mRNA_H-paniculata_contig2861.7795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2861.7795.1
Unique NamemRNA_H-paniculata_contig2861.7795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: D7G6S7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6S7_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 9.440e-84
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 3 
Query:  282 MAAEAKGQEP-DVEMSESGKGPEP-LGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA 656
            MAAE KGQEP DV M ESGKGPEP +G VAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA
Sbjct:    1 MAAETKGQEPQDVVMGESGKGPEPGIGQVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA 127
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A7S2Y0P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0P1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.790e-72
Identity = 106/126 (84.13%), Postives = 111/126 (88.10%), Query Frame = 3 
Query:  282 MAAEAKGQEPDVEMSESGKGPEPLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            MAAE KG E DVEM ++ +         PRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLS+AFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIE+IPGYGSL V
Sbjct:    1 MAAETKG-ETDVEMLDAKESSN-----VPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSVAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIEKIPGYGSLGV 120
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A1E7FMU3_9STRA (Ring-box protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMU3_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.980e-68
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 3 
Query:  348 PLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA 656
            P+G  APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEW+FAKIERIPGYG LA
Sbjct:   24 PVGSAAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLA 126
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A7S3K273_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K273_9STRA)

HSP 1 Score: 217 bits (552), Expect = 4.010e-68
Identity = 101/124 (81.45%), Postives = 106/124 (85.48%), Query Frame = 3 
Query:  291 EAKGQEPDVEMSESG---KGPEPLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL 653
            EAK  E +VE +      + PE      P+FEIKKWNA+ MWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL
Sbjct:   34 EAKMSEMEVESTSPPPVPEKPEKEEIPPPKFEIKKWNAICMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL 157
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A1Z5J6S6_FISSO (RING-box protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6S6_FISSO)

HSP 1 Score: 214 bits (545), Expect = 1.320e-67
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 3 
Query:  312 DVEMSESGKGPEPLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            DV M ++ +      P APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEW+FAKIERIPGYG L +
Sbjct:    6 DVPMEDASEQQVLSKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 121
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A7S3PD50_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD50_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.780e-67
Identity = 99/123 (80.49%), Postives = 104/123 (84.55%), Query Frame = 3 
Query:  312 DVEMSESG-------KGPEPLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            DVEMS++          P    P APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEW+FAKIERIPGYG L +
Sbjct:    8 DVEMSDAPAEDSKEESKPAAKDPNAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 130
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: B7G7T1_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7T1_PHATC)

HSP 1 Score: 213 bits (541), Expect = 8.190e-67
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 3 
Query:  312 DVEMSESGKGPEPLGPV-------APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            DVEM E+ +G +    V       APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEW+FAKIERIPGYG L +
Sbjct:   12 DVEMEETVEGADSEEVVKPKASGSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGL 134
