mRNA_H-paniculata_contig28594.7787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28594.7787.1
Unique NamemRNA_H-paniculata_contig28594.7787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: D7G579_ECTSI (Enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G579_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 4.730e-31
Identity = 69/101 (68.32%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    7 LGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            +G+ RL  PPLNPLSH VR GI+E L  A+ D+ V+ +VITGGD AFSAGADIKEM    AV REP L+TVV AIEAC VPVVAAI GVALGGGCEV   C
Sbjct:   11 VGVIRLRKPPLNPLSHDVRAGILEGLKLAQDDEAVSLIVITGGDKAFSAGADIKEMASAHAVRREPDLLTVVGAIEACTVPVVAAIGGVALGGGCEVALAC 111          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A835ZCY2_9STRA (Enoyl-CoA hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.680e-21
Identity = 56/96 (58.33%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   31 PPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMED---GAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            PPLNPLSH+VR+ ++  LA A  D  V  ++ITG    FSAGADIKEM D      V+ EP L TVV AIEAC  PV+AAI G ALGGGCEV   C
Sbjct:    4 PPLNPLSHAVRQALMTHLATAEKDPAVQIILITGAGTNFSAGADIKEMADLSGSLGVASEPQLTTVVRAIEACNKPVIAAIDGFALGGGCEVALSC 99          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: UPI0014561204 (3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein n=1 Tax=Paraburkholderia aromaticivorans TaxID=2026199 RepID=UPI0014561204)

HSP 1 Score: 88.2 bits (217), Expect = 3.350e-18
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            D + +  L NPP+N L HS R GI E +A+AR+D  V  +VITG  +AFS GADI+E     A+ +EP+L TV++AIEA   PVVAAI  VA+GGG E+   C
Sbjct:    9 DGVAVITLDNPPVNGLGHSTRVGIFEGIARARSDADVAAIVITGASNAFSGGADIREFGTPKAM-QEPSLHTVIEAIEASPKPVVAAIHSVAMGGGLELALAC 110          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A7W3Y7N2_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Lysobacter spongiae TaxID=2025720 RepID=A0A7W3Y7N2_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 6.230e-18
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCE 294
            D + +  L NPP+N L  + R G++ESL +A ADD V  +V+TGG  AFS GADI+E     A S+EPTL TV++A E    PVVAAI G+ALGGG E
Sbjct:    9 DGIAILTLHNPPVNGLGIATRRGLVESLDRACADDAVKGIVVTGGARAFSGGADIREFNKPEA-SQEPTLPTVIEAFEGSAKPVVAAIEGMALGGGLE 105          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A158DIF0_9BURK (3-hydroxyacyl-CoA dehydrogenase n=4 Tax=Caballeronia TaxID=1827195 RepID=A0A158DIF0_9BURK)

HSP 1 Score: 86.7 bits (213), Expect = 1.160e-17
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   22 LCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCE 294
            L NPP+N L HS R GI+E + +A  DDGV  +VI G   AFS GADI E     A S+EPTL+TV+ A+EA   PVVAAI  VA+GGG E
Sbjct:   16 LDNPPVNGLGHSTRLGIVEGIERANGDDGVRAIVIIGAGKAFSGGADITEFNTPKA-SQEPTLMTVIKALEASAKPVVAAIHAVAMGGGLE 105          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A3E0WUP6_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Alkalilimnicola ehrlichii TaxID=351052 RepID=A0A3E0WUP6_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 1.160e-17
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            D + + RL NPP+N LS+ +R GI++ + +A ADD    +VI G D AFS GADI E      V  EPTL TV++ +++ E+PVVAAI GV +GGG E+   C
Sbjct:   10 DGIAVIRLENPPVNGLSYELRRGIVDGIKKAEADDNAKAVVIIGSDRAFSGGADITEFNTPK-VMAEPTLPTVINVLDSTELPVVAAIGGVCMGGGLELAMGC 111          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A2A2AFS4_9BURK (3-hydroxyacyl-CoA dehydrogenase n=7 Tax=Comamonadaceae TaxID=80864 RepID=A0A2A2AFS4_9BURK)

