mRNA_H-paniculata_contig2861.7794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2861.7794.1
Unique NamemRNA_H-paniculata_contig2861.7794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2861.7794.1 vs. uniprot
Match: D7FLT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.860e-13
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:  115 EMGDDANEEELMRRVDEVMNARMREKFPDAFKPKTKFQTNRAARSDDIWENGTVVRWMARVIAALLGMAMLYAFKEQ 345
            EMG+DA+E  +++RV+E+ +  +RE FPDA+KP    +  +A  SDD+WENGTVVR++ARV+A LL  A LYA+ ++
Sbjct:   63 EMGEDADELAMLKRVEEITDKLLRESFPDAYKP-APAKRPKAVDSDDVWENGTVVRYLARVMALLLAAAGLYAWNDK 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2861.7794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT0_ECTSI3.860e-1350.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2861contigH-paniculata_contig2861:397..3231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001380.1
Exons3
Model size1103
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2861.7794.1prot_H-paniculata_contig2861.7794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2861 445..2554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.1057615-UTR-H-paniculata_contig2861:396..4441622929870.1057615-UTR-H-paniculata_contig2861:396..444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 397..444 +
1691481047.4047415-UTR-H-paniculata_contig2861:396..4441691481047.4047415-UTR-H-paniculata_contig2861:396..444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 397..444 +
1622929870.152917-UTR-H-paniculata_contig2861:2554..32311622929870.152917-UTR-H-paniculata_contig2861:2554..3231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 2555..3231 +
1691481047.4519005-UTR-H-paniculata_contig2861:2554..32311691481047.4519005-UTR-H-paniculata_contig2861:2554..3231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2861 2555..3231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.1185708-CDS-H-paniculata_contig2861:444..5191622929870.1185708-CDS-H-paniculata_contig2861:444..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 445..519 +
1691481047.413402-CDS-H-paniculata_contig2861:444..5191691481047.413402-CDS-H-paniculata_contig2861:444..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 445..519 +
1622929870.1290205-CDS-H-paniculata_contig2861:1617..17311622929870.1290205-CDS-H-paniculata_contig2861:1617..1731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 1618..1731 +
1691481047.428322-CDS-H-paniculata_contig2861:1617..17311691481047.428322-CDS-H-paniculata_contig2861:1617..1731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 1618..1731 +
1622929870.1395302-CDS-H-paniculata_contig2861:2365..25541622929870.1395302-CDS-H-paniculata_contig2861:2365..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 2366..2554 +
1691481047.4379568-CDS-H-paniculata_contig2861:2365..25541691481047.4379568-CDS-H-paniculata_contig2861:2365..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2861 2366..2554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2861.7794.1

>prot_H-paniculata_contig2861.7794.1 ID=prot_H-paniculata_contig2861.7794.1|Name=mRNA_H-paniculata_contig2861.7794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MNLPTPQQQKMLEQRATIDVHNEMGDDANEEELMRRVDEVMNARMREKFP
DAFKPKTKFQTNRAARSDDIWENGTVVRWMARVIAALLGMAMLYAFKEQL
MGRETWDGQKIEVASKETKEGKKDM*
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mRNA from alignment at H-paniculata_contig2861:397..3231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2861.7794.1 ID=mRNA_H-paniculata_contig2861.7794.1|Name=mRNA_H-paniculata_contig2861.7794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2835bp|location=Sequence derived from alignment at H-paniculata_contig2861:397..3231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACGGGCAAGGAGGCCGTGGCAAGAAGTCAAAGGCGACAGCTGCCAT
GAACTTGCCCACGCCACAACAACAAAAAATGCTCGAACAACGTGCGACAA
TTGATGTCCACAACGAAATGGGGGTGAGATTGTTAATTTTCACGGATTTT
GTCATTGTTCACACACGCACTCTGACCAAGATGCTTCATGCTTGTGCCGT
GCCTCACACGGGACGTTGGCACGTATTCGACAACCTTTGTTAGTCTCCTC
TAGTCCCTGTCCTACATTATACCCCGATTTGATCTGATTTTTCTTGGTAA
ATGTACCCAACTTGGATCTGAGGTCAGCTGCATAATCTCGACAGCGGTAC
CATGGAGTTATTGTATAATTTTTGTGAAGCTACTAACTGTGGCACCTGGG
TTGAATCGTGAGTGCGACTTGGTGGGTAAATTTGTTGTTTTATATACATC
TGGCGTTAACTTGTAAGCCATGCCATCTTTACGCATAGTAGAAATATGGC
TGAGACACTGATACTCCCTTGTGAAGGTTGTAGCCCATGTCATGCCTGTT
GAAAGAGATGCAATAAGTCCTGGTGGTTGGTCATGATAAGACAAACATGT
ATATCATGTAAATCATGTAGTAGTATTATTTTGATCTACCAAGCAGCACA
CCCAAACATACCCACCCTGCCCTGGAATTAAGTATCGACATTGACTTGAG
TCCTGGGCATGTTTGTTTTCCTCGGGTGTCGGTGCTCTTCAGATGCTATG
TTGGTTTAGACATGGCTACTTTTTATTATTTCCCAGAATCTGCAGCAGAC
CGCCGATCGCATTAGACTAAAGCATATGTTGCATTCAGTGTTTCAGCATT
ATTCCTACAGCGGGTACCAAAATCTAGGAATTACTTGATCTTTCCCTTAC
AAGTACTACGGTGACGATTTTCAAGTACTGTGAAGTACCTCCAGTCCTCC
CTGACGATGAATCAACGTCAGGGGTTCTGTAAAAATGGCATATCGCGTAA
GATCCGACACCGATGCTGGTCATTGCTTTGGCTTTCCATTTCCGCAATCG
TATCACCGTGTCGAGTTATCGAGAGTTCTAATCTAGAAAACAACATCGAC
GTTTTTGTGTACTGTACAAACCGAAGGTATGGGCCTGATTTTCCACGAAG
GGATGATGTGTCAATCTGCAGGGTGTTGATATTTTGTCTTGTGTGTGATG
ACCCGTTGGTTATGTGTACAGGATGATGCCAATGAAGAAGAATTGATGCG
ACGGGTTGACGAGGTGATGAATGCGCGCATGCGGGAGAAATTTCCCGACG
CGTTCAAGCCCAAGACGAAATTCCAAACAAACAGAGTGAGTGCAGTACAA
CTACTGGAATTATTTTGTGTGTATCACTTTGTCATAATTTTGAAGAAAAC
