mRNA_H-paniculata_contig28615.7798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28615.7798.1
Unique NamemRNA_H-paniculata_contig28615.7798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.890e-30
Identity = 65/77 (84.42%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G GLPIGVM CSDAAGEA A+A   E YWTSGRV  SEMAVMYRTNAQSRSFEEA LR+ALPFVVVGAQRFYERREV
Sbjct:  494 GDGLPIGVMVCSDAAGEAEAVAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREV 570          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A835Z3L0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-19
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    7 GLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            GLP+GVM C +AA EA+ IA Q   YWT G V  SEMAVMYRTNAQSR+ EEAFLR+ +P+ VV  Q+F+ RREV
Sbjct:  499 GLPLGVMTCYNAAQEAAEIAKQVSRYWTRGTVPLSEMAVMYRTNAQSRALEEAFLRQGVPYRVVDGQKFFARREV 573          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A497AZB6_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZB6_9CHLR)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-12
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G GLPI V +  D   E+  +  + +     G  S  + AVMYRTNAQSR+ EEAFLRR +P+ +VGA RFYERRE+
Sbjct:  309 GQGLPIIVFEAYDEVEESEFVVGEIQRLIARGLYSPGDFAVMYRTNAQSRTLEEAFLRRGMPYQLVGATRFYERREI 385          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A7C5RQI7_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5RQI7_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-12
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G G PI V +  D   EA+ +AS+ E+   +G+ + S+ AVMYRTNAQSR  EEAF+ R +P+ VVG  RFYERREV
Sbjct:  316 GPGHPIVVHETYDEMEEAAFVASEVESLVATGQYTFSDFAVMYRTNAQSRPLEEAFMIRGIPYRVVGGLRFYERREV 392          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A212R655_9CHLR (DNA helicase n=1 Tax=Thermoflexus hugenholtzii JAD2 TaxID=877466 RepID=A0A212R655_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 5.160e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G G PI + +  D   EA+ IA + +    +GR+   E+AVMYRTNAQSR+ EEAFL+  +P+ +VG  RFY+RREV
Sbjct:  314 GPGAPITLYEAFDEEDEAAFIARRVQELIEAGRIQPGEIAVMYRTNAQSRALEEAFLQAGIPYRLVGGVRFYQRREV 390          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A6B1AIF6_9BACT (DNA helicase n=7 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6B1AIF6_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.190e-12
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 AGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            AG PI V++C D   EA+ ++S+ EA   + R++  E AV+YRTNAQSR+FEEAF R  +P+ +VG   FYERREV
Sbjct:  418 AGDPIEVVRCDDERAEAAWVSSRIEAVRATRRLN--EFAVLYRTNAQSRAFEEAFRRSGIPYRIVGGVPFYERREV 491          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A535D503_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535D503_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 9.730e-12
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    7 GLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G P+ ++   D   EA+A++++ E       VS  E AV+YRTNAQSR+FEEAFLRR +P+ +VG  RFY+RREV
Sbjct:  591 GEPVRLISVYDEREEAAAVSNEVENLIGREGVSLGECAVLYRTNAQSRAFEEAFLRRGIPYQLVGGVRFYDRREV 665          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0LRT9_ACIC1 (ATP-dependent DNA helicase n=2 Tax=Acidothermus cellulolyticus TaxID=28049 RepID=A0LRT9_ACIC1)

HSP 1 Score: 68.2 bits (165), Expect = 1.320e-11
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G G+PI      D  GEA+ +A + +     G  +  ++AV YRTNAQSR FEEAFLR  LP+ VVG  RFYERREV
Sbjct:  349 GDGVPIVGFVADDEHGEAAFVAEEIDRLVDEGAATFKDIAVFYRTNAQSRVFEEAFLRVGLPYKVVGGVRFYERREV 425          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A7C2YSI9_9CHLR (DNA helicase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2YSI9_9CHLR)

HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G GLP  V +  D   EAS +A++ E      R      AVMYRTNAQSR  EEAFLRR +P+ +VG  RFYERREV
Sbjct:  314 GPGLPAVVYEAFDEVEEASFVAAEIERLAREERRPYRHFAVMYRTNAQSRPLEEAFLRRGIPYRLVGGVRFYERREV 390          
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A523HMJ9_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A523HMJ9_9CHLR)

