mRNA_H-paniculata_contig28607.7793.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5JRT0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT0_9PHAE) HSP 1 Score: 258 bits (658), Expect = 3.240e-75 Identity = 144/301 (47.84%), Postives = 188/301 (62.46%), Query Frame = 1
Query: 1 KAFSSAFVLPGHYYRELLVEVAAPLLIAFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMA-AMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
KAFS+ ++ G +Y EL+ + APL +A I R T R + LLAL+Y VL+P N ALR SCE FDDGR MLRADYSI+C+ AEH +Y+ LA+ A+ YP G L LY +L ++R LLYP E+H RPK D AIA EAKR N L L+PF LLHDAYEPRAWWYE+F+T RRILLA ++ AT T+ QLWIA G TV+ L MNV+ SPFV+ M D LYSSAQ+ VL AL+ E G D + + L + ++G +++A + ++ A G Q++
Sbjct: 563 KAFSATCLVHGTFYGELVFKTIAPLGVAVVIMGVRSFLRSSWITDGRTWRGRSMKCNECLLALTYLVLTPAINAALRTLSCESFDDGRTMLRADYSIDCNDAEHPKYRALAVIMAVAYPTGILALYSGVLWKHRHLLYPSEIHGRPKGDDAIAEEAKRANALALQPFALLHDAYEPRAWWYEIFETCRRILLASLVFFATRTSMQLWIAMGFTVLSLVMNVVFSPFVETMHDSLYSSAQISAFVVLALALMAEAEEDRGDDETPRLLTSVMTVVMAGYVVAALGALMMQRGARTPDGIQLD 863
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 107 bits (267), Expect = 3.250e-22 Identity = 84/290 (28.97%), Postives = 144/290 (49.66%), Query Frame = 1
Query: 4 AFSSAFVLPGHYYRELLVEVAAPLL-IAFSICTGHRVNRWKSPRTR-DTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAM-AAMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMC-LATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITI 861
A S + + ++ LLV +P+ + F CT R W R + DT + +L L++FV S V+++ R+F+CE D + LR+DY I CD+++H +Q+ A+ +VY G LY +L R+R LL K+D +KRR+ ++ L + Y A++YE+ + RR+LLAGV+ + TAAQ+ + I + ++ ++P+ D + VV + +F LL++ V D H S + + L AV +M+ A + T+
Sbjct: 1325 ALSVSCTIDMDFHDRLLVSTISPIAALLFLACTYFRA--WSLYRRKPDTLGAVQHKHASMVLLLTFFVYSSVSSILFRSFACEELADRKIYLRSDYRIECDSSKHKGFQVYAVFMILVYTVGIPALYAGLLFRDRDLL---------KQD-----TSKRRDPPRVTSIADLWEPYNRWAFYYEVIECGRRVLLAGVVVFIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLV-AVHALMVMAIVVETV 1597
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.410e-21 Identity = 79/276 (28.62%), Postives = 128/276 (46.38%), Query Frame = 1
Query: 148 RKTADAEWAHLLALSYFVLSPVTNVALRAFSC-ELFDDGRRMLRADYSINCDAAEHSRYQMLA-MAAMVYPAGTLVLYWAILARNRQLLYPP--------------------EVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATV---TAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
R+ D L +++F+ S V+ V + FSC EL D G+ LRADY I+CD+ H +++ A + +VYP G V + +L R R ++ PP E + RP E +R + ++ L AY P A++YE+ + FRR+LL G CL + +A Q +A + V+ +A+ VSP+ D D Y+ + +F L+V + D S LG+ L G+++ A A + R L R + +
Sbjct: 25 RRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDVGKSYLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPD------QRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTG--CLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVRVDLADEETQSQLVLGVLLILLTIGLVVVAVAECLWEARRLSRGNREAD 292
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.640e-18 Identity = 74/259 (28.57%), Postives = 120/259 (46.33%), Query Frame = 1
Query: 148 RKTADAEWAHLLALSYFVLSPVTNVALRAFSC-ELFDDGRRMLRADYSINCDAAEHSRYQMLA-MAAMVYPAGTLVLYWAILARNRQLLYPP--------------------EVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATV---TAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFA 849
