mRNA_H-paniculata_contig28607.7793.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28607.7793.1
Unique NamemRNA_H-paniculata_contig28607.7793.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5JRT0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT0_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 3.240e-75
Identity = 144/301 (47.84%), Postives = 188/301 (62.46%), Query Frame = 1
Query:    1 KAFSSAFVLPGHYYRELLVEVAAPLLIAFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMA-AMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
            KAFS+  ++ G +Y EL+ +  APL +A  I       R        T R  +      LLAL+Y VL+P  N ALR  SCE FDDGR MLRADYSI+C+ AEH +Y+ LA+  A+ YP G L LY  +L ++R LLYP E+H RPK D AIA EAKR N L L+PF LLHDAYEPRAWWYE+F+T RRILLA ++  AT T+ QLWIA G TV+ L MNV+ SPFV+ M D LYSSAQ+    VL  AL+ E     G D + + L   +   ++G +++A   + ++  A    G Q++
Sbjct:  563 KAFSATCLVHGTFYGELVFKTIAPLGVAVVIMGVRSFLRSSWITDGRTWRGRSMKCNECLLALTYLVLTPAINAALRTLSCESFDDGRTMLRADYSIDCNDAEHPKYRALAVIMAVAYPTGILALYSGVLWKHRHLLYPSEIHGRPKGDDAIAEEAKRANALALQPFALLHDAYEPRAWWYEIFETCRRILLASLVFFATRTSMQLWIAMGFTVLSLVMNVVFSPFVETMHDSLYSSAQISAFVVLALALMAEAEEDRGDDETPRLLTSVMTVVMAGYVVAALGALMMQRGARTPDGIQLD 863          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.250e-22
Identity = 84/290 (28.97%), Postives = 144/290 (49.66%), Query Frame = 1
Query:    4 AFSSAFVLPGHYYRELLVEVAAPLL-IAFSICTGHRVNRWKSPRTR-DTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAM-AAMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMC-LATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITI 861
            A S +  +   ++  LLV   +P+  + F  CT  R   W   R + DT         + +L L++FV S V+++  R+F+CE   D +  LR+DY I CD+++H  +Q+ A+   +VY  G   LY  +L R+R LL         K+D      +KRR+  ++     L + Y   A++YE+ +  RR+LLAGV+  +   TAAQ+ +   I    + ++  ++P+    D  +     VV  + +F  LL++  V D H  S +   + L  AV  +M+ A  + T+
Sbjct: 1325 ALSVSCTIDMDFHDRLLVSTISPIAALLFLACTYFRA--WSLYRRKPDTLGAVQHKHASMVLLLTFFVYSSVSSILFRSFACEELADRKIYLRSDYRIECDSSKHKGFQVYAVFMILVYTVGIPALYAGLLFRDRDLL---------KQD-----TSKRRDPPRVTSIADLWEPYNRWAFYYEVIECGRRVLLAGVVVFIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLV-AVHALMVMAIVVETV 1597          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.410e-21
Identity = 79/276 (28.62%), Postives = 128/276 (46.38%), Query Frame = 1
Query:  148 RKTADAEWAHLLALSYFVLSPVTNVALRAFSC-ELFDDGRRMLRADYSINCDAAEHSRYQMLA-MAAMVYPAGTLVLYWAILARNRQLLYPP--------------------EVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATV---TAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
            R+  D      L +++F+ S V+ V  + FSC EL D G+  LRADY I+CD+  H  +++ A +  +VYP G  V +  +L R R ++ PP                    E + RP E        +R +  ++     L  AY P A++YE+ + FRR+LL G  CL  +   +A Q  +A  + V+ +A+   VSP+ D  D   Y+   +     +F  L+V   + D    S   LG+ L     G+++ A A    + R L R   + +