HSP 1 Score: 86.7 bits (213), Expect = 1.160e-17
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            D + L  L NPP+N LSH+ R+GI++ + QA ADDGV  +VITG   AFS GADI E    AA+ REP L +V+  +E    PVVAAI  V +GGG E+   C
Sbjct:    9 DGVALITLDNPPVNGLSHATRQGIVDGMNQALADDGVQAIVITGAGKAFSGGADITEFGKEAAM-REPNLHSVIGVVENASKPVVAAIHTVVMGGGLELALAC 110          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A4R6UCK0_9BURK (3-hydroxyacyl-CoA dehydrogenase n=2 Tax=Tepidicella xavieri TaxID=360241 RepID=A0A4R6UCK0_9BURK)

HSP 1 Score: 85.1 bits (209), Expect = 4.030e-17
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVCPLC 309
            D + +  L +PP+N L+H++R+ I+++L  A AD     LV+TG D AFSAGAD+ E+   A ++ EP L+TV+  + AC  PVVAA+SGVALGGG E+   C
Sbjct:   11 DGVAVITLDHPPVNSLNHALRQRIVQALDAAEADPAACALVLTGQDKAFSAGADVSEVGTPAQLA-EPILLTVLARVAACRKPVVAALSGVALGGGLELAMTC 112          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A1G6HNK7_9BURK (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Paraburkholderia lycopersici TaxID=416944 RepID=A0A1G6HNK7_9BURK)

HSP 1 Score: 85.1 bits (209), Expect = 4.030e-17
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCE 294
            D + +  L NPP+N L HS R GI+E +A+A +D  V+ +VITG   AFS GADI E     A+ +EPTL TV++ +E    PVVAAI GVA+GGG E
Sbjct:    9 DGVAVITLNNPPVNGLGHSTRAGIVEGIARAASDPSVSAIVITGAGKAFSGGADITEFNTPRAM-QEPTLHTVINEVEKSAKPVVAAIHGVAMGGGLE 105          
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Match: A0A507ZXL8_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Lysobacter aestuarii TaxID=1706195 RepID=A0A507ZXL8_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-17
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFSAGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCE 294
            D + +  L NPP+N L  + R G++ESL +A  DD V  +V+TGG  AFS GADI+E     A S+EPTL TV+ A EA   PVVAAI G+ALGGG E
Sbjct:    9 DGIAILTLHNPPVNGLGIATRRGLVESLDRACDDDAVKGVVVTGGARAFSGGADIREFNRPEA-SQEPTLPTVITAFEASPKPVVAAIEGMALGGGLE 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28594.7787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G579_ECTSI4.730e-3168.32Enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme ... [more]
A0A835ZCY2_9STRA6.680e-2158.33Enoyl-CoA hydratase n=1 Tax=Tribonema minus TaxID=... [more]
UPI00145612043.350e-1851.463-hydroxyacyl-CoA dehydrogenase NAD-binding domain... [more]
A0A7W3Y7N2_9GAMM6.230e-1853.063-hydroxyacyl-CoA dehydrogenase n=1 Tax=Lysobacter... [more]
A0A158DIF0_9BURK1.160e-1756.043-hydroxyacyl-CoA dehydrogenase n=4 Tax=Caballeron... [more]
A0A3E0WUP6_9GAMM1.160e-1747.573-hydroxyacyl-CoA dehydrogenase n=1 Tax=Alkalilimn... [more]
A0A2A2AFS4_9BURK1.160e-1750.493-hydroxyacyl-CoA dehydrogenase n=7 Tax=Comamonada... [more]
A0A4R6UCK0_9BURK4.030e-1747.573-hydroxyacyl-CoA dehydrogenase n=2 Tax=Tepidicell... [more]
A0A1G6HNK7_9BURK4.030e-1751.023-hydroxyacyl-CoA dehydrogenase n=1 Tax=Paraburkho... [more]
A0A507ZXL8_9GAMM5.500e-1753.063-hydroxyacyl-CoA dehydrogenase n=1 Tax=Lysobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28594contigH-paniculata_contig28594:2178..2486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.6e-28
Seed eggNOG ortholog2880.D7G579
Preferred nameFAO1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.enoyl-CoA hydratase activity
EggNOG OGsCOG1024@1,KOG1683@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.0966651-CDS-H-paniculata_contig28594:2177..24861622929869.0966651-CDS-H-paniculata_contig28594:2177..2486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28594 2178..2486 +
1691481046.837278-CDS-H-paniculata_contig28594:2177..24861691481046.837278-CDS-H-paniculata_contig28594:2177..2486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28594 2178..2486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28594.7787.1prot_H-paniculata_contig28594.7787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28594 2178..2486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28594.7787.1

>prot_H-paniculata_contig28594.7787.1 ID=prot_H-paniculata_contig28594.7787.1|Name=mRNA_H-paniculata_contig28594.7787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
DPLGLSRLCNPPLNPLSHSVREGIIESLAQARADDGVTCLVITGGDHAFS
AGADIKEMEDGAAVSREPTLVTVVDAIEACEVPVVAAISGVALGGGCEVC
PLC
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mRNA from alignment at H-paniculata_contig28594:2178..2486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28594.7787.1 ID=mRNA_H-paniculata_contig28594.7787.1|Name=mRNA_H-paniculata_contig28594.7787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig28594:2178..2486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCTCTCGGCCTGTCCAGGCTGTGCAATCCCCCTCTCAACCCACTGAG CCATAGCGTGCGTGAGGGCATCATTGAAAGCCTCGCGCAAGCTAGGGCAG ATGATGGGGTAACATGCCTAGTAATCACGGGAGGTGATCATGCCTTTAGT GCGGGAGCCGATATCAAAGAGATGGAAGACGGGGCGGCTGTGAGCCGAGA GCCCACACTTGTGACTGTTGTCGATGCCATCGAGGCGTGCGAGGTTCCGG TAGTAGCGGCTATCAGTGGTGTGGCTCTCGGTGGCGGCTGCGAGGTGTGT CCATTGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig28594:2178..2486+

>mRNA_H-paniculata_contig28594.7787.1 ID=mRNA_H-paniculata_contig28594.7787.1|Name=mRNA_H-paniculata_contig28594.7787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig28594:2178..2486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCTCTCGGCCTGTCCAGGCTGTGCAATCCCCCTCTCAACCCACTGAG
CCATAGCGTGCGTGAGGGCATCATTGAAAGCCTCGCGCAAGCTAGGGCAG
ATGATGGGGTAACATGCCTAGTAATCACGGGAGGTGATCATGCCTTTAGT
GCGGGAGCCGATATCAAAGAGATGGAAGACGGGGCGGCTGTGAGCCGAGA
GCCCACACTTGTGACTGTTGTCGATGCCATCGAGGCGTGCGAGGTTCCGG
TAGTAGCGGCTATCAGTGGTGTGGCTCTCGGTGGCGGCTGCGAGGTGTGT
CCATTGTGTGACCCTCTCGGCCTGTCCAGGCTGTGCAATCCCCCTCTCAA
CCCACTGAGCCATAGCGTGCGTGAGGGCATCATTGAAAGCCTCGCGCAAG
CTAGGGCAGATGATGGGGTAACATGCCTAGTAATCACGGGAGGTGATCAT
GCCTTTAGTGCGGGAGCCGATATCAAAGAGATGGAAGACGGGGCGGCTGT
GAGCCGAGAGCCCACACTTGTGACTGTTGTCGATGCCATCGAGGCGTGCG
AGGTTCCGGTAGTAGCGGCTATCAGTGGTGTGGCTCTCGGTGGCGGCTGC
GAGGTGTGTCCATTGTGT
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