R+ D L +++F+ S V+ V + FSC EL D + LRADY+I+CD+ H +++ A +VYP G V + +L R R ++ PP E + RP E +R + ++ L AY P A++YE+ + FRR+LL G CL + +A Q +A + V+ +A+ VSP+ D D Y+ + +F L+V + D S L + L G+++ A A
Sbjct: 175 RRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDLDKSYLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPD------QRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTG--CLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVREDLADEETQSQLVLSVLLIFLTIGLVVVAVA 425
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.670e-18 Identity = 79/289 (27.34%), Postives = 138/289 (47.75%), Query Frame = 1
Query: 4 AFSSAFVLPGHYYRELLVEVAAPLL-IAFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAM-AAMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAG-VMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITI 861
A S + ++ LLV +P+ + F CT R R R D + + +L L++FV S V+ + R F+CE D + LR+DY I CD+++H +Q+ A+ ++Y G LY +L R+R +L KED + +R + ++ L + Y A++YE+ D RR+LLAG ++ + TAAQ+ + + ++ ++P+ D + + + +F ALL++ V D H S + + L AV +MI A + T+
Sbjct: 1080 ALSVCCTINMDFHDRLLVSTISPIAALLFLACTYFRA-RCLYRRKPDKLQTVPHKHASMVLLLTFFVYSSVSVILFRPFACEELADRKIYLRSDYRIECDSSKHKSFQVYAVFMILLYTVGIPALYAGLLFRDRDVL---------KEDTS----KRRDDPPRVTSIADLWEPYNRWAFYYEVIDCGRRVLLAGFIVFIYPNTAAQIAVTLIFAFAFVVISEALNPYKSGWDRWINRMGHIGVFSSMFLALLLKVNVSDEHAASQRVFEVVLV-AVHALMIMAIVVETV 1353
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S1GB66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB66_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.930e-17 Identity = 67/227 (29.52%), Postives = 110/227 (48.46%), Query Frame = 1
Query: 43 RELLVEVAAPLLIAF-SICTGHRVNRWKSPRTRDTCR--KTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMAAMV-YPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNV-LQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCL---ATVTAAQLWIATGITVVCLAM--NVIVSPFVDKMDD 693
R L E++ ++++F ++ G + D R K DA LL L++ + +P++ F C F+DG R+LRADYSI+CDA S + + + +V + G ++ +L R ++ P P++ + A RRN +L F L A+E R WW+E + R++LL G + +VT +A GI V LA+ VSP+ + DD
Sbjct: 46 RNLYTELSGTVVLSFLAVAVGAAAVAVATRLVGDEARRAKIKDAGVTALLLLAFLIYAPISQKIFAVFPCVTFEDGSRVLRADYSIDCDADNRSAWVLFGVVCVVAFSVGIPACFFGLLYVRRDVVNPA-----PRKGETPQQTAMRRNADPRLTRFEFLFAAFECRYWWFECVELLRKVLLTGFIVFWEPGSVTQ----VAAGIFVCILAVVGTAFVSPYYNVSDD 263
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S2BXC9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXC9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.200e-17 Identity = 79/298 (26.51%), Postives = 133/298 (44.63%), Query Frame = 1
Query: 61 VAAPLLI-AFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCE-------LFDDG-----RRMLRADYSINCDAAEHSRYQMLAMAAMV--YPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLA---TVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
VAA +LI AF++ R +R K + + L + Y V + AF+C LF+D L AD +I+C++ + Y AMV YP G +W +L NR+ LYP V + +E+ E + L+ R L+ AYEPR +W+E+F+ FRR+LL+ + + + Q+ +A +++V + PF D DD++ Q ++ ALL++ D + L +A V ++ FA ++ R+ ++ QVE
Sbjct: 44 VAAIMLIKAFALAMYVR-DRCKGIPIEEAATSVRNGTTNLALLILYLVFPSCATIVFSAFTCTSFELPDTLFEDTGFEPTTSYLTADLTISCESPYYEDYIQPYAIAMVLLYPVGVPFFFWVLLYTNRRQLYPDVVRGKTEEEIHDLPECQDALALRPRSIRFLYYAYEPRCYWFEIFECFRRLLLSSFLPVIGGFLGSTVQIAVAVCVSLVAIKTYTYYMPFDDVTDDYIAEITQWQFFAIIQCALLMQVAPASQEDTIGL-VFLAIALVVVPLVFIMFAQDLLQLRSELKKAAQVE 339