Sbjct:   25 RRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDVGKSYLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPD------QRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTG--CLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVRVDLADEETQSQLVLGVLLILLTIGLVVVAVAECLWEARRLSRGNREAD 292          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.640e-18
Identity = 74/259 (28.57%), Postives = 120/259 (46.33%), Query Frame = 1
Query:  148 RKTADAEWAHLLALSYFVLSPVTNVALRAFSC-ELFDDGRRMLRADYSINCDAAEHSRYQMLA-MAAMVYPAGTLVLYWAILARNRQLLYPP--------------------EVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATV---TAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFA 849
            R+  D      L +++F+ S V+ V  + FSC EL D  +  LRADY+I+CD+  H  +++ A    +VYP G  V +  +L R R ++ PP                    E + RP E        +R +  ++     L  AY P A++YE+ + FRR+LL G  CL  +   +A Q  +A  + V+ +A+   VSP+ D  D   Y+   +     +F  L+V   + D    S   L + L     G+++ A A
Sbjct:  175 RRVQDKYTTVALTMAFFLYSTVSTVIFQTFSCDELEDLDKSYLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPD------QRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTG--CLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVREDLADEETQSQLVLSVLLIFLTIGLVVVAVA 425          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.670e-18
Identity = 79/289 (27.34%), Postives = 138/289 (47.75%), Query Frame = 1
Query:    4 AFSSAFVLPGHYYRELLVEVAAPLL-IAFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAM-AAMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAG-VMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITI 861
            A S    +   ++  LLV   +P+  + F  CT  R  R    R  D  +       + +L L++FV S V+ +  R F+CE   D +  LR+DY I CD+++H  +Q+ A+   ++Y  G   LY  +L R+R +L         KED +     +R +  ++     L + Y   A++YE+ D  RR+LLAG ++ +   TAAQ+ +        + ++  ++P+    D  +     +   + +F ALL++  V D H  S +   + L  AV  +MI A  + T+
Sbjct: 1080 ALSVCCTINMDFHDRLLVSTISPIAALLFLACTYFRA-RCLYRRKPDKLQTVPHKHASMVLLLTFFVYSSVSVILFRPFACEELADRKIYLRSDYRIECDSSKHKSFQVYAVFMILLYTVGIPALYAGLLFRDRDVL---------KEDTS----KRRDDPPRVTSIADLWEPYNRWAFYYEVIDCGRRVLLAGFIVFIYPNTAAQIAVTLIFAFAFVVISEALNPYKSGWDRWINRMGHIGVFSSMFLALLLKVNVSDEHAASQRVFEVVLV-AVHALMIMAIVVETV 1353          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S1GB66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GB66_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.930e-17
Identity = 67/227 (29.52%), Postives = 110/227 (48.46%), Query Frame = 1
Query:   43 RELLVEVAAPLLIAF-SICTGHRVNRWKSPRTRDTCR--KTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMAAMV-YPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNV-LQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCL---ATVTAAQLWIATGITVVCLAM--NVIVSPFVDKMDD 693
            R L  E++  ++++F ++  G       +    D  R  K  DA    LL L++ + +P++      F C  F+DG R+LRADYSI+CDA   S + +  +  +V +  G    ++ +L   R ++ P      P++ +     A RRN   +L  F  L  A+E R WW+E  +  R++LL G +      +VT     +A GI V  LA+     VSP+ +  DD
Sbjct:   46 RNLYTELSGTVVLSFLAVAVGAAAVAVATRLVGDEARRAKIKDAGVTALLLLAFLIYAPISQKIFAVFPCVTFEDGSRVLRADYSIDCDADNRSAWVLFGVVCVVAFSVGIPACFFGLLYVRRDVVNPA-----PRKGETPQQTAMRRNADPRLTRFEFLFAAFECRYWWFECVELLRKVLLTGFIVFWEPGSVTQ----VAAGIFVCILAVVGTAFVSPYYNVSDD 263          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S2BXC9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXC9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.200e-17
Identity = 79/298 (26.51%), Postives = 133/298 (44.63%), Query Frame = 1
Query:   61 VAAPLLI-AFSICTGHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCE-------LFDDG-----RRMLRADYSINCDAAEHSRYQMLAMAAMV--YPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLA---TVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE 900
            VAA +LI AF++    R +R K     +      +      L + Y V      +   AF+C        LF+D         L AD +I+C++  +  Y      AMV  YP G    +W +L  NR+ LYP  V  + +E+     E +    L+ R    L+ AYEPR +W+E+F+ FRR+LL+  + +      +  Q+ +A  +++V +       PF D  DD++    Q     ++  ALL++       D     + L +A  V  ++   FA   ++ R+  ++  QVE
Sbjct:   44 VAAIMLIKAFALAMYVR-DRCKGIPIEEAATSVRNGTTNLALLILYLVFPSCATIVFSAFTCTSFELPDTLFEDTGFEPTTSYLTADLTISCESPYYEDYIQPYAIAMVLLYPVGVPFFFWVLLYTNRRQLYPDVVRGKTEEEIHDLPECQDALALRPRSIRFLYYAYEPRCYWFEIFECFRRLLLSSFLPVIGGFLGSTVQIAVAVCVSLVAIKTYTYYMPFDDVTDDYIAEITQWQFFAIIQCALLMQVAPASQEDTIGL-VFLAIALVVVPLVFIMFAQDLLQLRSELKKAAQVE 339          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: D7G5V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.610e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:  514 AYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQV 717
            +YEPRAWWYE+F+T RRILL  ++  AT T+ QLWIA G TV+ L MNV+ SPFV+ + D LYSSAQ+
Sbjct:  300 SYEPRAWWYEIFETCRRILLTSLVFFATRTSMQLWIAMGFTVLSLVMNVVFSPFVEIIHDSLYSSAQI 367          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: F0Y4G7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G7_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 5.650e-14
Identity = 67/301 (22.26%), Postives = 133/301 (44.19%), Query Frame = 1
Query:   37 YYRELLVEVAAPLLIAFSICT--GHRVNRWKSPRTRDTCRKTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRR----------MLRADYSINCDAAEHSRYQMLAMAAM-VYPAGTLVLYWAILARNRQLLYP-----------PEVHRRPKEDKAIALEAKRRNVL-------QLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGITVVCLAMNVIV--SPFVDKMDDHLYSSAQVVTLTVLFSALLVETGVIDGHDNSAQWLGLGLATAVSGVMIS 840
            ++  +++    P ++A  I    G R      P  R   + +A      LL LS+ VL   ++V  + F C  ++ G            +L AD +I C+   +  +++  +  + +YP GT + YWA+L   R ++ P            ++  + +ED  + ++ + + V+       ++     L + YEPR WW+ +++  RR++L G + +     A   +A G+ V  ++  V V  +PF+D  DD +    Q   + V F AL++    +   D        G A  + G++++
Sbjct: 2401 FFNSMVMTTTLPFIVAALIVAYVGLRFLCVTDPDKRKHLKNSASYA---LLLLSFCVLPGCSSVCFQYFGCSEYEMGATYNGKARAMLSVLNADPNIRCNEPRYDSWRLYVLLMIFIYPIGTPLGYWALLRSKRHMIDPLLEDDGNQVDEDDLFAKAREDFELVMQQEHKLVIRHVEYADEIAVCAFLIEEYEPRCWWFSVYEVCRRLILTGGLTIFKAGGAT-QVAIGMLVAMISYRVYVGYAPFIDDDDDAISEVCQTQLVIVFFGALMLTVQNMVPEDEQES----GFAQNLFGIVLT 2693          
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Match: A0A7S0E399_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E399_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 6.600e-12
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  211 VTNVALRAFSCELFDDGRRMLRADYSINCDAAEHSRYQMLAMAAM-VYPAGTLVLYWAILARNRQLL---YPPEVHRRPKEDKAIALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATVTAAQLWIATGI--TVVCLAMNVIVSPFVDKMDDH 696
            V++ A +AF CE FDDG R LRADYS++C+ AEH R   LA  A+ +YP G  +L   +L   R+ +   +P ++                      R   LL   Y P  +W+E  +  +++ L GV C+     + + + TG   ++V L    I  PF  +  D 
Sbjct:    2 VSSRAFQAFDCEGFDDGTRFLRADYSLDCNEAEHGRVVSLAWVAIALYPVGIPLLNLTLLLTARKAILTEHPTDLS---------------------RSLTLLTSDYAPSMYWWEFVEICKKLFLVGV-CVLIRPGSTVQLITGFVFSLVVLLFTSIARPFQRRGHDE 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28607.7793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JRT0_9PHAE3.240e-7547.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTI5_ECTSI3.250e-2228.97Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LRF6_ECTSI2.410e-2128.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU27_9PHAE1.640e-1828.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1P8_9PHAE2.670e-1827.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1GB66_9STRA1.930e-1729.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2BXC9_9STRA2.200e-1726.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G5V5_ECTSI1.610e-1661.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y4G7_AURAN5.650e-1422.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0E399_9EUKA6.600e-1230.36Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28607contigH-paniculata_contig28607:816..2913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue3e-21
Seed eggNOG ortholog2880.D7FTT9
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size903
Cds size903
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28607.7793.1prot_H-paniculata_contig28607.7793.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28607 816..2913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.0101423-CDS-H-paniculata_contig28607:815..10611622929870.0101423-CDS-H-paniculata_contig28607:815..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 816..1061 +
1691481047.3530822-CDS-H-paniculata_contig28607:815..10611691481047.3530822-CDS-H-paniculata_contig28607:815..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 816..1061 +
1622929870.0261996-CDS-H-paniculata_contig28607:1516..17871622929870.0261996-CDS-H-paniculata_contig28607:1516..1787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 1517..1787 +
1691481047.362366-CDS-H-paniculata_contig28607:1516..17871691481047.362366-CDS-H-paniculata_contig28607:1516..1787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 1517..1787 +
1622929870.0438495-CDS-H-paniculata_contig28607:2048..21701622929870.0438495-CDS-H-paniculata_contig28607:2048..2170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2049..2170 +
1691481047.3727355-CDS-H-paniculata_contig28607:2048..21701691481047.3727355-CDS-H-paniculata_contig28607:2048..2170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2049..2170 +
1622929870.055914-CDS-H-paniculata_contig28607:2381..24621622929870.055914-CDS-H-paniculata_contig28607:2381..2462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2382..2462 +
1691481047.383117-CDS-H-paniculata_contig28607:2381..24621691481047.383117-CDS-H-paniculata_contig28607:2381..2462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2382..2462 +
1622929870.0685139-CDS-H-paniculata_contig28607:2730..29131622929870.0685139-CDS-H-paniculata_contig28607:2730..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2731..2913 +
1691481047.39296-CDS-H-paniculata_contig28607:2730..29131691481047.39296-CDS-H-paniculata_contig28607:2730..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28607 2731..2913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28607.7793.1

>prot_H-paniculata_contig28607.7793.1 ID=prot_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
KAFSSAFVLPGHYYRELLVEVAAPLLIAFSICTGHRVNRWKSPRTRDTCR
KTADAEWAHLLALSYFVLSPVTNVALRAFSCELFDDGRRMLRADYSINCD
AAEHSRYQMLAMAAMVYPAGTLVLYWAILARNRQLLYPPEVHRRPKEDKA
IALEAKRRNVLQLRPFVLLHDAYEPRAWWYELFDTFRRILLAGVMCLATV
TAAQLWIATGITVVCLAMNVIVSPFVDKMDDHLYSSAQVVTLTVLFSALL
VETGVIDGHDNSAQWLGLGLATAVSGVMISAFAMITIKWRALRRQGTQVE
*
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mRNA from alignment at H-paniculata_contig28607:816..2913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28607.7793.1 ID=mRNA_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2098bp|location=Sequence derived from alignment at H-paniculata_contig28607:816..2913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCATTTTCCTCAGCCTTCGTCTTGCCGGGCCACTACTATCGCGAACT CTTGGTCGAAGTAGCTGCGCCTCTTCTGATTGCTTTTTCAATCTGCACCG GGCATCGTGTGAACCGCTGGAAGTCCCCAAGGACCAGGGACACATGTAGG AAAACGGCAGATGCGGAATGGGCGCATCTCTTGGCACTCTCGTATTTCGT GCTCAGTCCTGTTACAAACGTGGCACTCCGAGCTTTCTCTTGTGAGGTAA GCACCGTAGGCACGATATTGCAAGCAAACAAGAACTCCCGAACTGGAAAG CAACATGAAAATATTTTGCGATTGCTTGAGGTCCCTACACTCCAGTACTC GACATATGATAGCCCAAAGCTAGAAATATCCAAATTTCTTTCATATTTGC AATCCCCATCGACCAGTAGAATACAACTCTTTCAAAAGTATATACATGGT ACTCTCTTACTCTTTTTTACGTAAGGATTGCGGGATTAGTCAGAGTTGCA TATATTGATTAAACGTCGCGGTTCCTCCTCGGGGAACCTATATGCTGTCG TATCTTTAACTAGCAGCATTCATATAATAGTTTATGTTGTGCGAACGCAG CACCAGCAAGTCTGTTCATGGTCTTGAGCAGGTGGCTGACTCTCGGACTA GGAGATAACAACCAATCCCGCCTCGTTTTCAAACTTGTTTCGCTTTTCCA GCTATTTGATGACGGTCGCAGAATGTTACGAGCGGACTACTCAATAAACT GCGACGCTGCAGAACACAGCAGATACCAAATGCTGGCGATGGCGGCTATG GTCTACCCTGCCGGTACCCTCGTACTCTACTGGGCGATACTCGCGAGGAA TCGACAGCTGTTGTATCCTCCTGAGGTGCACAGAAGACCCAAAGAAGACA AAGCTATCGCCCTGGAAGCGAAACGGAGAAATGTACTCCAGCTCAGACCG TTTGTTCTCTTGCATGATGCATGTGAGGACGATGTTGTTCATGTTTTCCC ACCCGTCGATTGACCTCGGGTTCCGTGCTGGGTCACCTGCTGGTGGTAAA TGCTCATACCAAATACGTTCGAGACCAACGAAAGCGGAAACTGTATCGAT GTTTTTACGGTAACCACGGACAACGCAGCCCTCATCTTATGGATAGTACA GTACAAGATGCTGCCGCAATATGCCCTTGATAACAATATCCCCCGCTGTT CTTCTTGTCGCTCATACGGTGTACGCGTTGCAGACGAGCCCAGAGCATGG TGGTACGAACTGTTTGATACATTTCGTCGTATACTTCTAGCTGGCGTGAT GTGCTTAGCCACCGTTACTGCCGCACAGCTTTGGATTGCAACGGGCATTA CGGTGGTAAGACATTGCTAATCGAGAAGCTGCTTAGTGTTGGCGTACAAA CGGTCACCCAAAGTTTCGCTTGCTATACGTTGCTATAGATATGTTTCTCA TTTGTCTGGGGTCATTGATACATGGAGAACATTTGCCCATTGTACTCTCT GCTTTCAGCTGCCACCTGAGCACCCCCCCGCCTCTTCTCCGACTGCATTT CATGGACTGAACGCAGGTTTGCCTGGCGATGAATGTGATCGTTAGCCCTT TTGTCGACAAAATGGACGATCACTTGTACTCGAGCGCGCAAGTTGTGGTG AGTGTGCCCCCCTCTATGTAAACGTATACGCATATACGTGGATGCGCACC GTTTCCCCATATTCGGACCTAGATTTTTATGTCGGCTGAGATACCTGGAG CAGTGAACTATGTTGAGAATGAAGCAGCATATGTCGAATTAACACTCACG GGTATCCCCGGTTGTGTTGCAAACTGGCATGAAAAGAAATGCCTATTCCA GTGAATTCTAACAGGTGACATCATGTTGCATGTTGATCGAGATTCCTTGA CTGTTTTCGACGCAGACTCTTACAGTGCTATTTTCGGCGCTACTAGTGGA AACTGGAGTGATAGACGGGCATGATAACAGTGCCCAGTGGTTGGGTTTGG GTTTAGCCACGGCCGTCAGTGGAGTCATGATCTCAGCGTTCGCCATGATA ACCATCAAGTGGCGTGCTCTGCGTCGACAAGGAACACAGGTAGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28607:816..2913+

>mRNA_H-paniculata_contig28607.7793.1 ID=mRNA_H-paniculata_contig28607.7793.1|Name=mRNA_H-paniculata_contig28607.7793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig28607:816..2913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCATTTTCCTCAGCCTTCGTCTTGCCGGGCCACTACTATCGCGAACT
CTTGGTCGAAGTAGCTGCGCCTCTTCTGATTGCTTTTTCAATCTGCACCG
GGCATCGTGTGAACCGCTGGAAGTCCCCAAGGACCAGGGACACATGTAGG
AAAACGGCAGATGCGGAATGGGCGCATCTCTTGGCACTCTCGTATTTCGT
GCTCAGTCCTGTTACAAACGTGGCACTCCGAGCTTTCTCTTGTGAGAAGG
CATTTTCCTCAGCCTTCGTCTTGCCGGGCCACTACTATCGCGAACTCTTG
GTCGAAGTAGCTGCGCCTCTTCTGATTGCTTTTTCAATCTGCACCGGGCA
TCGTGTGAACCGCTGGAAGTCCCCAAGGACCAGGGACACATGTAGGAAAA
CGGCAGATGCGGAATGGGCGCATCTCTTGGCACTCTCGTATTTCGTGCTC
AGTCCTGTTACAAACGTGGCACTCCGAGCTTTCTCTTGTGAGCTATTTGA
TGACGGTCGCAGAATGTTACGAGCGGACTACTCAATAAACTGCGACGCTG
CAGAACACAGCAGATACCAAATGCTGGCGATGGCGGCTATGGTCTACCCT
GCCGGTACCCTCGTACTCTACTGGGCGATACTCGCGAGGAATCGACAGCT
GTTGTATCCTCCTGAGGTGCACAGAAGACCCAAAGAAGACAAAGCTATCG
CCCTGGAAGCGAAACGGAGAAATGTACTCCAGCTCAGACCGTTTGTTCTC
TTGCATGATGCATCTATTTGATGACGGTCGCAGAATGTTACGAGCGGACT
ACTCAATAAACTGCGACGCTGCAGAACACAGCAGATACCAAATGCTGGCG
ATGGCGGCTATGGTCTACCCTGCCGGTACCCTCGTACTCTACTGGGCGAT
ACTCGCGAGGAATCGACAGCTGTTGTATCCTCCTGAGGTGCACAGAAGAC
CCAAAGAAGACAAAGCTATCGCCCTGGAAGCGAAACGGAGAAATGTACTC
CAGCTCAGACCGTTTGTTCTCTTGCATGATGCATACGAGCCCAGAGCATG
GTGGTACGAACTGTTTGATACATTTCGTCGTATACTTCTAGCTGGCGTGA
TGTGCTTAGCCACCGTTACTGCCGCACAGCTTTGGATTGCAACGGGCATT
ACGGTGACGAGCCCAGAGCATGGTGGTACGAACTGTTTGATACATTTCGT
CGTATACTTCTAGCTGGCGTGATGTGCTTAGCCACCGTTACTGCCGCACA
GCTTTGGATTGCAACGGGCATTACGGTGGTTTGCCTGGCGATGAATGTGA
TCGTTAGCCCTTTTGTCGACAAAATGGACGATCACTTGTACTCGAGCGCG
CAAGTTGTGGTTTGCCTGGCGATGAATGTGATCGTTAGCCCTTTTGTCGA
CAAAATGGACGATCACTTGTACTCGAGCGCGCAAGTTGTGACTCTTACAG
TGCTATTTTCGGCGCTACTAGTGGAAACTGGAGTGATAGACGGGCATGAT
AACAGTGCCCAGTGGTTGGGTTTGGGTTTAGCCACGGCCGTCAGTGGAGT
CATGATCTCAGCGTTCGCCATGATAACCATCAAGTGGCGTGCTCTGCGTC
GACAAGGAACACAGGTAGAATAGACTCTTACAGTGCTATTTTCGGCGCTA
CTAGTGGAAACTGGAGTGATAGACGGGCATGATAACAGTGCCCAGTGGTT
GGGTTTGGGTTTAGCCACGGCCGTCAGTGGAGTCATGATCTCAGCGTTCG
CCATGATAACCATCAAGTGGCGTGCTCTGCGTCGACAAGGAACACAGGTA
GAATAG
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