HSP 1 Score: 67.8 bits (164), Expect = 1.800e-11
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
            G+G PI V +  D   EA  +  +   +  SG     + A+MYRTNAQSR+ EEAFLR  LP+ +VGAQRFY R+EV
Sbjct:  311 GSGAPILVHEAYDQDEEAQFVVEKISMFTLSGEAEPGDCAIMYRTNAQSRAIEEAFLRAGLPYRLVGAQRFYGRKEV 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP3_ECTSI2.890e-3084.42DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z3L0_9STRA1.010e-1964.00DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A497AZB6_9CHLR1.080e-1250.65DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A7C5RQI7_9CHLR1.480e-1253.25DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A212R655_9CHLR5.160e-1249.35DNA helicase n=1 Tax=Thermoflexus hugenholtzii JAD... [more]
A0A6B1AIF6_9BACT5.190e-1252.63DNA helicase n=7 Tax=Gemmatimonadales bacterium Ta... [more]
A0A535D503_9CHLR9.730e-1250.67DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]
A0LRT9_ACIC11.320e-1151.95ATP-dependent DNA helicase n=2 Tax=Acidothermus ce... [more]
A0A7C2YSI9_9CHLR1.760e-1153.25DNA helicase (Fragment) n=1 Tax=Chloroflexi bacter... [more]
A0A523HMJ9_9CHLR1.800e-1149.35DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28615contigH-paniculata_contig28615:158..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog2880.D7FLP3
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size231
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.5372133-CDS-H-paniculata_contig28615:157..3641622929870.5372133-CDS-H-paniculata_contig28615:157..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28615 158..364 -
1691481047.6824143-CDS-H-paniculata_contig28615:157..3641691481047.6824143-CDS-H-paniculata_contig28615:157..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28615 158..364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.5570912-UTR-H-paniculata_contig28615:364..3881622929870.5570912-UTR-H-paniculata_contig28615:364..388Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28615 365..388 -
1691481047.7057343-UTR-H-paniculata_contig28615:364..3881691481047.7057343-UTR-H-paniculata_contig28615:364..388Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28615 365..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28615.7798.1prot_H-paniculata_contig28615.7798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28615 158..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28615.7798.1

>prot_H-paniculata_contig28615.7798.1 ID=prot_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLR
RALPFVVVGAQRFYERREV
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mRNA from alignment at H-paniculata_contig28615:158..388-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28615.7798.1 ID=mRNA_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig28615:158..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAGGACTCCCGATCGGGGTGATGCAGTGCTCGGACGCGGCGGGGGA GGCATCGGCGATAGCGAGTCAAGCGGAGGCGTACTGGACCAGCGGACGTG TGTCCGCTTCGGAGATGGCGGTGATGTACCGCACAAACGCCCAGAGTCGG TCGTTCGAAGAGGCGTTCTTGAGGAGAGCGTTACCCTTTGTGGTCGTCGG TGCTCAGCGATTTTACGAGCGGCGAGAGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig28615:158..388-

>mRNA_H-paniculata_contig28615.7798.1 ID=mRNA_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig28615:158..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTGCTCGGACGCGGCGGGGGAGGCATCGGCGATAGCGAGTCAAGC
GGAGGCGTACTGGACCAGCGGACGTGTGTCCGCTTCGGAGATGGCGGTGA
TGTACCGCACAAACGCCCAGAGTCGGTCGTTCGAAGAGGCGTTCTTGAGG
AGAGCGTTACCCTTTGTGGTCGTCGGTGCTCAGCGATTTTACGAGCGGCG
AGAGGTTATGCAGTGCTCGGACGCGGCGGGGGAGGCATCGGCGATAGCGA
GTCAAGCGGAGGCGTACTGGACCAGCGGACGTGTGTCCGCTTCGGAGATG
GCGGTGATGTACCGCACAAACGCCCAGAGTCGGTCGTTCGAAGAGGCGTT
CTTGAGGAGAGCGTTACCCTTTGTGGTCGTCGGTGCTCAGCGATTTTACG
AGCGGCGAGAGGTT
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