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A7S1UML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UML7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 9.400e-67
Identity = 111/172 (64.53%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:  165 SLLHQDAAIYLKPYYQEAAKLRREGTQPPIRKACLSV-GRMAAEAKGQEPDVEMSESGKGP------EPLGPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            S+ H   A+Y++   Q     RR G  PP     + V  +M+ E   +  DV M ++   P      +  GP APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEW+FAKIERIPGYG L +
Sbjct:    4 SVQHPRIALYIR-CEQPQRPSRRLGFLPPHGLPQIRVFSKMSTE---ETKDVAMKDAAAPPAKKPAAKGSGP-APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 170
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A7S1BRM9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRM9_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.180e-66
Identity = 103/140 (73.57%), Postives = 110/140 (78.57%), Query Frame = 3 
Query:  264 CLSVGRMAAEAKGQEPDVEMS------ESGKGPEPLGPVAP--RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            C  +   AA+A G   DV MS       S K  +      P  RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNKEWE+AKIE+IPG+GSL +
Sbjct:    9 CPDISPSAADADG---DVTMSGTKSAKSSSKKSDKASSSVPAKRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGACGHVFHLDCIQRWLKTRSVCPLCNKEWEYAKIEKIPGFGSLGI 145
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BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Match: A0A4D9CQ35_9STRA (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ35_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.410e-66
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 3 
Query:  354 GPVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLAV 659
            G  APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +L +
Sbjct:   39 GAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2861.7795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6S7_ECTSI9.440e-8494.49RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2Y0P1_9STRA1.790e-7284.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FMU3_9STRA1.980e-6892.23Ring-box protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A7S3K273_9STRA4.010e-6881.45Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Z5J6S6_FISSO1.320e-6782.76RING-box protein 1 n=2 Tax=Fistulifera solaris Tax... [more]
A0A7S3PD50_9STRA1.780e-6780.49Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G7T1_PHATC8.190e-6780.49Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A7S1UML7_9STRA9.400e-6764.53Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1BRM9_9STRA1.180e-6673.57Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A4D9CQ35_9STRA1.410e-6689.22RING-type domain-containing protein n=3 Tax=Monodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2861contigH-paniculata_contig2861:4322..7332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue1.4e-65
Seed eggNOG ortholog2880.D7G6S7
Preferred nameRBX1
KEGG koko:K03868
KEGG Pathwayko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0000715,GO:0001666,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010265,GO:0010389,GO:0010468,GO:0010498,GO:0010556,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010948,GO:0010972,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019788,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030162,GO:0030163,GO:0030178,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031334,GO:0031461,GO:0031462,GO:0031463,GO:0031464,GO:0031465,GO:0031466,GO:0031467,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033554,GO:0033683,GO:0034097,GO:0034450,GO:0034622,GO:0034641,GO:0035361,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042176,GO:0042221,GO:0042769,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043618,GO:0043620,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045116,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060090,GO:0060255,GO:0060828,GO:0061136,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070482,GO:0070498,GO:0070555,GO:0070647,GO:0070887,GO:0070911,GO:0071310,GO:0071345,GO:0071347,GO:0071453,GO:0071456,GO:0071704,GO:0071824,GO:0071840,GO:0080008,GO:0080090,GO:0090090,GO:0090304,GO:0090305,GO:0097602,GO:0140096,GO:0198738,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1905114,GO:1990234,GO:2000058,GO:2000060,GO:2000112,GO:2001141
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsCOG5194@1,KOG2930@2759
EC2.3.2.32
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Exons5
Model size810
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.1950595-UTR-H-paniculata_contig2861:4321..45771622929870.1950595-UTR-H-paniculata_contig2861:4321..4577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 4322..4577 +
1691481047.4625099-UTR-H-paniculata_contig2861:4321..45771691481047.4625099-UTR-H-paniculata_contig2861:4321..4577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 4322..4577 +
1622929870.210654-UTR-H-paniculata_contig2861:5376..54011622929870.210654-UTR-H-paniculata_contig2861:5376..5401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 5377..5401 +
1691481047.4740734-UTR-H-paniculata_contig2861:5376..54011691481047.4740734-UTR-H-paniculata_contig2861:5376..5401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 5377..5401 +
1622929870.269898-UTR-H-paniculata_contig2861:7184..73321622929870.269898-UTR-H-paniculata_contig2861:7184..7332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 7185..7332 +
1691481047.531573-UTR-H-paniculata_contig2861:7184..73321691481047.531573-UTR-H-paniculata_contig2861:7184..7332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 7185..7332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.2215965-CDS-H-paniculata_contig2861:5401..54791622929870.2215965-CDS-H-paniculata_contig2861:5401..5479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 5402..5479 +
1691481047.4832778-CDS-H-paniculata_contig2861:5401..54791691481047.4832778-CDS-H-paniculata_contig2861:5401..5479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 5402..5479 +
1622929870.2323577-CDS-H-paniculata_contig2861:5923..60431622929870.2323577-CDS-H-paniculata_contig2861:5923..6043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 5924..6043 +
1691481047.4922972-CDS-H-paniculata_contig2861:5923..60431691481047.4922972-CDS-H-paniculata_contig2861:5923..6043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 5924..6043 +
1622929870.2451973-CDS-H-paniculata_contig2861:6588..67141622929870.2451973-CDS-H-paniculata_contig2861:6588..6714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 6589..6714 +
1691481047.5032208-CDS-H-paniculata_contig2861:6588..67141691481047.5032208-CDS-H-paniculata_contig2861:6588..6714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 6589..6714 +
1622929870.259626-CDS-H-paniculata_contig2861:7127..71841622929870.259626-CDS-H-paniculata_contig2861:7127..7184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 7128..7184 +
1691481047.5207913-CDS-H-paniculata_contig2861:7127..71841691481047.5207913-CDS-H-paniculata_contig2861:7127..7184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 7128..7184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2861.7795.1prot_H-paniculata_contig2861.7795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2861 5402..7184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2861.7795.1

>prot_H-paniculata_contig2861.7795.1 ID=prot_H-paniculata_contig2861.7795.1|Name=mRNA_H-paniculata_contig2861.7795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MAAEAKGQEPDVEMSESGKGPEPLGPVAPRFEIKKWNAVAMWSWDICADT
CAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTR
SVCPLCNKEWEFAKIERIPGYGSLAV*
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mRNA from alignment at H-paniculata_contig2861:4322..7332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2861.7795.1 ID=mRNA_H-paniculata_contig2861.7795.1|Name=mRNA_H-paniculata_contig2861.7795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3011bp|location=Sequence derived from alignment at H-paniculata_contig2861:4322..7332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATATACTCCATCAACTGCATTGACTTGTGGTATTGACGTTCCTCCAT
CACACCCTTCAGACAGGAACGTCTAGACAAGAACCCAAAGCAGCAGCTCT
TTCTTCGGTATATGTTAAAGCTTCTCGAGAGGATATCGAGTCTCACTGAT
