++  VE G  FT +R+  M+I++  G L +A    YR+KG+L+DV HADPQ+  HL  G+AT D +AA  SEA K  HY   GHV FDER FKLT L VESFGRLG+   + ++++A+  VG ++
Sbjct:  300 VKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYACPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2862.7800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KAD2_9PHAE5.690e-3148.00Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K198_9PHAE1.120e-3048.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN7_9PHAE1.790e-3048.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE2.830e-3048.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE3.650e-3048.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JPW7_9PHAE7.660e-3048.00Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE8.830e-3048.80Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS53_9PHAE2.170e-2948.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.190e-2849.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQ53_9PHAE1.300e-2848.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2862contigH-paniculata_contig2862:19106..19704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2862.7800.1prot_H-paniculata_contig2862.7800.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2862 19160..19516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.6569693-UTR-H-paniculata_contig2862:19105..191591622929870.6569693-UTR-H-paniculata_contig2862:19105..19159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2862 19106..19159 +
1691481047.737384-UTR-H-paniculata_contig2862:19105..191591691481047.737384-UTR-H-paniculata_contig2862:19105..19159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2862 19106..19159 +
1622929870.686626-UTR-H-paniculata_contig2862:19516..197041622929870.686626-UTR-H-paniculata_contig2862:19516..19704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2862 19517..19704 +
1691481047.759232-UTR-H-paniculata_contig2862:19516..197041691481047.759232-UTR-H-paniculata_contig2862:19516..19704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2862 19517..19704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.6732113-CDS-H-paniculata_contig2862:19159..195161622929870.6732113-CDS-H-paniculata_contig2862:19159..19516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2862 19160..19516 +
1691481047.7508094-CDS-H-paniculata_contig2862:19159..195161691481047.7508094-CDS-H-paniculata_contig2862:19159..19516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2862 19160..19516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2862.7800.1

>prot_H-paniculata_contig2862.7800.1 ID=prot_H-paniculata_contig2862.7800.1|Name=mRNA_H-paniculata_contig2862.7800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MNIIVSTGELRDALIKAYRDKGLLIDVAHADPQSAGHLERGNATIDDLAA
ATSEAHKSAHYVRRGHVFFDERCFKLTPLGVESFGRLGKFEEDLLEKVAS
TVVGEQEDDDVTSLSRNG*
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mRNA from alignment at H-paniculata_contig2862:19106..19704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2862.7800.1 ID=mRNA_H-paniculata_contig2862.7800.1|Name=mRNA_H-paniculata_contig2862.7800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at H-paniculata_contig2862:19106..19704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAGGAGCATGGTGGAGGACGGAGACCGGTTTACGGCGGACCGGGACTA
GGGGATGAACATTATCGTCTCAACAGGAGAGCTCCGAGATGCTCTCATCA
AGGCCTACCGTGACAAGGGTCTTCTGATCGACGTCGCGCACGCAGATCCC
CAGTCAGCAGGGCACCTGGAGCGCGGGAATGCTACCATTGACGACTTAGC
CGCCGCCACATCCGAGGCGCACAAAAGCGCGCACTACGTTCGAAGAGGAC
ACGTGTTCTTCGACGAGCGTTGTTTCAAACTTACCCCTCTCGGGGTGGAA
AGCTTTGGGCGTCTGGGGAAGTTCGAAGAGGATCTGCTTGAGAAGGTAGC
ATCCACTGTGGTGGGGGAACAGGAGGACGACGATGTTACGAGTCTAAGCC
GTAACGGGTAGGGCACGGCTAGAGGGTAACCTTTGCCGATGATCTGACGG
AAGTGAGATTAAGGGTCTTAACGTGTGAAGATTCTGTACTTTGCGGGTAC
AGTCTAAAACCGTAAGCTAAAACGGCCAAGTCACCTACAACCCAGAGACC
GAAGGCGGTTCTGGACGGCTATCCCCTAAGGCCTAAGGTTTAGGTGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2862:19106..19704+

>mRNA_H-paniculata_contig2862.7800.1 ID=mRNA_H-paniculata_contig2862.7800.1|Name=mRNA_H-paniculata_contig2862.7800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig2862:19106..19704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATTATCGTCTCAACAGGAGAGCTCCGAGATGCTCTCATCAAGGC
CTACCGTGACAAGGGTCTTCTGATCGACGTCGCGCACGCAGATCCCCAGT
CAGCAGGGCACCTGGAGCGCGGGAATGCTACCATTGACGACTTAGCCGCC
GCCACATCCGAGGCGCACAAAAGCGCGCACTACGTTCGAAGAGGACACGT
GTTCTTCGACGAGCGTTGTTTCAAACTTACCCCTCTCGGGGTGGAAAGCT
TTGGGCGTCTGGGGAAGTTCGAAGAGGATCTGCTTGAGAAGGTAGCATCC
ACTGTGGTGGGGGAACAGGAGGACGACGATGTTACGAGTCTAAGCCGTAA
CGGGTAGATGAACATTATCGTCTCAACAGGAGAGCTCCGAGATGCTCTCA
TCAAGGCCTACCGTGACAAGGGTCTTCTGATCGACGTCGCGCACGCAGAT
CCCCAGTCAGCAGGGCACCTGGAGCGCGGGAATGCTACCATTGACGACTT
AGCCGCCGCCACATCCGAGGCGCACAAAAGCGCGCACTACGTTCGAAGAG
GACACGTGTTCTTCGACGAGCGTTGTTTCAAACTTACCCCTCTCGGGGTG
GAAAGCTTTGGGCGTCTGGGGAAGTTCGAAGAGGATCTGCTTGAGAAGGT
AGCATCCACTGTGGTGGGGGAACAGGAGGACGACGATGTTACGAGTCTAA
GCCGTAACGGGTAG
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