GCAGGTGGCGAGTTGGCGTCTTCTCCTGTCGGATCTCTTCGTGGGAATGA
ACATAATTGTTCCACGTACTCAGTCTGTATTGTTCCTTGTCTCTGGAATG
GTAGTCATAGGACCGTAGATAGTGGCGTTTTGAACATTGGAAAAGAATTC
ATTTTGAGTGGGTTATGACAGGTGGTGCTCGTACCAAAAAGCTATGCTTC
TTGCTTGGTGTCGGTGACAGAGTTCTATTTCGGGACAGCAAGAGCCACAG
GCAGTTAGTCGATCTATCAAAAAAATTGAAAATTGCGACATGGCACTTAG
CACGCAGAATCTAGTGACGGGCGGCCGACCATTGCGATCATGAAATAAAT
ATGATTGCATTGGCAGCGTACATTACGCTGAGCGGTGCTGTGTCTCACAT
TTTCAGGGGTGGATATATACACGCTGTTCTTATTCAGCCTCACCAGGTAT
CCCCTTGTTTCCACATCCTGACACATGTGCACCATTTCTCACAACATCCG
CGCTCAGAATCAGACCCCTGGTAGGCGCGAAACCCTCACGCACCCTCATT
AACATGATCAAATCGACAGGCTGCGAGGAGTGACGACATTTGGGAAAATG
GAACAGTGGTCCGTTGGATGGCCCGGGTTATCGCGGCCCTGCTAGGTATG
GCGATGCTGTATGCTTTCAAGGAGCAACTGATGGGGCGGGAAACATGGGA
CGGGCAAAAGATTGAAGTCGCTAGCAAGGAGACAAAAGAGGGAAAGAAGG
ATATGTAGAGGCATAGATCGCACCATCCATCCTCCAGTGGAAGACTGGGT
ACAATCTATTGGGTTCTCCCAGACATGCGCGCCGCGCATATATGTGTTGA
TTGCGGGTGGGTAATACAGGCCATCTCGGGGGTGGGGGGGAAAGTGTCTT
TGCGGTAGATTTTGGCGCTAGGTAGGTGGACCGCTCCCACATTATTGTAG
AGAGTTATAACCTTGCTTATAGAGACGTTTTGCCCTGCTTATAAAGATAT
ATTGATTTGCGTCATTTGTGAGAGCACGAGTCTTTTGCGCTAGCTTTAAC
AATATTTTTTCGTGCTTTTTGCCCGCTTCTAGCTCCGGTGGCAGGGAAAA
AGATCAACGTTTGCATGTGTTTTTAGATAAATATGCTCACTTAGCAAATT
ATATATTAGGGGCGAGCGGCACACTGTACTATGCTGGTTGTTTTGACACT
GCAGCTGCAGGCGTGATTGGTGGGTTTGGGTGGAGTTGTGTTCTGTTTGC
AGAACTGCAAAGTGGGCGGCTACTGTATCCTCTCAGGTGATGTATCTATG
TGTTTTCAATCAAACAGTATGTGCCAGCAACGTTAGTATTCGGCCTTACA
TGTCGCGCACGCGACCTACGCTTTCATTACGCTCATTCGTTCAGATTAAT
GGTGGAGCAGATCCATAAAACGCACCCATACCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2861:397..3231+

>mRNA_H-paniculata_contig2861.7794.1 ID=mRNA_H-paniculata_contig2861.7794.1|Name=mRNA_H-paniculata_contig2861.7794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2861:397..3231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTTGCCCACGCCACAACAACAAAAAATGCTCGAACAACGTGCGAC
AATTGATGTCCACAACGAAATGGGGATGAACTTGCCCACGCCACAACAAC
AAAAAATGCTCGAACAACGTGCGACAATTGATGTCCACAACGAAATGGGG
GATGATGCCAATGAAGAAGAATTGATGCGACGGGTTGACGAGGTGATGAA
TGCGCGCATGCGGGAGAAATTTCCCGACGCGTTCAAGCCCAAGACGAAAT
TCCAAACAAACAGAGATGATGCCAATGAAGAAGAATTGATGCGACGGGTT
GACGAGGTGATGAATGCGCGCATGCGGGAGAAATTTCCCGACGCGTTCAA
GCCCAAGACGAAATTCCAAACAAACAGAGCTGCGAGGAGTGACGACATTT
GGGAAAATGGAACAGTGGTCCGTTGGATGGCCCGGGTTATCGCGGCCCTG
CTAGGTATGGCGATGCTGTATGCTTTCAAGGAGCAACTGATGGGGCGGGA
AACATGGGACGGGCAAAAGATTGAAGTCGCTAGCAAGGAGACAAAAGAGG
GAAAGAAGGATATGTAGGCTGCGAGGAGTGACGACATTTGGGAAAATGGA
ACAGTGGTCCGTTGGATGGCCCGGGTTATCGCGGCCCTGCTAGGTATGGC
GATGCTGTATGCTTTCAAGGAGCAACTGATGGGGCGGGAAACATGGGACG
GGCAAAAGATTGAAGTCGCTAGCAAGGAGACAAAAGAGGGAAAGAAGGAT
ATGTAG
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