CGTGCCTCGGTCGATCCCTATTGCATCAGGACGCCGCGATATATTTGAAA
CCGTATTACCAAGAGGCAGCTAAGCTGCGGAGGGAAGGAACACAACCTCC
GATAAGGTGCGGCGGCTGCAACGCTGCGTGTGCTGCACAGCAATCCGGGC
TAAAATACCGTAGAACTTGGTGTATCGCCCCAAATTATTTCGAGACTTGA
CCCTTACTTTCAGTGCATTCTATTCGTCTGCCCCTTGGTTTTTGGTTGGC
TGGCGGGATGTAACTCAAGTGTATATCGACACCGACACCAGCAGACAGAG
ACAGATAGTGCGGTATAGTTAGTGCCCCACAGTAGTACACGGCGATAGAT
GGACTGCCAGCAGGGTATCTGTGTAGTCTTGTGTTTGGTGCTGTATAGAG
CGAAGCCGCTGACTGTCCTACCTGTTGGTTTGGCCATCACCAGCCAAGAT
GCGCCAGTGTTGACGAAATAGAAGTGGGCCAGAGTTCCTTTTTTTTTTTT
AACGCCCGGAAGGCTAAGGCAAAAACCTCTATCCCATGCTTCCATACCGA
AGTACGTCTACATTTCCTTTTACAGAGTAGGCACCACCCCAGTTCGGCTA
AACCAGGTAGACAGTGTGGGGGTTGCACCCACTAAAAGACCTCTGACTAG
ACTTTCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGCGTGGG
TCCGTGGCGAAAAATGGAGTTCCGACCTCGCGGCACAAAATCCTTCGTCT
GAGTATAGACTAGACGAGACACTCCACACAGACAGTCCAGTTGTCAGCTG
CCCTGTCTAAACGACGCCATAAAGTCATATGATCGTCAAGAATCGTTTTC
CGGACTCTGATGATGGATACTCGGCGCATTGAACCTGGGTGTGTTTCTTG
TGCAGGAAAGCTTGCCTCAGTGTTGGAAGGATGGCTGCGGAGGCCAAGGG
CCAGGAGCCTGATGTGGAAATGAGCGAGTCGGGCAAGGGACCAGAGCCAC
TAGGACCGGTGTGGTACCATATATAACAGGAGACGAGTTGGAGCCTACAT
AGATTACATTGTCGATACGCAATCATTAGACCATGTGAGATGCGGTCTCT
TATTACCAGCGTTTGCCATAGTAGGATCCAGTTTTTAAATCATCGTTACT
GAGTCCTCTTCAAAAATGGTCGGGCCTTGGGCTCATCGCCTACAGTACAG
ATTAGAGAGAGGTCAAGTCTTCCCCGGTGTGACTGGCCCTTTGTCACACA
GCCTCAAGGCTGTGACGAAATGTCTAATTTTTCTTCATGTCTGGTGCGGC
GCAGCTCGTACATAGAACAGGTTGTTTTTCCGCATGACAAGGACACACCG
AACGACGACTGATTGTCTATATTCACACCCAAACTCGTGTCCGATTCGCG
TACTGTTGTGCCTCACTTCCTTTGTAAATGCTTGTCTCTTTGTGGCCGTC
AGGTGGCTCCTCGATTCGAAATCAAGAAATGGAATGCGGTGGCAATGTGG
TCGTGGGACATATGCGCAGACACTTGCGCCATCTGCCGCAACAGCCTTAA
CGAGCCTAGCATTGAATACCAGGTATAGGTTTCAGGCCTTGCTAAATCTC
TTTTGGGTTCTGGCATCACTTGCAGGGCACTGCGGCGATCAAAAGTAACA
CGTTAAGGACTGTTGACAAGCATCTGTTTTGTTCTAAATGTTGTTTTCTT
GTGCTGACCGCAACAACTTCGTTTTAGACATGCGTATCACGAGGACCATG
AACCATGAAGGACGTTTCGCGAGCGGCTCGTTTGGGTCGTTACCAGCACG
CTACCGTAGCTCTATTTCCTTCAAGACCCTGCAGTATCTGGCTGCCTACC
GCGCCTTCTACGCTTACATAATTGTTAACTTGCTTGTTCACTAAGCATTT
TTGATGTTGACAAACCTAACATATTTGGTCTAGTGCTTTACGACGTGATG
CAGACTTTCCTGTCGGCGGAGCTCTCGTGCTTGCAGTTGGCTGCCGTGTC
GTGGAATGCCTTGTGTGGGTTTGCTGTCTGTTGGACAGCGCAGCTGAACA
TGCTCGTGCAGTTGGTCTTTCAGTTCCTTGTGCTTACTTCATGTTATTTT
AATTTAATACAATGCAGGCGAACCCGTCACCAAACAACGAGAACGGTCTT
TCTATCGCGTTCGGATGCTGTGGACACGTGTTCCACCTCGATTGTATTCA
GCGATGGCTCAAGACGCGTTCTGTATGTCCGCTCTGCAATAAGGTGAATG
TTCCTAGGCTGGCTACGTGAAACAAATAATCCTACCTCACAGGAGAGCAG
ATCCCTTCTGCTTAAGTGCATCGGCAGTAGGAAGATGTTATGGCGTGCAA
TTTTACCAACATACAAATAAACGATTGTGATGCTCGCGTTTACACACTGA
ACGCTGTTTCGTGTCGGTGACCCGACTGTACTGTAGCTGTGTTTGAATGC
CTGTCATGTTTGACTATACCTGTGCAGCTTTTTTTTCTTGTTTTCTGTCC
ACCCGGCCGGTGTCGCCAACCTCTTTGGCCAGTCAGCTGTTCATGTCACC
ACATTAATTACCCTAACACCAATCTACGTTGACATCAATTATGTATCACC
ATGAATACATCAACCGCGTTAGTTTGTGTATGATGCTTTGCTGTGCGTTC
GTCCAGGAATGGGAATTCGCGAAGATCGAGCGTATTCCGGGGTATGGAAG
CCTCGCTGTCTAGGGTGTATTGATTCCGATATGGAGAATCAAGCGTTATT
GTGCGCCCCGGTTGGAAAGGGGGCAACAACCGCTGACCAGTTAGGGGACG
AGTAGTTGGGAGTGGGGGCGAGCAACAAATGTCGGAGAGGTGGCCCTTGT
GGCACATCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2861:4322..7332+

>mRNA_H-paniculata_contig2861.7795.1 ID=mRNA_H-paniculata_contig2861.7795.1|Name=mRNA_H-paniculata_contig2861.7795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2861:4322..7332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCGGAGGCCAAGGGCCAGGAGCCTGATGTGGAAATGAGCGAGTC
GGGCAAGGGACCAGAGCCACTAGGACCGATGGCTGCGGAGGCCAAGGGCC
AGGAGCCTGATGTGGAAATGAGCGAGTCGGGCAAGGGACCAGAGCCACTA
GGACCGGTGGCTCCTCGATTCGAAATCAAGAAATGGAATGCGGTGGCAAT
GTGGTCGTGGGACATATGCGCAGACACTTGCGCCATCTGCCGCAACAGCC
TTAACGAGCCTAGCATTGAATACCAGGTGGCTCCTCGATTCGAAATCAAG
AAATGGAATGCGGTGGCAATGTGGTCGTGGGACATATGCGCAGACACTTG
CGCCATCTGCCGCAACAGCCTTAACGAGCCTAGCATTGAATACCAGGCGA
ACCCGTCACCAAACAACGAGAACGGTCTTTCTATCGCGTTCGGATGCTGT
GGACACGTGTTCCACCTCGATTGTATTCAGCGATGGCTCAAGACGCGTTC
TGTATGTCCGCTCTGCAATAAGGCGAACCCGTCACCAAACAACGAGAACG
GTCTTTCTATCGCGTTCGGATGCTGTGGACACGTGTTCCACCTCGATTGT
ATTCAGCGATGGCTCAAGACGCGTTCTGTATGTCCGCTCTGCAATAAGGA
ATGGGAATTCGCGAAGATCGAGCGTATTCCGGGGTATGGAAGCCTCGCTG
TCTAGGAATGGGAATTCGCGAAGATCGAGCGTATTCCGGGGTATGGAAGC
CTCGCTGTCTAG
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