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D7G5V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V5_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.610e-16 Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 514 AYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQV 717
+YEPRAWWYE+F+T RRILL ++ AT T+ QLWIA G TV+ L MNV+ SPFV+ + D LYSSAQ+
Sbjct: 300 SYEPRAWWYEIFETCRRILLTSLVFFATRTSMQLWIAMGFTVLSLVMNVVFSPFVEIIHDSLYSSAQI 367
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: F0Y4G7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G7_AURAN) HSP 1 Score: 83.2 bits (204), Expect = 5.650e-14 Identity = 67/301 (22.26%), Postives = 133/301 (44.19%), Query Frame = 1
Query: 37 YYRELLVEVAAPLLIAFSICT--GHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRR----------MLRADYSINCDAAEHSRYQMLAMAAM-VYPAGTLVLYWAILARNRQLLYP-----------PEVHRRPKEDKAIALEAKRRNVL-------QLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIV--SPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMIS 840
++ +++ P ++A I G R P R + +A LL LS+ VL ++V + F C ++ G +L AD +I C+ + +++ + + +YP GT + YWA+L R ++ P ++ + +ED + ++ + + V+ ++ L + YEPR WW+ +++ RR++L G + + A +A G+ V ++ V V +PF+D DD + Q + V F AL++ + D G A + G++++
Sbjct: 2401 FFNSMVMTTTLPFIVAALIVAYVGLRFLCVTDPDKRKHLKNSASYA---LLLLSFCVLPGCSSVCFQYFGCSEYEMGATYNGKARAMLSVLNADPNIRCNEPRYDSWRLYVLLMIFIYPIGTPLGYWALLRSKRHMIDPLLEDDGNQVDEDDLFAKAREDFELVMQQEHKLVIRHVEYADEIAVCAFLIEEYEPRCWWFSVYEVCRRLILTGGLTIFKAGGAT-QVAIGMLVAMISYRVYVGYAPFIDDDDDAISEVCQTQLVIVFFGALMLTVQNMVPEDEQES----GFAQNLFGIVLT 2693
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S0E399_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E399_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 6.600e-12 Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 1
Query: 211 VTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMAAM-VYPAGTLVLYWAILARNRQLL---YPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGI--TVVCLAMNVIVSPFVDKMDDH 696
V++ A +AF CE FDDG R LRADYS++C+ AEH R LA A+ +YP G +L +L R+ + +P ++ R LL Y P +W+E + +++ L GV C+ + + + TG ++V L I PF + D
Sbjct: 2 VSSRAFQAFDCEGFDDGTRFLRADYSLDCNEAEHGRVVSLAWVAIALYPVGIPLLNLTLLLTARKAILTEHPTDLS---------------------RSLTLLTSDYAPSMYWWEFVEICKKLFLVGV-CVLIRPGSTVQLITGFVFSLVVLLFTSIARPFQRRGHDE 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28607.7793.1 >prot_H-paniculata_contig28607.7793.1 ID=prot_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp KAFSSAFVLPGHYYRELLVEVAAPLLIAFSICTGHRVNRWKSPRTRDTCRback to top mRNA from alignment at H-paniculata_contig28607:816..2913+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28607.7793.1 ID=mRNA_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2098bp|location=Sequence derived from alignment at H-paniculata_contig28607:816..2913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28607:816..2913+ >mRNA_H-paniculata_contig28607.7793.1 ID=mRNA_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig28607:816..2913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |